Wall clock time and date at job start Tue Mar 31 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30948 * 122.90161 * 2 1 4 4 C 1.29430 * 117.35971 * 180.02562 * 3 2 1 5 5 C 1.50712 * 124.80107 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47139 * 59.97755 * 5 4 3 7 7 C 1.52997 * 109.46761 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46717 * 299.97435 * 5 4 3 9 9 S 1.70952 * 110.39679 * 0.02562 * 4 3 2 10 10 C 1.35661 * 122.90607 * 180.02562 * 2 1 3 11 11 C 1.46681 * 126.12889 * 0.22517 * 10 2 1 12 12 O 1.21680 * 119.99893 * 350.65083 * 11 10 2 13 13 N 1.34780 * 119.99737 * 170.65203 * 11 10 2 14 14 C 1.46496 * 119.99930 * 0.61787 * 13 11 10 15 15 C 1.46500 * 119.99782 * 180.62092 * 13 11 10 16 16 C 1.53008 * 109.47009 * 89.99932 * 15 13 11 17 17 C 1.52997 * 109.46967 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47154 * 180.02562 * 17 16 15 19 19 C 1.36937 * 119.99823 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99662 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00307 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47201 * 60.00024 * 23 21 19 25 25 H 1.48500 * 109.47096 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47039 * 299.99992 * 23 21 19 27 27 H 1.09001 * 109.46945 * 269.96244 * 1 2 3 28 28 H 1.09003 * 109.46715 * 29.95869 * 1 2 3 29 29 H 1.08994 * 109.46685 * 149.96029 * 1 2 3 30 30 H 1.09001 * 109.47524 * 59.99965 * 6 5 4 31 31 H 1.09001 * 109.47324 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.46994 * 300.00150 * 6 5 4 33 33 H 1.09001 * 109.47797 * 59.99967 * 7 5 4 34 34 H 1.09001 * 109.46766 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46912 * 299.99429 * 7 5 4 36 36 H 1.08995 * 109.46836 * 60.00722 * 8 5 4 37 37 H 1.09001 * 109.46527 * 179.97438 * 8 5 4 38 38 H 1.09000 * 109.47336 * 300.00305 * 8 5 4 39 39 H 1.08997 * 109.47098 * 83.50003 * 14 13 11 40 40 H 1.09004 * 109.47019 * 203.49974 * 14 13 11 41 41 H 1.08996 * 109.47361 * 323.49812 * 14 13 11 42 42 H 1.08990 * 109.47343 * 209.99536 * 15 13 11 43 43 H 1.08996 * 109.47060 * 330.00269 * 15 13 11 44 44 H 1.09003 * 109.46597 * 299.99719 * 16 15 13 45 45 H 1.08996 * 109.46948 * 59.99703 * 16 15 13 46 46 H 1.09006 * 109.46768 * 299.99660 * 17 16 15 47 47 H 1.09000 * 109.47588 * 59.99462 * 17 16 15 48 48 H 0.97000 * 120.00058 * 359.97438 * 18 17 16 49 49 H 0.96993 * 120.00568 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 -0.0005 5 6 4.4822 2.1232 0.0000 6 6 4.2627 2.9782 1.2495 7 6 5.9118 1.5780 -0.0003 8 6 4.2626 2.9792 -1.2490 9 16 3.9448 -0.6779 -0.0018 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0058 12 8 0.5300 -2.7052 0.1610 13 7 2.5542 -3.5495 -0.1953 14 6 3.9879 -3.3137 -0.3825 15 6 2.0281 -4.9166 -0.2142 16 6 1.6429 -5.2952 -1.6457 17 6 1.0928 -6.7227 -1.6653 18 7 0.7245 -7.0854 -3.0361 19 6 0.2061 -8.3249 -3.3006 20 1 0.0690 -9.0353 -2.4987 21 6 -0.1434 -8.6683 -4.5994 22 7 0.0231 -7.8025 -5.5766 23 14 -0.8500 -10.3594 -4.9603 24 1 -2.1056 -10.5461 -4.1897 25 1 -1.1390 -10.4755 -6.4123 26 1 0.1324 -11.4009 -4.5658 27 1 -0.3633 -0.0007 1.0277 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3632 -0.8896 -0.5144 30 1 4.4191 2.3683 2.1393 31 1 4.9686 3.8087 1.2501 32 1 3.2442 3.3665 1.2497 33 1 6.0683 0.9687 -0.8904 34 1 6.6174 2.4088 0.0005 35 1 6.0681 0.9681 0.8896 36 1 3.2442 3.3676 -1.2487 37 1 4.9679 3.8103 -1.2484 38 1 4.4189 2.3700 -2.1392 39 1 4.4690 -3.2096 0.5899 40 1 4.4278 -4.1556 -0.9173 41 1 4.1336 -2.4006 -0.9596 42 1 2.7907 -5.6045 0.1507 43 1 1.1484 -4.9762 0.4266 44 1 0.8801 -4.6072 -2.0106 45 1 2.5226 -5.2355 -2.2865 46 1 1.8553 -7.4108 -1.3002 47 1 0.2130 -6.7820 -1.0245 48 1 0.8479 -6.4475 -3.7564 49 1 -0.2214 -8.0423 -6.4840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670365172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:39 Heat of formation + Delta-G solvation = 8.333005 kcal Electronic energy + Delta-G solvation = -27033.426004 eV Core-core repulsion = 23315.463530 eV Total energy + Delta-G solvation = -3717.962474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64130 -39.64480 -37.19598 -36.19055 -34.87694 -32.43583 -31.49761 -30.03651 -28.39435 -27.92105 -27.70218 -27.20839 -25.41756 -24.94779 -23.02130 -21.26070 -20.69046 -20.36923 -18.65265 -18.15387 -17.03777 -16.83920 -16.26078 -15.97614 -15.41190 -15.03531 -14.61413 -14.46142 -14.40528 -14.25883 -13.99495 -13.74914 -13.34683 -13.26363 -13.17177 -13.02297 -12.84042 -12.63860 -12.44778 -12.35132 -12.14006 -11.98111 -11.96457 -11.86636 -11.51870 -11.45028 -11.36637 -10.92405 -10.82164 -10.74187 -10.41079 -10.11533 -9.99498 -9.73984 -9.68597 -9.54068 -9.07596 -8.83674 -8.62136 -6.89010 -5.72941 -3.01806 0.06729 0.97681 1.38908 2.28450 2.79271 3.06558 3.46606 3.50451 3.51937 3.57237 4.26011 4.35684 4.40863 4.51764 4.62252 4.72817 4.84383 4.92278 4.99493 5.07287 5.15133 5.22117 5.29064 5.32793 5.38474 5.39973 5.43263 5.44101 5.56045 5.59063 5.60615 5.67176 5.69196 5.74052 5.83722 5.86010 5.89089 6.05994 6.22794 6.29624 6.39508 6.45644 6.87002 6.88871 7.15766 7.47982 7.72352 8.00063 8.45917 9.56579 10.15153 10.49701 11.50071 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.002064 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.939317 B =13565.184843 C =13709.246962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.153 3.847 3 N -0.478 5.478 4 C 0.047 3.953 5 C 0.007 3.993 6 C -0.134 4.134 7 C -0.156 4.156 8 C -0.135 4.135 9 S 0.186 5.814 10 C -0.308 4.308 11 C 0.593 3.407 12 O -0.516 6.516 13 N -0.609 5.609 14 C 0.064 3.936 15 C 0.122 3.878 16 C -0.140 4.140 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.021 0.979 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 23.518 15.172 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.015 3.985 3 N -0.192 5.192 4 C -0.228 4.228 5 C 0.004 3.996 6 C -0.192 4.192 7 C -0.214 4.214 8 C -0.194 4.194 9 S 0.446 5.554 10 C -0.432 4.432 11 C 0.380 3.620 12 O -0.394 6.394 13 N -0.342 5.342 14 C -0.081 4.081 15 C 0.000 4.000 16 C -0.179 4.179 17 C 0.029 3.971 18 N -0.377 5.377 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.039 0.961 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.360 23.215 15.285 31.757 hybrid contribution -1.096 -0.688 -0.612 1.431 sum 14.265 22.527 14.673 30.435 Atomic orbital electron populations 1.20615 0.86052 1.04273 1.03631 1.20634 0.98556 0.85076 0.94206 1.66040 1.04593 1.31435 1.17118 1.27908 0.94579 1.00548 0.99776 1.19292 0.91293 0.90849 0.98214 1.21834 1.03020 0.99042 0.95351 1.22050 0.94502 1.02052 1.02757 1.21845 1.03030 0.99060 0.95421 1.84235 1.05235 0.99272 1.66628 1.25500 0.96429 0.99054 1.22192 1.16748 0.85818 0.82391 0.77001 1.90825 1.14614 1.84405 1.49531 1.47691 1.07546 1.07157 1.71784 1.22043 0.81337 1.02631 1.02107 1.21565 1.00200 0.79680 0.98592 1.22078 1.01482 0.98895 0.95433 1.20535 0.96345 0.91329 0.88922 1.42344 1.76565 1.15749 1.03087 1.19203 1.33793 0.91130 0.92918 0.91179 1.24763 1.02340 0.98279 0.95791 1.69654 1.54178 1.34689 0.99824 0.86239 0.78982 0.83885 0.76916 1.21236 1.21693 1.21274 0.90065 0.90835 0.88490 0.92508 0.91508 0.91369 0.91674 0.90487 0.91755 0.91358 0.91518 0.92384 0.91632 0.88643 0.91007 0.90118 0.89326 0.91472 0.91950 0.96378 0.96129 0.78320 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.60 36.01 0.35 -0.72 16 2 C 0.15 1.99 6.79 -83.89 -0.57 1.42 16 3 N -0.48 -5.73 10.48 -7.70 -0.08 -5.81 16 4 C 0.05 0.45 5.78 -13.28 -0.08 0.37 16 5 C 0.01 0.05 0.99 -155.66 -0.15 -0.11 16 6 C -0.13 -0.83 8.45 37.15 0.31 -0.52 16 7 C -0.16 -0.75 7.53 37.16 0.28 -0.47 16 8 C -0.13 -0.88 8.45 37.16 0.31 -0.57 16 9 S 0.19 1.66 16.49 -107.50 -1.77 -0.12 16 10 C -0.31 -3.94 6.24 -37.10 -0.23 -4.17 16 11 C 0.59 8.72 7.60 -12.85 -0.10 8.62 16 12 O -0.52 -9.10 14.00 5.21 0.07 -9.03 16 13 N -0.61 -7.73 2.87 -183.13 -0.53 -8.26 16 14 C 0.06 0.57 8.95 59.84 0.54 1.10 16 15 C 0.12 1.66 5.38 -4.04 -0.02 1.64 16 16 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 17 C 0.16 3.26 6.26 -4.04 -0.03 3.23 16 18 N -0.73 -19.45 5.60 -59.91 -0.34 -19.79 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 23 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.36 6.24 -51.93 -0.32 1.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 40 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 41 H 0.07 0.62 4.62 -23.78 -0.11 0.51 16 42 H 0.08 0.90 8.07 -51.93 -0.42 0.49 16 43 H 0.09 1.31 7.41 -51.93 -0.38 0.93 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -34.74 404.21 -8.87 -43.61 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.24 Total: 4.12 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.21 Total: -0.35 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.22 Total: -62.21 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.77 Total: -0.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.74 -8.87 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670365172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.942 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds