Wall clock time and date at job start Tue Mar 31 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30948 * 122.90161 * 2 1 4 4 C 1.29430 * 117.35971 * 180.02562 * 3 2 1 5 5 C 1.50712 * 124.80107 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47139 * 59.97755 * 5 4 3 7 7 C 1.52997 * 109.46761 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46717 * 299.97435 * 5 4 3 9 9 S 1.70952 * 110.39679 * 0.02562 * 4 3 2 10 10 C 1.35661 * 122.90607 * 180.02562 * 2 1 3 11 11 C 1.46681 * 126.12889 * 0.22517 * 10 2 1 12 12 O 1.21680 * 119.99893 * 350.65083 * 11 10 2 13 13 N 1.34780 * 119.99737 * 170.65203 * 11 10 2 14 14 C 1.46496 * 119.99930 * 0.61787 * 13 11 10 15 15 C 1.46500 * 119.99782 * 180.62092 * 13 11 10 16 16 C 1.53008 * 109.47009 * 89.99932 * 15 13 11 17 17 C 1.52997 * 109.46967 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47154 * 180.02562 * 17 16 15 19 19 C 1.36937 * 119.99823 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99662 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00307 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47201 * 60.00024 * 23 21 19 25 25 H 1.48500 * 109.47096 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47039 * 299.99992 * 23 21 19 27 27 H 1.09001 * 109.46945 * 269.96244 * 1 2 3 28 28 H 1.09003 * 109.46715 * 29.95869 * 1 2 3 29 29 H 1.08994 * 109.46685 * 149.96029 * 1 2 3 30 30 H 1.09001 * 109.47524 * 59.99965 * 6 5 4 31 31 H 1.09001 * 109.47324 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.46994 * 300.00150 * 6 5 4 33 33 H 1.09001 * 109.47797 * 59.99967 * 7 5 4 34 34 H 1.09001 * 109.46766 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46912 * 299.99429 * 7 5 4 36 36 H 1.08995 * 109.46836 * 60.00722 * 8 5 4 37 37 H 1.09001 * 109.46527 * 179.97438 * 8 5 4 38 38 H 1.09000 * 109.47336 * 300.00305 * 8 5 4 39 39 H 1.08997 * 109.47098 * 83.50003 * 14 13 11 40 40 H 1.09004 * 109.47019 * 203.49974 * 14 13 11 41 41 H 1.08996 * 109.47361 * 323.49812 * 14 13 11 42 42 H 1.08990 * 109.47343 * 209.99536 * 15 13 11 43 43 H 1.08996 * 109.47060 * 330.00269 * 15 13 11 44 44 H 1.09003 * 109.46597 * 299.99719 * 16 15 13 45 45 H 1.08996 * 109.46948 * 59.99703 * 16 15 13 46 46 H 1.09006 * 109.46768 * 299.99660 * 17 16 15 47 47 H 1.09000 * 109.47588 * 59.99462 * 17 16 15 48 48 H 0.97000 * 120.00058 * 359.97438 * 18 17 16 49 49 H 0.96993 * 120.00568 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 -0.0005 5 6 4.4822 2.1232 0.0000 6 6 4.2627 2.9782 1.2495 7 6 5.9118 1.5780 -0.0003 8 6 4.2626 2.9792 -1.2490 9 16 3.9448 -0.6779 -0.0018 10 6 2.2440 -1.1390 -0.0005 11 6 1.7192 -2.5087 -0.0058 12 8 0.5300 -2.7052 0.1610 13 7 2.5542 -3.5495 -0.1953 14 6 3.9879 -3.3137 -0.3825 15 6 2.0281 -4.9166 -0.2142 16 6 1.6429 -5.2952 -1.6457 17 6 1.0928 -6.7227 -1.6653 18 7 0.7245 -7.0854 -3.0361 19 6 0.2061 -8.3249 -3.3006 20 1 0.0690 -9.0353 -2.4987 21 6 -0.1434 -8.6683 -4.5994 22 7 0.0231 -7.8025 -5.5766 23 14 -0.8500 -10.3594 -4.9603 24 1 -2.1056 -10.5461 -4.1897 25 1 -1.1390 -10.4755 -6.4123 26 1 0.1324 -11.4009 -4.5658 27 1 -0.3633 -0.0007 1.0277 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3632 -0.8896 -0.5144 30 1 4.4191 2.3683 2.1393 31 1 4.9686 3.8087 1.2501 32 1 3.2442 3.3665 1.2497 33 1 6.0683 0.9687 -0.8904 34 1 6.6174 2.4088 0.0005 35 1 6.0681 0.9681 0.8896 36 1 3.2442 3.3676 -1.2487 37 1 4.9679 3.8103 -1.2484 38 1 4.4189 2.3700 -2.1392 39 1 4.4690 -3.2096 0.5899 40 1 4.4278 -4.1556 -0.9173 41 1 4.1336 -2.4006 -0.9596 42 1 2.7907 -5.6045 0.1507 43 1 1.1484 -4.9762 0.4266 44 1 0.8801 -4.6072 -2.0106 45 1 2.5226 -5.2355 -2.2865 46 1 1.8553 -7.4108 -1.3002 47 1 0.2130 -6.7820 -1.0245 48 1 0.8479 -6.4475 -3.7564 49 1 -0.2214 -8.0423 -6.4840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670365172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:38 Heat of formation + Delta-G solvation = -14.164237 kcal Electronic energy + Delta-G solvation = -27034.401558 eV Core-core repulsion = 23315.463530 eV Total energy + Delta-G solvation = -3718.938027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57350 -40.60328 -37.87116 -37.45835 -36.51271 -34.18036 -32.53765 -31.68958 -29.48223 -28.37496 -28.20927 -28.18875 -26.77269 -25.90872 -24.74121 -22.77622 -21.85449 -21.02627 -19.59248 -19.16679 -18.99089 -17.78269 -17.23050 -16.95391 -16.65748 -16.11895 -15.93503 -15.84844 -15.28583 -15.16369 -15.06011 -14.88737 -14.70724 -14.52094 -14.22858 -13.99422 -13.57570 -13.50378 -13.45395 -13.21432 -13.09728 -12.97402 -12.78343 -12.74146 -12.60859 -12.53389 -12.45138 -12.26457 -12.09813 -11.96183 -11.91718 -11.85042 -11.82670 -11.11429 -10.94769 -10.55897 -10.36872 -10.06198 -9.52775 -9.04061 -7.97247 -5.27442 -0.80349 0.16928 0.57020 1.35179 1.45794 1.50139 1.56124 1.79512 2.04657 2.55056 2.87014 3.35958 3.43960 3.65863 3.82464 3.92637 3.93602 3.95768 3.99965 4.07470 4.26172 4.27464 4.39998 4.54376 4.57585 4.61805 4.65543 4.66894 4.70027 4.73077 4.74612 4.82425 4.84446 4.85270 4.96391 4.97197 5.03212 5.18378 5.24301 5.27534 5.28590 5.35167 5.39944 5.41576 5.46741 6.14177 6.24572 6.63803 6.93253 7.30008 8.05421 8.28565 9.26451 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.002064 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.939317 B =13565.184843 C =13709.246962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.140 3.860 3 N -0.501 5.501 4 C 0.041 3.959 5 C 0.004 3.996 6 C -0.131 4.131 7 C -0.156 4.156 8 C -0.133 4.133 9 S 0.261 5.739 10 C -0.344 4.344 11 C 0.585 3.415 12 O -0.560 6.560 13 N -0.608 5.608 14 C 0.055 3.945 15 C 0.130 3.870 16 C -0.123 4.123 17 C 0.155 3.845 18 N -0.750 5.750 19 C -0.249 4.249 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.279 1.279 25 H -0.294 1.294 26 H -0.273 1.273 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.015 0.985 48 H 0.372 0.628 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.272 23.531 16.284 33.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.001 3.999 3 N -0.215 5.215 4 C -0.233 4.233 5 C 0.000 4.000 6 C -0.190 4.190 7 C -0.214 4.214 8 C -0.192 4.192 9 S 0.523 5.477 10 C -0.467 4.467 11 C 0.374 3.626 12 O -0.441 6.441 13 N -0.339 5.339 14 C -0.089 4.089 15 C 0.008 3.992 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.392 5.392 19 C -0.381 4.381 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.807 3.193 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.199 1.199 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.203 0.797 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.415 23.224 16.444 33.895 hybrid contribution -1.942 -0.608 -0.914 2.231 sum 16.473 22.616 15.530 32.001 Atomic orbital electron populations 1.20510 0.86605 1.03471 1.03576 1.20745 0.98835 0.85784 0.94555 1.66086 1.05733 1.31139 1.18588 1.28630 0.94486 1.02352 0.97844 1.19527 0.91805 0.90100 0.98562 1.21826 1.02592 0.99629 0.94953 1.22096 0.93142 1.03010 1.03151 1.21843 1.02596 0.99673 0.95087 1.83770 1.01303 0.97600 1.65015 1.25480 0.99457 0.97998 1.23758 1.17114 0.85546 0.83499 0.76474 1.90791 1.16499 1.85222 1.51567 1.47749 1.09018 1.06224 1.70895 1.22357 0.79012 1.03532 1.03962 1.21422 1.01014 0.81038 0.95751 1.21882 1.00502 0.95843 0.97969 1.20702 0.96592 0.93833 0.86035 1.42608 1.76697 1.14975 1.04960 1.19654 1.33042 0.92101 0.93287 0.90351 1.25677 1.03418 1.02367 0.95730 1.69825 1.55729 1.36767 0.99964 0.85129 0.78471 0.79349 0.76314 1.20474 1.22066 1.19859 0.89810 0.89981 0.90747 0.92516 0.89199 0.93208 0.91417 0.88386 0.91149 0.93220 0.89181 0.92812 0.88991 0.86778 0.90853 0.86526 0.90822 0.94574 0.91238 0.94474 0.96699 0.79709 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.19 9.60 71.24 0.68 -1.51 16 2 C 0.14 3.76 6.79 42.09 0.29 4.05 16 3 N -0.50 -12.07 10.48 -178.27 -1.87 -13.94 16 4 C 0.04 0.73 5.78 88.47 0.51 1.24 16 5 C 0.00 0.04 0.99 -52.93 -0.05 -0.01 16 6 C -0.13 -1.38 8.45 71.98 0.61 -0.77 16 7 C -0.16 -0.97 7.53 71.98 0.54 -0.43 16 8 C -0.13 -1.52 8.45 71.98 0.61 -0.92 16 9 S 0.26 4.13 16.49 -56.49 -0.93 3.20 16 10 C -0.34 -8.80 6.24 23.88 0.15 -8.65 16 11 C 0.59 17.54 7.60 86.45 0.66 18.20 16 12 O -0.56 -20.94 14.00 -4.29 -0.06 -21.00 16 13 N -0.61 -14.77 2.87 -851.53 -2.45 -17.22 16 14 C 0.05 0.82 8.95 127.77 1.14 1.96 16 15 C 0.13 3.41 5.38 86.38 0.46 3.88 16 16 C -0.12 -4.18 5.65 30.60 0.17 -4.01 16 17 C 0.16 6.41 6.26 86.38 0.54 6.95 16 18 N -0.75 -40.22 5.60 -343.45 -1.92 -42.14 16 19 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 22 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 23 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.30 6.24 -2.39 -0.01 2.29 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.41 7.92 -2.39 -0.02 0.39 16 34 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.07 0.37 7.92 -2.39 -0.02 0.35 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.92 7.82 -2.39 -0.02 0.91 16 40 H 0.11 1.33 8.02 -2.38 -0.02 1.31 16 41 H 0.07 1.07 4.62 -20.29 -0.09 0.98 16 42 H 0.12 2.24 8.07 -2.39 -0.02 2.22 16 43 H 0.07 2.18 7.41 -2.39 -0.02 2.17 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.37 21.29 7.67 -92.71 -0.71 20.58 16 49 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -77.68 404.21 2.84 -74.83 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.14 Total: 26.17 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 7.62 Total: 2.09 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -5.96 Total: -134.48 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.06 Total: -21.00 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -0.93 Total: 3.20 kcal Total: -77.68 2.84 -74.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670365172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.670 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds