Wall clock time and date at job start Tue Mar 31 2020 23:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.53005 * 109.47447 * 120.00224 * 2 1 3 5 5 C 1.50700 * 109.47120 * 64.99348 * 4 2 1 6 6 N 1.28649 * 124.71742 * 90.00496 * 5 4 2 7 7 C 1.33560 * 115.76534 * 180.02562 * 6 5 4 8 8 C 1.47268 * 123.14090 * 179.97438 * 7 6 5 9 9 O 1.21626 * 120.00094 * 186.76010 * 8 7 6 10 10 N 1.34776 * 120.00156 * 6.74808 * 8 7 6 11 11 C 1.46508 * 119.99900 * 5.09203 * 10 8 7 12 12 C 1.46501 * 120.00282 * 185.36361 * 10 8 7 13 13 C 1.52997 * 109.47335 * 269.72945 * 12 10 8 14 14 C 1.52999 * 109.47191 * 179.97438 * 13 12 10 15 15 N 1.46505 * 109.46967 * 179.97438 * 14 13 12 16 16 C 1.46498 * 119.99890 * 89.99935 * 15 14 13 17 17 C 1.36942 * 119.99721 * 269.99621 * 15 14 13 18 18 H 1.07999 * 119.99728 * 23.46426 * 17 15 14 19 19 C 1.38809 * 119.99890 * 203.45164 * 17 15 14 20 20 N 1.31618 * 120.00036 * 10.68485 * 19 17 15 21 21 Si 1.86803 * 120.00164 * 190.67811 * 19 17 15 22 22 H 1.48502 * 109.46843 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46992 * 120.00388 * 21 19 17 24 24 H 1.48498 * 109.47009 * 240.00493 * 21 19 17 25 25 C 1.35203 * 113.72102 * 0.24011 * 7 6 5 26 26 S 1.70764 * 124.72366 * 270.00552 * 5 4 2 27 27 H 1.08999 * 109.47530 * 59.99629 * 1 2 3 28 28 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46673 * 299.99784 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99832 * 2 1 3 31 31 H 1.09010 * 109.47081 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47177 * 299.99812 * 3 2 1 33 33 H 1.09004 * 109.47109 * 60.00483 * 3 2 1 34 34 H 1.09002 * 109.46996 * 304.99881 * 4 2 1 35 35 H 1.08994 * 109.47204 * 184.99859 * 4 2 1 36 36 H 1.08995 * 109.46963 * 275.65032 * 11 10 8 37 37 H 1.09005 * 109.46562 * 35.65095 * 11 10 8 38 38 H 1.08997 * 109.46950 * 155.65049 * 11 10 8 39 39 H 1.09000 * 109.47183 * 29.73135 * 12 10 8 40 40 H 1.09000 * 109.47205 * 149.72893 * 12 10 8 41 41 H 1.09007 * 109.46966 * 299.99876 * 13 12 10 42 42 H 1.09000 * 109.47017 * 59.99832 * 13 12 10 43 43 H 1.08994 * 109.47516 * 299.99767 * 14 13 12 44 44 H 1.09000 * 109.47161 * 60.00062 * 14 13 12 45 45 H 1.09000 * 109.47001 * 94.97394 * 16 15 14 46 46 H 1.09001 * 109.46987 * 214.96794 * 16 15 14 47 47 H 1.09000 * 109.47316 * 334.97693 * 16 15 14 48 48 H 0.96998 * 120.00395 * 179.97438 * 20 19 17 49 49 H 1.07993 * 125.59249 * 179.75832 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 2.3509 -3.1067 0.6595 7 6 1.8240 -4.3331 0.7045 8 6 2.4962 -5.5192 0.1476 9 8 1.9138 -6.5862 0.1088 10 7 3.7568 -5.4222 -0.3194 11 6 4.4980 -4.1671 -0.1720 12 6 4.3837 -6.5699 -0.9798 13 6 5.1137 -7.4210 0.0610 14 6 5.7679 -8.6199 -0.6285 15 7 6.4675 -9.4346 0.3681 16 6 5.7627 -10.5229 1.0500 17 6 7.7803 -9.1788 0.6621 18 1 8.1936 -8.1981 0.4781 19 6 8.5795 -10.1798 1.1969 20 7 8.1463 -11.4222 1.2270 21 14 10.2701 -9.7635 1.8739 22 1 10.5185 -8.3071 1.7239 23 1 10.3316 -10.1302 3.3115 24 1 11.3038 -10.5222 1.1248 25 6 0.6132 -4.3832 1.3040 26 16 0.1846 -2.8088 1.8138 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6055 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 4.2431 -3.4961 -0.9922 37 1 4.2342 -3.6986 0.7762 38 1 5.5682 -4.3729 -0.1902 39 1 3.6170 -7.1715 -1.4681 40 1 5.0966 -6.2158 -1.7244 41 1 5.8805 -6.8194 0.5493 42 1 4.4008 -7.7751 0.8056 43 1 5.0010 -9.2214 -1.1165 44 1 6.4808 -8.2662 -1.3734 45 1 5.9532 -11.4615 0.5295 46 1 6.1185 -10.5986 2.0775 47 1 4.6920 -10.3185 1.0502 48 1 8.7049 -12.1218 1.6004 49 1 0.0158 -5.2724 1.4407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673491370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:38 Heat of formation + Delta-G solvation = 25.459127 kcal Electronic energy + Delta-G solvation = -27004.982836 eV Core-core repulsion = 23287.763006 eV Total energy + Delta-G solvation = -3717.219829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80984 -38.94230 -36.82820 -36.20947 -35.22709 -32.29212 -31.41650 -30.12726 -28.12745 -27.65930 -26.80090 -26.38352 -25.71364 -24.25010 -22.32630 -21.36821 -20.17583 -20.08235 -19.66720 -18.33788 -16.69640 -16.42863 -16.10959 -15.86697 -15.53662 -15.26619 -14.97796 -14.68137 -14.17363 -13.92218 -13.69671 -13.65026 -13.30764 -13.05370 -12.89590 -12.72919 -12.67924 -12.56855 -12.42483 -12.30218 -11.96067 -11.63752 -11.61204 -11.38190 -11.18825 -11.16797 -10.91071 -10.77677 -10.62589 -10.35678 -10.10594 -10.05683 -9.90873 -9.81506 -9.71037 -9.64715 -9.13766 -8.56918 -8.39262 -6.62282 -5.63191 -3.10527 0.26236 0.93272 1.32875 1.80132 3.11048 3.29544 3.41662 3.48008 3.50434 3.64928 4.32371 4.37479 4.43731 4.56301 4.72511 4.85966 5.01379 5.05795 5.14524 5.17436 5.30808 5.33701 5.37340 5.39764 5.47466 5.48257 5.52456 5.56105 5.68854 5.73677 5.79383 5.86435 5.90125 6.03696 6.09729 6.18679 6.31259 6.58101 6.73443 6.89892 6.91075 7.13508 7.16769 7.46874 7.51124 7.83555 7.89246 8.19379 8.49681 9.33418 9.97435 10.47527 11.41455 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002160 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.487555 B =12960.172125 C =13683.344907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.039 4.039 5 C 0.025 3.975 6 N -0.434 5.434 7 C 0.017 3.983 8 C 0.586 3.414 9 O -0.533 6.533 10 N -0.596 5.596 11 C 0.089 3.911 12 C 0.117 3.883 13 C -0.150 4.150 14 C 0.156 3.844 15 N -0.604 5.604 16 C 0.164 3.836 17 C -0.249 4.249 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C -0.228 4.228 26 S 0.202 5.798 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.030 0.970 46 H 0.040 0.960 47 H -0.003 1.003 48 H 0.251 0.749 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 27.285 -1.144 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.079 4.079 5 C -0.254 4.254 6 N -0.150 5.150 7 C -0.118 4.118 8 C 0.371 3.629 9 O -0.409 6.409 10 N -0.327 5.327 11 C -0.054 4.054 12 C -0.005 4.005 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.327 5.327 16 C 0.019 3.981 17 C -0.379 4.379 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.370 4.370 26 S 0.459 5.541 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.061 0.939 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.504 27.076 -0.829 32.805 hybrid contribution 1.448 -0.720 0.133 1.623 sum -17.056 26.356 -0.696 31.401 Atomic orbital electron populations 1.22015 0.95033 1.02120 1.02305 1.21108 0.96109 0.96325 0.97609 1.21821 1.01346 0.95058 1.02115 1.20400 1.03153 0.84978 0.99403 1.27232 0.95592 1.00834 1.01755 1.67319 1.31310 0.98574 1.17748 1.20481 0.94087 0.92343 1.04875 1.17126 0.81516 0.85990 0.78270 1.90827 1.65657 1.27847 1.56620 1.47749 1.13116 1.14530 1.57266 1.21988 0.95670 0.84560 1.03154 1.21660 0.97047 0.86474 0.95350 1.22606 0.99359 0.98493 0.98710 1.20628 0.94612 0.90870 0.91121 1.43891 1.09028 1.36110 1.43666 1.20776 0.89751 0.90587 0.96964 1.19221 0.86082 0.94983 1.37603 0.91546 1.25061 0.97912 0.95001 1.02015 1.70081 1.36872 0.99207 1.49372 0.86183 0.84304 0.77597 0.78473 1.20391 1.21724 1.21750 1.26609 1.00981 1.04306 1.05082 1.82828 1.21269 0.97223 1.52751 0.92138 0.92568 0.92280 0.90370 0.92244 0.92277 0.92442 0.89509 0.88445 0.92626 0.89724 0.91627 0.90233 0.90549 0.92225 0.92378 0.94546 0.93602 0.95204 0.94166 0.98440 0.93903 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 8.89 37.16 0.33 -0.44 16 2 C -0.09 -0.48 2.91 -90.62 -0.26 -0.74 16 3 C -0.15 -0.59 9.19 37.16 0.34 -0.25 16 4 C -0.04 -0.22 5.27 -27.88 -0.15 -0.36 16 5 C 0.03 0.21 5.97 -13.61 -0.08 0.13 16 6 N -0.43 -4.88 6.96 -8.51 -0.06 -4.94 16 7 C 0.02 0.22 6.42 -84.53 -0.54 -0.32 16 8 C 0.59 9.56 7.63 -12.59 -0.10 9.46 16 9 O -0.53 -10.28 16.36 5.25 0.09 -10.19 16 10 N -0.60 -9.02 2.87 -182.90 -0.53 -9.55 16 11 C 0.09 1.09 9.19 59.85 0.55 1.64 16 12 C 0.12 1.85 5.35 -4.04 -0.02 1.83 16 13 C -0.15 -2.90 5.86 -26.73 -0.16 -3.06 16 14 C 0.16 3.40 5.65 -4.04 -0.02 3.38 16 15 N -0.60 -16.20 2.92 -181.12 -0.53 -16.73 16 16 C 0.16 4.37 8.97 59.85 0.54 4.91 16 17 C -0.25 -7.13 9.66 -15.06 -0.15 -7.28 16 18 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 19 C 0.00 -0.06 5.15 -17.43 -0.09 -0.15 16 20 N -0.91 -27.66 10.61 55.49 0.59 -27.07 16 21 Si 0.90 22.52 29.57 -169.99 -5.03 17.49 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.23 -2.50 10.62 29.65 0.31 -2.19 16 26 S 0.20 1.50 21.37 -107.50 -2.30 -0.79 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.32 6.13 -51.93 -0.32 0.01 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 37 H 0.08 1.04 5.86 -51.93 -0.30 0.74 16 38 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 39 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 40 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 45 H 0.03 0.84 7.35 -51.93 -0.38 0.46 16 46 H 0.04 1.14 7.30 -51.93 -0.38 0.76 16 47 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.19 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -34.26 406.76 -9.60 -43.87 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -8.48 Total: -4.78 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 0.51 Total: 6.57 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.53 Total: -58.29 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.30 Total: -0.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.26 -9.60 -43.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.324 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds