Wall clock time and date at job start Tue Mar 31 2020 23:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.53005 * 109.47447 * 120.00224 * 2 1 3 5 5 C 1.50700 * 109.47120 * 64.99348 * 4 2 1 6 6 N 1.28649 * 124.71742 * 90.00496 * 5 4 2 7 7 C 1.33560 * 115.76534 * 180.02562 * 6 5 4 8 8 C 1.47268 * 123.14090 * 179.97438 * 7 6 5 9 9 O 1.21626 * 120.00094 * 186.76010 * 8 7 6 10 10 N 1.34776 * 120.00156 * 6.74808 * 8 7 6 11 11 C 1.46508 * 119.99900 * 5.09203 * 10 8 7 12 12 C 1.46501 * 120.00282 * 185.36361 * 10 8 7 13 13 C 1.52997 * 109.47335 * 269.72945 * 12 10 8 14 14 C 1.52999 * 109.47191 * 179.97438 * 13 12 10 15 15 N 1.46505 * 109.46967 * 179.97438 * 14 13 12 16 16 C 1.46498 * 119.99890 * 89.99935 * 15 14 13 17 17 C 1.36942 * 119.99721 * 269.99621 * 15 14 13 18 18 H 1.07999 * 119.99728 * 23.46426 * 17 15 14 19 19 C 1.38809 * 119.99890 * 203.45164 * 17 15 14 20 20 N 1.31618 * 120.00036 * 10.68485 * 19 17 15 21 21 Si 1.86803 * 120.00164 * 190.67811 * 19 17 15 22 22 H 1.48502 * 109.46843 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46992 * 120.00388 * 21 19 17 24 24 H 1.48498 * 109.47009 * 240.00493 * 21 19 17 25 25 C 1.35203 * 113.72102 * 0.24011 * 7 6 5 26 26 S 1.70764 * 124.72366 * 270.00552 * 5 4 2 27 27 H 1.08999 * 109.47530 * 59.99629 * 1 2 3 28 28 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46673 * 299.99784 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99832 * 2 1 3 31 31 H 1.09010 * 109.47081 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47177 * 299.99812 * 3 2 1 33 33 H 1.09004 * 109.47109 * 60.00483 * 3 2 1 34 34 H 1.09002 * 109.46996 * 304.99881 * 4 2 1 35 35 H 1.08994 * 109.47204 * 184.99859 * 4 2 1 36 36 H 1.08995 * 109.46963 * 275.65032 * 11 10 8 37 37 H 1.09005 * 109.46562 * 35.65095 * 11 10 8 38 38 H 1.08997 * 109.46950 * 155.65049 * 11 10 8 39 39 H 1.09000 * 109.47183 * 29.73135 * 12 10 8 40 40 H 1.09000 * 109.47205 * 149.72893 * 12 10 8 41 41 H 1.09007 * 109.46966 * 299.99876 * 13 12 10 42 42 H 1.09000 * 109.47017 * 59.99832 * 13 12 10 43 43 H 1.08994 * 109.47516 * 299.99767 * 14 13 12 44 44 H 1.09000 * 109.47161 * 60.00062 * 14 13 12 45 45 H 1.09000 * 109.47001 * 94.97394 * 16 15 14 46 46 H 1.09001 * 109.46987 * 214.96794 * 16 15 14 47 47 H 1.09000 * 109.47316 * 334.97693 * 16 15 14 48 48 H 0.96998 * 120.00395 * 179.97438 * 20 19 17 49 49 H 1.07993 * 125.59249 * 179.75832 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 2.3509 -3.1067 0.6595 7 6 1.8240 -4.3331 0.7045 8 6 2.4962 -5.5192 0.1476 9 8 1.9138 -6.5862 0.1088 10 7 3.7568 -5.4222 -0.3194 11 6 4.4980 -4.1671 -0.1720 12 6 4.3837 -6.5699 -0.9798 13 6 5.1137 -7.4210 0.0610 14 6 5.7679 -8.6199 -0.6285 15 7 6.4675 -9.4346 0.3681 16 6 5.7627 -10.5229 1.0500 17 6 7.7803 -9.1788 0.6621 18 1 8.1936 -8.1981 0.4781 19 6 8.5795 -10.1798 1.1969 20 7 8.1463 -11.4222 1.2270 21 14 10.2701 -9.7635 1.8739 22 1 10.5185 -8.3071 1.7239 23 1 10.3316 -10.1302 3.3115 24 1 11.3038 -10.5222 1.1248 25 6 0.6132 -4.3832 1.3040 26 16 0.1846 -2.8088 1.8138 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6055 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 4.2431 -3.4961 -0.9922 37 1 4.2342 -3.6986 0.7762 38 1 5.5682 -4.3729 -0.1902 39 1 3.6170 -7.1715 -1.4681 40 1 5.0966 -6.2158 -1.7244 41 1 5.8805 -6.8194 0.5493 42 1 4.4008 -7.7751 0.8056 43 1 5.0010 -9.2214 -1.1165 44 1 6.4808 -8.2662 -1.3734 45 1 5.9532 -11.4615 0.5295 46 1 6.1185 -10.5986 2.0775 47 1 4.6920 -10.3185 1.0502 48 1 8.7049 -12.1218 1.6004 49 1 0.0158 -5.2724 1.4407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673491370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:37 Heat of formation + Delta-G solvation = 5.816826 kcal Electronic energy + Delta-G solvation = -27005.834590 eV Core-core repulsion = 23287.763006 eV Total energy + Delta-G solvation = -3718.071584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76947 -39.97270 -37.98226 -37.25787 -36.78396 -34.10203 -32.32945 -31.82821 -28.77223 -28.21047 -27.99149 -27.83017 -27.51596 -25.54807 -23.73127 -22.34415 -21.91390 -20.70390 -20.53696 -19.34056 -18.75280 -17.59718 -17.15311 -16.94071 -16.79351 -16.14423 -15.94992 -15.79316 -15.69088 -15.25101 -14.95079 -14.74191 -14.48443 -14.30737 -14.24128 -13.95595 -13.54782 -13.43652 -13.26405 -12.99667 -12.98356 -12.91380 -12.78744 -12.64368 -12.59369 -12.49197 -12.31564 -12.08338 -12.04572 -11.86786 -11.78322 -11.54764 -11.45555 -11.27658 -10.68681 -10.66654 -10.49867 -9.94200 -9.65965 -8.77541 -7.82913 -5.34031 -0.53585 0.23956 0.58106 0.88270 1.45022 1.46058 1.57171 1.98968 2.21458 2.50226 2.89001 3.30331 3.60044 3.66944 3.93108 3.97997 4.04248 4.09332 4.18770 4.29383 4.36532 4.37144 4.50010 4.54114 4.58144 4.72217 4.75907 4.77724 4.81426 4.83234 4.87631 4.89448 4.97240 5.05209 5.10113 5.12774 5.20825 5.22966 5.34636 5.45149 5.46606 5.51267 5.55362 5.60626 5.65185 6.23383 6.32111 6.44938 7.00512 7.13372 7.84855 8.31355 9.21038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002160 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.487555 B =12960.172125 C =13683.344907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.039 4.039 5 C 0.020 3.980 6 N -0.451 5.451 7 C -0.010 4.010 8 C 0.577 3.423 9 O -0.576 6.576 10 N -0.598 5.598 11 C 0.093 3.907 12 C 0.125 3.875 13 C -0.128 4.128 14 C 0.154 3.846 15 N -0.623 5.623 16 C 0.180 3.820 17 C -0.259 4.259 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.944 5.944 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.289 1.289 25 C -0.247 4.247 26 S 0.286 5.714 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.007 0.993 46 H 0.014 0.986 47 H 0.018 0.982 48 H 0.248 0.752 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 30.798 -0.821 35.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.079 4.079 5 C -0.259 4.259 6 N -0.167 5.167 7 C -0.144 4.144 8 C 0.364 3.636 9 O -0.457 6.457 10 N -0.328 5.328 11 C -0.049 4.049 12 C 0.002 3.998 13 C -0.169 4.169 14 C 0.027 3.973 15 N -0.347 5.347 16 C 0.034 3.966 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.591 5.591 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.216 1.216 25 C -0.390 4.390 26 S 0.545 5.455 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -18.729 30.663 -0.521 35.934 hybrid contribution 1.385 -1.705 0.037 2.197 sum -17.344 28.958 -0.485 33.758 Atomic orbital electron populations 1.22036 0.94692 1.01639 1.03227 1.21061 0.96359 0.96814 0.96596 1.21796 1.01329 0.94177 1.02739 1.20586 1.03622 0.83134 1.00583 1.27785 0.95982 1.01617 1.00518 1.67274 1.32251 0.98150 1.19045 1.20162 0.95021 0.92305 1.06961 1.17657 0.81698 0.86551 0.77710 1.90782 1.66695 1.29707 1.58514 1.47851 1.13124 1.15045 1.56776 1.22088 0.95572 0.83450 1.03790 1.21499 0.97083 0.86609 0.94606 1.22278 0.98350 0.97740 0.98581 1.20796 0.94770 0.91129 0.90586 1.44178 1.09103 1.36586 1.44812 1.20489 0.90801 0.90070 0.95191 1.19579 0.86856 0.95262 1.37191 0.90833 1.25931 1.01952 0.94914 1.02735 1.70255 1.38291 1.00124 1.50440 0.85093 0.79428 0.78084 0.77188 1.18706 1.21976 1.21635 1.26847 1.00546 1.06698 1.04873 1.82508 1.19185 0.93555 1.50262 0.91968 0.93629 0.90738 0.92216 0.92289 0.92232 0.91257 0.87056 0.88206 0.91267 0.89684 0.90931 0.91042 0.87682 0.93008 0.95250 0.93884 0.92473 0.97440 0.96701 0.96324 0.94298 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.89 71.98 0.64 -0.50 16 2 C -0.09 -0.72 2.91 -10.79 -0.03 -0.75 16 3 C -0.14 -0.80 9.19 71.98 0.66 -0.14 16 4 C -0.04 -0.33 5.27 29.85 0.16 -0.17 16 5 C 0.02 0.30 5.97 88.57 0.53 0.83 16 6 N -0.45 -9.68 6.96 -180.84 -1.26 -10.94 16 7 C -0.01 -0.25 6.42 40.56 0.26 0.01 16 8 C 0.58 19.25 7.63 86.62 0.66 19.91 16 9 O -0.58 -23.22 16.36 -4.11 -0.07 -23.29 16 10 N -0.60 -17.99 2.87 -850.83 -2.44 -20.44 16 11 C 0.09 2.17 9.19 127.77 1.17 3.34 16 12 C 0.12 3.89 5.35 86.38 0.46 4.36 16 13 C -0.13 -4.96 5.86 30.59 0.18 -4.78 16 14 C 0.15 6.68 5.65 86.38 0.49 7.17 16 15 N -0.62 -33.78 2.92 -726.94 -2.13 -35.90 16 16 C 0.18 9.86 8.97 127.77 1.15 11.00 16 17 C -0.26 -14.83 9.66 84.03 0.81 -14.02 16 18 H 0.07 4.03 7.85 -2.91 -0.02 4.00 16 19 C -0.06 -3.57 5.15 84.86 0.44 -3.13 16 20 N -0.94 -58.54 10.61 21.65 0.23 -58.31 16 21 Si 0.97 46.43 29.57 68.60 2.03 48.46 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 C -0.25 -5.33 10.62 67.12 0.71 -4.62 16 26 S 0.29 3.61 21.37 -56.49 -1.21 2.40 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.04 0.42 6.13 -2.39 -0.01 0.40 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.33 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 37 H 0.08 2.01 5.86 -2.38 -0.01 2.00 16 38 H 0.07 1.57 8.03 -2.39 -0.02 1.55 16 39 H 0.07 2.37 7.49 -2.39 -0.02 2.35 16 40 H 0.11 2.68 8.07 -2.39 -0.02 2.66 16 41 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 44 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 45 H 0.01 0.43 7.35 -2.39 -0.02 0.41 16 46 H 0.01 0.84 7.30 -2.39 -0.02 0.83 16 47 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.19 3.95 8.04 -2.91 -0.02 3.93 16 Total: -1.00 -75.69 406.76 4.35 -71.33 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.91 Total: 8.18 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 8.29 Total: 18.50 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.60 Total: -125.59 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.07 Total: -23.29 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.21 Total: 2.40 kcal Total: -75.69 4.35 -71.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.147 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds