Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30948 * 122.90112 * 2 1 4 4 C 1.29428 * 117.35756 * 180.34378 * 3 2 1 5 5 C 1.50699 * 124.80256 * 179.72895 * 4 3 2 6 6 C 1.53007 * 109.47243 * 59.98260 * 5 4 3 7 7 C 1.53001 * 109.47437 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.47348 * 299.98219 * 5 4 3 9 9 S 1.70953 * 110.39233 * 359.71537 * 4 3 2 10 10 C 1.35660 * 122.90438 * 179.80867 * 2 1 3 11 11 C 1.46681 * 126.13009 * 359.96303 * 10 2 1 12 12 O 1.21686 * 119.99898 * 359.71542 * 11 10 2 13 13 N 1.34783 * 119.99882 * 179.71351 * 11 10 2 14 14 C 1.46493 * 119.99697 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47135 * 64.99844 * 15 14 13 17 17 C 1.52996 * 109.47404 * 184.99571 * 15 14 13 18 18 N 1.46502 * 109.47185 * 305.00154 * 15 14 13 19 19 C 1.46497 * 119.99917 * 299.99898 * 18 15 14 20 20 C 1.36935 * 119.99978 * 119.99570 * 18 15 14 21 21 H 1.07997 * 120.00388 * 339.93699 * 20 18 15 22 22 C 1.38817 * 119.99785 * 159.93883 * 20 18 15 23 23 N 1.31616 * 119.99879 * 344.41090 * 22 20 18 24 24 Si 1.86799 * 119.99761 * 164.13927 * 22 20 18 25 25 H 1.48500 * 109.47162 * 84.88446 * 24 22 20 26 26 H 1.48504 * 109.46562 * 204.88470 * 24 22 20 27 27 H 1.48503 * 109.47067 * 324.88289 * 24 22 20 28 28 H 1.09003 * 109.47265 * 270.19037 * 1 2 3 29 29 H 1.09006 * 109.47364 * 30.19138 * 1 2 3 30 30 H 1.08997 * 109.47414 * 150.19007 * 1 2 3 31 31 H 1.08999 * 109.46611 * 59.99565 * 6 5 4 32 32 H 1.08998 * 109.47410 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46707 * 300.00200 * 6 5 4 34 34 H 1.09006 * 109.46982 * 59.99760 * 7 5 4 35 35 H 1.08998 * 109.47374 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47072 * 300.00529 * 7 5 4 37 37 H 1.08995 * 109.47318 * 59.99709 * 8 5 4 38 38 H 1.08998 * 109.47245 * 179.97438 * 8 5 4 39 39 H 1.08999 * 109.47130 * 300.00014 * 8 5 4 40 40 H 0.96998 * 119.99528 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.47571 * 59.99895 * 14 13 11 42 42 H 1.09000 * 109.47532 * 299.99722 * 14 13 11 43 43 H 1.09006 * 109.46950 * 60.00798 * 17 15 14 44 44 H 1.09007 * 109.47266 * 179.97438 * 17 15 14 45 45 H 1.08992 * 109.47865 * 300.00360 * 17 15 14 46 46 H 1.09006 * 109.47122 * 265.45564 * 19 18 15 47 47 H 1.09004 * 109.47374 * 25.44772 * 19 18 15 48 48 H 1.08998 * 109.47298 * 145.45510 * 19 18 15 49 49 H 0.97002 * 119.99577 * 179.72261 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0069 5 6 4.4821 2.1230 -0.0139 6 6 4.2692 2.9807 1.2351 7 6 5.9117 1.5779 -0.0203 8 6 4.2561 2.9766 -1.2634 9 16 3.9446 -0.6780 -0.0065 10 6 2.2440 -1.1390 0.0038 11 6 1.7191 -2.5087 0.0091 12 8 0.5174 -2.6997 0.0157 13 7 2.5680 -3.5556 0.0067 14 6 2.0438 -4.9235 0.0115 15 6 3.2082 -5.9159 0.0068 16 1 3.7714 -5.8197 0.9351 17 6 2.6637 -7.3406 -0.1139 18 7 4.0878 -5.6314 -1.1297 19 6 3.5631 -5.6950 -2.4960 20 6 5.4005 -5.3058 -0.9149 21 1 5.7157 -4.9435 0.0524 22 6 6.3260 -5.4415 -1.9405 23 7 6.0288 -6.1566 -3.0047 24 14 7.9903 -4.6028 -1.8136 25 1 8.9229 -5.4670 -1.0464 26 1 8.5346 -4.3745 -3.1763 27 1 7.8363 -3.3001 -1.1174 28 1 -0.3634 0.0034 1.0277 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5109 31 1 4.4302 2.3726 2.1252 32 1 4.9751 3.8112 1.2303 33 1 3.2507 3.3691 1.2398 34 1 6.0635 0.9667 -0.9101 35 1 6.6174 2.4086 -0.0250 36 1 6.0727 0.9698 0.8699 37 1 3.2377 3.3650 -1.2587 38 1 4.9614 3.8076 -1.2682 39 1 4.4078 2.3656 -2.1532 40 1 3.5259 -3.4032 0.0011 41 1 1.4296 -5.0804 -0.8753 42 1 1.4383 -5.0776 0.9047 43 1 2.1006 -7.4370 -1.0423 44 1 3.4934 -8.0476 -0.1177 45 1 2.0093 -7.5524 0.7316 46 1 3.7604 -6.6816 -2.9154 47 1 2.4881 -5.5150 -2.4812 48 1 4.0502 -4.9360 -3.1081 49 1 6.6741 -6.2481 -3.7232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675054942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = 11.597256 kcal Electronic energy + Delta-G solvation = -28213.011322 eV Core-core repulsion = 24495.190396 eV Total energy + Delta-G solvation = -3717.820925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.34063 -39.08625 -37.06184 -36.58566 -33.86197 -32.10824 -31.29495 -29.46255 -28.38223 -27.67225 -27.50864 -26.06823 -25.56954 -24.92876 -23.11201 -21.30002 -20.20866 -19.63500 -18.73844 -17.68322 -16.98745 -16.54307 -15.68980 -15.56916 -15.21948 -14.93419 -14.53545 -14.23642 -14.12035 -13.87162 -13.73304 -13.45044 -12.83503 -12.81821 -12.70018 -12.58989 -12.40534 -12.34300 -12.18918 -12.03796 -11.91592 -11.68425 -11.48119 -11.28061 -11.24200 -11.14004 -11.06915 -10.86493 -10.76732 -10.47211 -10.33538 -9.93214 -9.85002 -9.83089 -9.50967 -9.39268 -8.76906 -8.61891 -8.51127 -6.87870 -5.79980 -3.24258 0.33557 1.25615 1.69988 2.52993 3.31439 3.37684 3.39345 3.39846 3.53088 3.81934 4.41398 4.48269 4.63851 4.71746 5.05017 5.07101 5.25393 5.32270 5.32925 5.36370 5.37824 5.51424 5.54608 5.60699 5.62542 5.66551 5.73736 5.80238 5.86509 5.90223 5.92523 6.03496 6.05556 6.06137 6.14708 6.25198 6.39634 6.41231 6.71010 6.79866 6.81606 6.97765 7.34782 7.65286 7.65525 7.74260 7.90476 8.29991 8.48496 9.15111 9.79085 10.27751 11.24776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.004345 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.346523 B = 6441.919424 C = 8619.739793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.140 3.860 3 N -0.477 5.477 4 C 0.061 3.939 5 C 0.009 3.991 6 C -0.133 4.133 7 C -0.159 4.159 8 C -0.134 4.134 9 S 0.188 5.812 10 C -0.299 4.299 11 C 0.591 3.409 12 O -0.540 6.540 13 N -0.699 5.699 14 C 0.107 3.893 15 C 0.157 3.843 16 H 0.068 0.932 17 C -0.156 4.156 18 N -0.594 5.594 19 C 0.165 3.835 20 C -0.263 4.263 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.028 0.972 47 H -0.001 1.001 48 H 0.042 0.958 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 14.947 6.817 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.002 3.998 3 N -0.191 5.191 4 C -0.214 4.214 5 C 0.005 3.995 6 C -0.192 4.192 7 C -0.217 4.217 8 C -0.193 4.193 9 S 0.448 5.552 10 C -0.423 4.423 11 C 0.376 3.624 12 O -0.421 6.421 13 N -0.349 5.349 14 C -0.019 4.019 15 C 0.048 3.952 16 H 0.087 0.913 17 C -0.216 4.216 18 N -0.318 5.318 19 C 0.020 3.980 20 C -0.392 4.392 21 H 0.087 0.913 22 C -0.193 4.193 23 N -0.545 5.545 24 Si 0.727 3.273 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.204 1.204 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.245 0.755 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.017 0.983 48 H 0.060 0.940 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.886 14.686 6.641 16.579 hybrid contribution 0.620 0.292 -0.149 0.701 sum -3.266 14.978 6.491 16.648 Atomic orbital electron populations 1.20605 0.86248 1.04220 1.03343 1.20590 0.98439 0.84957 0.95790 1.65957 1.04324 1.31325 1.17488 1.27420 0.94321 0.98418 1.01252 1.19286 0.91363 0.90660 0.98163 1.21837 1.02869 0.99009 0.95469 1.22079 0.94295 1.02068 1.03258 1.21843 1.02836 0.99063 0.95558 1.84339 1.04729 1.01065 1.65108 1.25635 0.96722 0.99358 1.20634 1.16690 0.86177 0.82510 0.77044 1.90728 1.14358 1.85155 1.51847 1.45822 1.10369 1.05878 1.72854 1.22019 0.97922 0.80846 1.01086 1.20621 0.90368 0.91438 0.92777 0.91344 1.22181 1.00678 0.98335 1.00372 1.44019 1.06878 1.80408 1.00447 1.20723 0.91645 1.00451 0.85132 1.19165 0.84024 1.37657 0.98365 0.91347 1.24935 0.97582 0.98878 0.97856 1.70093 1.35142 1.40131 1.09178 0.86401 0.84327 0.79654 0.76936 1.21355 1.21578 1.20426 0.90494 0.91157 0.88210 0.92442 0.91541 0.91422 0.91415 0.90494 0.91587 0.91423 0.91530 0.92302 0.75533 0.91773 0.92121 0.93103 0.92141 0.93896 0.95363 0.98287 0.93966 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.69 36.01 0.35 -0.81 16 2 C 0.14 2.17 6.79 -83.89 -0.57 1.60 16 3 N -0.48 -6.92 10.48 -7.70 -0.08 -7.00 16 4 C 0.06 0.80 5.78 -13.29 -0.08 0.73 16 5 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 6 C -0.13 -1.15 8.45 37.16 0.31 -0.84 16 7 C -0.16 -1.44 7.53 37.16 0.28 -1.16 16 8 C -0.13 -1.23 8.45 37.16 0.31 -0.92 16 9 S 0.19 2.69 20.68 -107.50 -2.22 0.47 16 10 C -0.30 -4.91 6.48 -37.10 -0.24 -5.15 16 11 C 0.59 10.72 7.78 -12.85 -0.10 10.62 16 12 O -0.54 -10.60 14.27 5.20 0.07 -10.53 16 13 N -0.70 -12.64 5.38 -61.62 -0.33 -12.98 16 14 C 0.11 1.90 4.93 -4.05 -0.02 1.88 16 15 C 0.16 2.99 2.87 -67.93 -0.19 2.79 16 16 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 17 C -0.16 -2.71 9.19 37.16 0.34 -2.37 16 18 N -0.59 -13.72 2.29 -173.48 -0.40 -14.11 16 19 C 0.17 3.93 8.01 59.85 0.48 4.41 16 20 C -0.26 -6.63 9.34 -15.06 -0.14 -6.77 16 21 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.01 0.17 5.05 -17.43 -0.09 0.09 16 23 N -0.90 -25.22 10.69 55.49 0.59 -24.63 16 24 Si 0.90 20.62 29.58 -169.99 -5.03 15.59 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.50 6.02 -51.93 -0.31 1.19 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 7.92 -51.92 -0.41 0.19 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.41 7.57 7.07 -40.82 -0.29 7.28 16 41 H 0.06 1.21 6.86 -51.93 -0.36 0.85 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.89 7.67 -51.93 -0.40 0.50 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 47 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 48 H 0.04 1.09 7.17 -51.93 -0.37 0.72 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -29.30 402.31 -9.14 -38.44 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.30 Total: 4.64 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.49 Total: 4.03 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.22 Total: -58.71 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.22 Total: 0.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.30 -9.14 -38.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675054942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.041 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds