Wall clock time and date at job start Tue Mar 31 2020 22:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30948 * 122.90112 * 2 1 4 4 C 1.29428 * 117.35756 * 180.34378 * 3 2 1 5 5 C 1.50699 * 124.80256 * 179.72895 * 4 3 2 6 6 C 1.53007 * 109.47243 * 59.98260 * 5 4 3 7 7 C 1.53001 * 109.47437 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.47348 * 299.98219 * 5 4 3 9 9 S 1.70953 * 110.39233 * 359.71537 * 4 3 2 10 10 C 1.35660 * 122.90438 * 179.80867 * 2 1 3 11 11 C 1.46681 * 126.13009 * 359.96303 * 10 2 1 12 12 O 1.21686 * 119.99898 * 359.71542 * 11 10 2 13 13 N 1.34783 * 119.99882 * 179.71351 * 11 10 2 14 14 C 1.46493 * 119.99697 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47135 * 64.99844 * 15 14 13 17 17 C 1.52996 * 109.47404 * 184.99571 * 15 14 13 18 18 N 1.46502 * 109.47185 * 305.00154 * 15 14 13 19 19 C 1.46497 * 119.99917 * 299.99898 * 18 15 14 20 20 C 1.36935 * 119.99978 * 119.99570 * 18 15 14 21 21 H 1.07997 * 120.00388 * 339.93699 * 20 18 15 22 22 C 1.38817 * 119.99785 * 159.93883 * 20 18 15 23 23 N 1.31616 * 119.99879 * 344.41090 * 22 20 18 24 24 Si 1.86799 * 119.99761 * 164.13927 * 22 20 18 25 25 H 1.48500 * 109.47162 * 84.88446 * 24 22 20 26 26 H 1.48504 * 109.46562 * 204.88470 * 24 22 20 27 27 H 1.48503 * 109.47067 * 324.88289 * 24 22 20 28 28 H 1.09003 * 109.47265 * 270.19037 * 1 2 3 29 29 H 1.09006 * 109.47364 * 30.19138 * 1 2 3 30 30 H 1.08997 * 109.47414 * 150.19007 * 1 2 3 31 31 H 1.08999 * 109.46611 * 59.99565 * 6 5 4 32 32 H 1.08998 * 109.47410 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46707 * 300.00200 * 6 5 4 34 34 H 1.09006 * 109.46982 * 59.99760 * 7 5 4 35 35 H 1.08998 * 109.47374 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47072 * 300.00529 * 7 5 4 37 37 H 1.08995 * 109.47318 * 59.99709 * 8 5 4 38 38 H 1.08998 * 109.47245 * 179.97438 * 8 5 4 39 39 H 1.08999 * 109.47130 * 300.00014 * 8 5 4 40 40 H 0.96998 * 119.99528 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.47571 * 59.99895 * 14 13 11 42 42 H 1.09000 * 109.47532 * 299.99722 * 14 13 11 43 43 H 1.09006 * 109.46950 * 60.00798 * 17 15 14 44 44 H 1.09007 * 109.47266 * 179.97438 * 17 15 14 45 45 H 1.08992 * 109.47865 * 300.00360 * 17 15 14 46 46 H 1.09006 * 109.47122 * 265.45564 * 19 18 15 47 47 H 1.09004 * 109.47374 * 25.44772 * 19 18 15 48 48 H 1.08998 * 109.47298 * 145.45510 * 19 18 15 49 49 H 0.97002 * 119.99577 * 179.72261 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0069 5 6 4.4821 2.1230 -0.0139 6 6 4.2692 2.9807 1.2351 7 6 5.9117 1.5779 -0.0203 8 6 4.2561 2.9766 -1.2634 9 16 3.9446 -0.6780 -0.0065 10 6 2.2440 -1.1390 0.0038 11 6 1.7191 -2.5087 0.0091 12 8 0.5174 -2.6997 0.0157 13 7 2.5680 -3.5556 0.0067 14 6 2.0438 -4.9235 0.0115 15 6 3.2082 -5.9159 0.0068 16 1 3.7714 -5.8197 0.9351 17 6 2.6637 -7.3406 -0.1139 18 7 4.0878 -5.6314 -1.1297 19 6 3.5631 -5.6950 -2.4960 20 6 5.4005 -5.3058 -0.9149 21 1 5.7157 -4.9435 0.0524 22 6 6.3260 -5.4415 -1.9405 23 7 6.0288 -6.1566 -3.0047 24 14 7.9903 -4.6028 -1.8136 25 1 8.9229 -5.4670 -1.0464 26 1 8.5346 -4.3745 -3.1763 27 1 7.8363 -3.3001 -1.1174 28 1 -0.3634 0.0034 1.0277 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5109 31 1 4.4302 2.3726 2.1252 32 1 4.9751 3.8112 1.2303 33 1 3.2507 3.3691 1.2398 34 1 6.0635 0.9667 -0.9101 35 1 6.6174 2.4086 -0.0250 36 1 6.0727 0.9698 0.8699 37 1 3.2377 3.3650 -1.2587 38 1 4.9614 3.8076 -1.2682 39 1 4.4078 2.3656 -2.1532 40 1 3.5259 -3.4032 0.0011 41 1 1.4296 -5.0804 -0.8753 42 1 1.4383 -5.0776 0.9047 43 1 2.1006 -7.4370 -1.0423 44 1 3.4934 -8.0476 -0.1177 45 1 2.0093 -7.5524 0.7316 46 1 3.7604 -6.6816 -2.9154 47 1 2.4881 -5.5150 -2.4812 48 1 4.0502 -4.9360 -3.1081 49 1 6.6741 -6.2481 -3.7232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675054942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:10 Heat of formation + Delta-G solvation = -4.944793 kcal Electronic energy + Delta-G solvation = -28213.728639 eV Core-core repulsion = 24495.190396 eV Total energy + Delta-G solvation = -3718.538242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52210 -40.41626 -38.47155 -37.70885 -35.49918 -33.81589 -32.42480 -31.22998 -29.63498 -28.37704 -28.19951 -28.03677 -26.91744 -25.98694 -24.95143 -22.63025 -21.29961 -21.02772 -20.10578 -18.86795 -18.78396 -17.80686 -17.19586 -16.91920 -16.61056 -16.09713 -15.96882 -15.53150 -15.30294 -15.02576 -14.88506 -14.60416 -14.53705 -14.43757 -13.94006 -13.65203 -13.59972 -13.55131 -13.16056 -13.07983 -12.98628 -12.89342 -12.63611 -12.63054 -12.53682 -12.51041 -12.33087 -12.26362 -12.11622 -12.00345 -11.95240 -11.78322 -11.54258 -11.15186 -10.71359 -10.60297 -10.57394 -10.09445 -9.76118 -8.81973 -7.79643 -5.24814 -0.82419 0.12907 0.56172 1.34170 1.49109 1.50804 1.58526 2.05170 2.17518 2.53348 2.82203 3.35641 3.61112 3.61742 3.77858 3.89527 3.90038 3.98724 4.07811 4.23623 4.33494 4.56977 4.64048 4.67278 4.67660 4.70846 4.71528 4.73964 4.83137 4.83754 4.90671 4.93743 4.94273 5.01520 5.02625 5.18610 5.21082 5.24039 5.32702 5.34102 5.37630 5.40508 5.51972 5.66644 5.72845 6.33243 6.41656 6.56211 7.06230 7.16946 7.88411 8.33471 9.24331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.004345 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.346523 B = 6441.919424 C = 8619.739793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.142 3.858 3 N -0.488 5.488 4 C 0.078 3.922 5 C 0.005 3.995 6 C -0.129 4.129 7 C -0.160 4.160 8 C -0.132 4.132 9 S 0.183 5.817 10 C -0.332 4.332 11 C 0.591 3.409 12 O -0.561 6.561 13 N -0.702 5.702 14 C 0.116 3.884 15 C 0.155 3.845 16 H 0.074 0.926 17 C -0.147 4.147 18 N -0.604 5.604 19 C 0.186 3.814 20 C -0.258 4.258 21 H 0.079 0.921 22 C -0.049 4.049 23 N -0.937 5.937 24 Si 0.954 3.046 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.260 1.260 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.405 0.595 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.002 0.998 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 17.019 8.391 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.003 3.997 3 N -0.202 5.202 4 C -0.197 4.197 5 C 0.001 3.999 6 C -0.188 4.188 7 C -0.218 4.218 8 C -0.191 4.191 9 S 0.444 5.556 10 C -0.456 4.456 11 C 0.377 3.623 12 O -0.443 6.443 13 N -0.352 5.352 14 C -0.009 4.009 15 C 0.048 3.952 16 H 0.092 0.908 17 C -0.207 4.207 18 N -0.327 5.327 19 C 0.041 3.959 20 C -0.388 4.388 21 H 0.097 0.903 22 C -0.244 4.244 23 N -0.584 5.584 24 Si 0.783 3.217 25 H -0.213 1.213 26 H -0.228 1.228 27 H -0.185 1.185 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.242 0.758 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.020 0.980 47 H 0.036 0.964 48 H 0.032 0.968 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.433 16.756 8.258 18.994 hybrid contribution 0.435 -0.271 -0.585 0.778 sum -2.998 16.486 7.673 18.429 Atomic orbital electron populations 1.20596 0.85324 1.04172 1.03961 1.20931 0.99312 0.85002 0.94446 1.66047 1.04823 1.30733 1.18644 1.28170 0.94493 0.98646 0.98396 1.19568 0.91059 0.89831 0.99400 1.21834 1.03148 0.99442 0.94369 1.22123 0.94069 1.02926 1.02676 1.21850 1.03170 0.99526 0.94513 1.84288 1.03674 1.02167 1.65477 1.25507 0.97994 0.98731 1.23344 1.16881 0.85894 0.83124 0.76378 1.90708 1.15059 1.85655 1.52854 1.45843 1.10208 1.06055 1.73076 1.21896 0.97137 0.80432 1.01470 1.20799 0.90260 0.92747 0.91378 0.90751 1.22062 1.00496 0.96466 1.01674 1.44163 1.06899 1.80566 1.01096 1.20358 0.92299 0.97913 0.85344 1.19534 0.84758 1.36047 0.98421 0.90297 1.25643 1.00868 0.99992 0.97926 1.70259 1.36018 1.42139 1.09963 0.85485 0.80546 0.79450 0.76266 1.21345 1.22758 1.18489 0.89459 0.89501 0.89808 0.92694 0.88850 0.92306 0.92466 0.87836 0.91719 0.92253 0.88782 0.93261 0.75846 0.92917 0.90145 0.93675 0.93867 0.90319 0.97995 0.96357 0.96827 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.69 71.24 0.69 -1.48 16 2 C 0.14 4.31 6.79 42.09 0.29 4.59 16 3 N -0.49 -13.62 10.48 -178.28 -1.87 -15.49 16 4 C 0.08 1.95 5.78 88.46 0.51 2.46 16 5 C 0.01 0.10 0.99 -52.93 -0.05 0.04 16 6 C -0.13 -1.87 8.45 71.98 0.61 -1.27 16 7 C -0.16 -2.48 7.53 71.98 0.54 -1.93 16 8 C -0.13 -2.09 8.45 71.98 0.61 -1.49 16 9 S 0.18 5.14 20.68 -56.49 -1.17 3.97 16 10 C -0.33 -10.81 6.48 23.88 0.15 -10.66 16 11 C 0.59 21.35 7.78 86.45 0.67 22.02 16 12 O -0.56 -21.94 14.27 -4.30 -0.06 -22.00 16 13 N -0.70 -25.06 5.38 -467.09 -2.51 -27.57 16 14 C 0.12 3.99 4.93 86.38 0.43 4.41 16 15 C 0.16 5.74 2.87 44.99 0.13 5.87 16 16 H 0.07 2.68 7.85 -2.38 -0.02 2.66 16 17 C -0.15 -4.92 9.19 71.98 0.66 -4.26 16 18 N -0.60 -27.85 2.29 -702.77 -1.61 -29.46 16 19 C 0.19 9.04 8.01 127.77 1.02 10.06 16 20 C -0.26 -12.92 9.34 84.03 0.79 -12.14 16 21 H 0.08 3.73 7.81 -2.91 -0.02 3.71 16 22 C -0.05 -2.60 5.05 84.86 0.43 -2.17 16 23 N -0.94 -53.80 10.69 21.65 0.23 -53.57 16 24 Si 0.95 42.41 29.58 68.60 2.03 44.44 16 25 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.08 2.52 6.02 -2.39 -0.01 2.51 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.02 7.92 -2.38 -0.02 1.00 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.02 7.92 -2.38 -0.02 1.00 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.41 14.88 7.07 -92.71 -0.66 14.22 16 41 H 0.05 1.94 6.86 -2.38 -0.02 1.93 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.54 7.67 -2.38 -0.02 1.53 16 44 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.00 0.09 7.44 -2.38 -0.02 0.08 16 47 H 0.02 0.79 6.53 -2.38 -0.02 0.78 16 48 H 0.01 0.70 7.17 -2.39 -0.02 0.69 16 49 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -63.59 402.31 2.80 -60.80 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.28 Total: 24.81 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.47 Total: 14.07 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.76 Total: -126.09 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.17 Total: 3.97 kcal Total: -63.59 2.80 -60.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675054942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.853 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds