Wall clock time and date at job start Tue Mar 31 2020 23:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47143 * 2 1 4 4 C 1.53000 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47356 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 3 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 3 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 3 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21568 * 119.99816 * 0.02562 * 18 17 5 20 20 C 1.47760 * 119.99967 * 179.97438 * 18 17 5 21 21 N 1.32892 * 119.68873 * 359.73596 * 20 18 17 22 22 C 1.31288 * 121.71692 * 179.70992 * 21 20 18 23 23 C 1.39359 * 120.88495 * 0.55882 * 22 21 20 24 24 O 1.35716 * 120.36548 * 179.74987 * 23 22 21 25 25 C 1.42905 * 116.99743 * 359.97438 * 24 23 22 26 26 C 1.39053 * 119.27684 * 359.72719 * 23 22 21 27 27 C 1.38696 * 118.42384 * 0.02562 * 26 23 22 28 28 F 1.35096 * 120.46203 * 179.97438 * 27 26 23 29 29 H 1.09006 * 109.47301 * 299.99986 * 1 2 3 30 30 H 1.09004 * 109.47499 * 60.00121 * 1 2 3 31 31 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47271 * 240.00078 * 2 1 3 33 33 H 1.09004 * 109.47499 * 119.99879 * 2 1 3 34 34 H 1.09006 * 109.47011 * 59.99836 * 3 2 1 35 35 H 1.08994 * 109.46764 * 300.00195 * 3 2 1 36 36 H 1.08996 * 109.46705 * 59.99742 * 4 3 2 37 37 H 1.09004 * 109.46936 * 300.00219 * 4 3 2 38 38 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 39 39 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 41 41 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 43 43 H 1.07997 * 119.55744 * 180.29039 * 22 21 20 44 44 H 1.08999 * 109.46892 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47242 * 300.00423 * 25 24 23 46 46 H 1.08999 * 109.46561 * 60.00613 * 25 24 23 47 47 H 1.07995 * 120.78871 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8869 0.1277 8 7 6.1029 4.2595 0.0084 9 6 7.4467 4.5097 0.0912 10 1 8.1392 3.6951 0.2440 11 6 7.9187 5.8101 -0.0212 12 7 7.0747 6.8028 -0.2069 13 14 9.7519 6.1514 0.0911 14 1 10.3525 6.0802 -1.2652 15 1 9.9693 7.5065 0.6583 16 1 10.3910 5.1387 0.9693 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1072 -1.3660 19 8 1.6989 4.0752 -0.4313 20 6 2.0854 4.7687 -2.6284 21 7 2.9416 4.8055 -3.6441 22 6 2.6345 5.3776 -4.7852 23 6 1.3929 5.9824 -4.9710 24 8 1.0884 6.5751 -6.1533 25 6 2.0907 6.5443 -7.1715 26 6 0.4690 5.9716 -3.9318 27 6 0.8221 5.3547 -2.7408 28 9 -0.0435 5.3206 -1.7042 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 6.0356 2.2739 -0.6639 39 1 5.8893 2.4800 1.0980 40 1 5.4809 4.9910 -0.1284 41 1 7.4045 7.7117 -0.2851 42 1 4.3126 3.5662 -1.9962 43 1 3.3555 5.3833 -5.5893 44 1 1.7197 7.0518 -8.0619 45 1 2.9881 7.0487 -6.8134 46 1 2.3287 5.5090 -7.4156 47 1 -0.5006 6.4326 -4.0493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675222050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:53 Heat of formation + Delta-G solvation = -80.462550 kcal Electronic energy + Delta-G solvation = -30075.237861 eV Core-core repulsion = 25787.211747 eV Total energy + Delta-G solvation = -4288.026114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.01850 -40.98507 -39.64978 -38.20592 -36.41014 -34.85584 -33.50626 -32.61968 -31.44145 -30.57686 -30.05474 -27.97577 -27.15601 -24.83939 -24.12525 -23.35197 -22.22443 -21.27468 -20.67932 -20.05723 -18.82141 -18.19906 -17.76374 -16.97123 -16.50099 -16.36948 -16.11821 -15.71876 -15.23272 -15.14966 -14.85892 -14.60350 -14.47097 -13.81113 -13.65753 -13.51885 -13.49587 -13.20654 -13.04521 -12.88395 -12.67978 -12.55300 -12.40554 -12.02199 -11.91149 -11.81161 -11.26511 -11.03777 -10.87445 -10.80087 -10.77193 -10.32905 -10.27744 -10.14829 -9.98468 -9.76647 -9.69654 -9.56560 -8.88786 -8.81987 -8.50699 -6.92194 -5.74421 -3.04149 0.42314 0.76879 2.57944 2.77574 3.33165 3.43919 3.49091 3.50979 3.71356 3.93665 4.05748 4.20421 4.55833 4.59508 4.67310 4.74008 4.76817 4.91572 5.06670 5.11814 5.12490 5.24396 5.40512 5.46657 5.52569 5.54712 5.58728 5.63344 5.88369 5.93701 6.01393 6.03448 6.07756 6.12732 6.21723 6.27897 6.36548 6.51743 6.53835 6.68787 6.69428 6.75222 6.99886 7.40134 7.70676 7.94783 8.42934 8.53697 9.54827 10.11535 10.46916 11.47808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006834 B = 0.004286 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4096.008808 B = 6531.641629 C = 9726.406438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.137 3.863 6 H 0.089 0.911 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.686 5.686 18 C 0.572 3.428 19 O -0.527 6.527 20 C 0.015 3.985 21 N -0.383 5.383 22 C 0.012 3.988 23 C 0.127 3.873 24 O -0.304 6.304 25 C 0.020 3.980 26 C -0.163 4.163 27 C 0.153 3.847 28 F -0.098 7.098 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.413 0.587 43 H 0.172 0.828 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.510 -6.676 -12.567 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.032 3.968 6 H 0.107 0.893 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.337 5.337 18 C 0.356 3.644 19 O -0.403 6.403 20 C -0.125 4.125 21 N -0.094 5.094 22 C -0.151 4.151 23 C 0.078 3.922 24 O -0.215 6.215 25 C -0.075 4.075 26 C -0.190 4.190 27 C 0.130 3.870 28 F -0.076 7.076 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.250 0.750 43 H 0.189 0.811 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.261 -7.018 -11.741 19.761 hybrid contribution 0.476 1.024 -0.526 1.246 sum -13.785 -5.994 -12.267 19.402 Atomic orbital electron populations 1.21743 0.96289 1.00771 1.01889 1.21566 0.95598 0.97734 1.01327 1.21676 0.94789 0.95351 1.03224 1.21980 0.96071 0.96204 1.02261 1.21380 0.96213 0.92506 0.86698 0.89289 1.20963 0.89129 0.89425 0.98801 1.42349 1.05418 1.02018 1.87779 1.19211 0.83665 0.92460 1.41885 0.91150 1.24736 0.97571 0.95676 1.02796 1.69677 1.32806 0.98941 1.56429 0.86202 0.85262 0.77239 0.77536 1.21777 1.21841 1.20763 1.45757 1.15313 1.55241 1.17354 1.17397 0.82899 0.78724 0.85407 1.90839 1.51598 1.59402 1.38476 1.21400 0.90829 1.04158 0.96088 1.67535 1.31186 1.12096 0.98628 1.23080 0.95131 1.00097 0.96797 1.20007 0.93632 0.92077 0.86494 1.86045 1.42798 1.72153 1.20519 1.23268 0.91757 1.02872 0.89596 1.20783 1.02247 1.05204 0.90721 1.18237 0.87862 0.96153 0.84774 1.91640 1.67348 1.93480 1.55158 0.92742 0.93032 0.93364 0.92652 0.92393 0.91400 0.91933 0.91893 0.91008 0.95742 0.94804 0.77955 0.93577 0.75026 0.81076 0.87492 0.91588 0.91817 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.15 0.37 -1.29 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.11 -1.60 3.81 -26.73 -0.10 -1.71 16 4 C -0.13 -1.78 4.89 -26.73 -0.13 -1.91 16 5 C 0.14 2.36 2.42 -67.94 -0.16 2.20 16 6 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 7 C 0.14 2.87 5.82 -4.04 -0.02 2.85 16 8 N -0.73 -18.45 5.43 -59.91 -0.33 -18.78 16 9 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 11 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 12 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 13 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 N -0.69 -11.95 4.46 -54.78 -0.24 -12.19 16 18 C 0.57 10.24 6.36 -12.37 -0.08 10.16 16 19 O -0.53 -10.32 12.44 5.31 0.07 -10.26 16 20 C 0.01 0.24 6.75 -82.96 -0.56 -0.32 16 21 N -0.38 -5.65 9.52 -9.63 -0.09 -5.74 16 22 C 0.01 0.13 10.21 -17.37 -0.18 -0.04 16 23 C 0.13 1.37 6.72 -38.86 -0.26 1.10 16 24 O -0.30 -2.72 10.50 -18.85 -0.20 -2.92 16 25 C 0.02 0.10 9.82 101.05 0.99 1.09 16 26 C -0.16 -1.87 10.10 -39.11 -0.40 -2.27 16 27 C 0.15 2.21 7.31 -38.86 -0.28 1.93 16 28 F -0.10 -1.55 15.54 2.25 0.03 -1.51 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.06 7.84 -51.93 -0.41 0.66 16 35 H 0.06 0.99 5.65 -51.93 -0.29 0.70 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 10.52 7.33 -40.82 -0.30 10.22 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.41 7.26 7.92 -40.82 -0.32 6.93 16 43 H 0.17 1.43 6.31 -52.49 -0.33 1.10 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.32 7.67 -51.93 -0.40 -0.07 16 46 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 47 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -33.09 390.96 -7.43 -40.52 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.04 Total: 12.37 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.22 Total: 2.86 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.06 Total: -64.32 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.13 Total: -13.18 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.09 -7.43 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675222050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.940 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds