Wall clock time and date at job start Tue Mar 31 2020 23:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47143 * 2 1 4 4 C 1.53000 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47356 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 3 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 3 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 3 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21568 * 119.99816 * 0.02562 * 18 17 5 20 20 C 1.47760 * 119.99967 * 179.97438 * 18 17 5 21 21 N 1.32892 * 119.68873 * 359.73596 * 20 18 17 22 22 C 1.31288 * 121.71692 * 179.70992 * 21 20 18 23 23 C 1.39359 * 120.88495 * 0.55882 * 22 21 20 24 24 O 1.35716 * 120.36548 * 179.74987 * 23 22 21 25 25 C 1.42905 * 116.99743 * 359.97438 * 24 23 22 26 26 C 1.39053 * 119.27684 * 359.72719 * 23 22 21 27 27 C 1.38696 * 118.42384 * 0.02562 * 26 23 22 28 28 F 1.35096 * 120.46203 * 179.97438 * 27 26 23 29 29 H 1.09006 * 109.47301 * 299.99986 * 1 2 3 30 30 H 1.09004 * 109.47499 * 60.00121 * 1 2 3 31 31 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47271 * 240.00078 * 2 1 3 33 33 H 1.09004 * 109.47499 * 119.99879 * 2 1 3 34 34 H 1.09006 * 109.47011 * 59.99836 * 3 2 1 35 35 H 1.08994 * 109.46764 * 300.00195 * 3 2 1 36 36 H 1.08996 * 109.46705 * 59.99742 * 4 3 2 37 37 H 1.09004 * 109.46936 * 300.00219 * 4 3 2 38 38 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 39 39 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 41 41 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 43 43 H 1.07997 * 119.55744 * 180.29039 * 22 21 20 44 44 H 1.08999 * 109.46892 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47242 * 300.00423 * 25 24 23 46 46 H 1.08999 * 109.46561 * 60.00613 * 25 24 23 47 47 H 1.07995 * 120.78871 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8869 0.1277 8 7 6.1029 4.2595 0.0084 9 6 7.4467 4.5097 0.0912 10 1 8.1392 3.6951 0.2440 11 6 7.9187 5.8101 -0.0212 12 7 7.0747 6.8028 -0.2069 13 14 9.7519 6.1514 0.0911 14 1 10.3525 6.0802 -1.2652 15 1 9.9693 7.5065 0.6583 16 1 10.3910 5.1387 0.9693 17 7 3.6929 3.5403 -1.2505 18 6 2.4756 4.1072 -1.3660 19 8 1.6989 4.0752 -0.4313 20 6 2.0854 4.7687 -2.6284 21 7 2.9416 4.8055 -3.6441 22 6 2.6345 5.3776 -4.7852 23 6 1.3929 5.9824 -4.9710 24 8 1.0884 6.5751 -6.1533 25 6 2.0907 6.5443 -7.1715 26 6 0.4690 5.9716 -3.9318 27 6 0.8221 5.3547 -2.7408 28 9 -0.0435 5.3206 -1.7042 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 6.0356 2.2739 -0.6639 39 1 5.8893 2.4800 1.0980 40 1 5.4809 4.9910 -0.1284 41 1 7.4045 7.7117 -0.2851 42 1 4.3126 3.5662 -1.9962 43 1 3.3555 5.3833 -5.5893 44 1 1.7197 7.0518 -8.0619 45 1 2.9881 7.0487 -6.8134 46 1 2.3287 5.5090 -7.4156 47 1 -0.5006 6.4326 -4.0493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675222050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:53 Heat of formation + Delta-G solvation = -103.117074 kcal Electronic energy + Delta-G solvation = -30076.220235 eV Core-core repulsion = 25787.211747 eV Total energy + Delta-G solvation = -4289.008488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.16461 -41.96572 -40.87546 -39.13606 -37.84260 -36.25759 -35.13010 -33.66635 -32.97415 -32.06484 -31.17641 -28.78896 -28.42980 -26.08773 -25.65650 -24.32683 -23.75660 -22.54945 -21.80795 -21.44561 -19.72121 -19.42614 -19.13209 -18.59975 -17.52861 -17.37349 -17.31068 -16.74744 -16.61029 -16.41035 -16.06129 -15.83340 -15.65747 -15.28102 -15.18929 -14.82687 -14.53422 -14.40027 -14.32235 -14.10516 -13.90391 -13.75099 -13.50358 -13.15143 -12.93843 -12.86190 -12.78761 -12.54176 -12.49517 -12.11962 -12.01773 -11.87596 -11.84393 -11.41724 -11.39803 -11.27970 -10.95828 -10.76802 -10.74044 -10.01110 -9.66856 -8.99906 -7.92233 -5.22369 -0.63150 -0.19405 1.48524 1.50436 1.58806 1.60305 1.81548 2.10146 2.55137 2.57278 2.89815 3.03070 3.33117 3.41658 3.54270 3.65745 3.74778 4.00144 4.02651 4.07884 4.24143 4.31283 4.35358 4.39955 4.41201 4.42986 4.55789 4.60774 4.68390 4.79572 4.84800 4.91775 4.94294 4.99637 5.07965 5.13733 5.14374 5.22453 5.33174 5.41221 5.51540 5.56381 5.62340 5.94923 6.27478 6.32762 6.61484 7.16969 7.34638 8.08262 8.32270 9.30944 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006834 B = 0.004286 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4096.008808 B = 6531.641629 C = 9726.406438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.116 4.116 5 C 0.145 3.855 6 H 0.062 0.938 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.243 4.243 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.269 1.269 17 N -0.685 5.685 18 C 0.567 3.433 19 O -0.554 6.554 20 C -0.017 4.017 21 N -0.403 5.403 22 C 0.015 3.985 23 C 0.146 3.854 24 O -0.305 6.305 25 C 0.006 3.994 26 C -0.158 4.158 27 C 0.139 3.861 28 F -0.113 7.113 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.412 0.588 43 H 0.204 0.796 44 H 0.131 0.869 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -7.766 -14.579 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.143 4.143 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.080 0.920 7 C 0.020 3.980 8 N -0.387 5.387 9 C -0.375 4.375 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.212 1.212 15 H -0.227 1.227 16 H -0.194 1.194 17 N -0.335 5.335 18 C 0.352 3.648 19 O -0.433 6.433 20 C -0.155 4.155 21 N -0.115 5.115 22 C -0.149 4.149 23 C 0.096 3.904 24 O -0.215 6.215 25 C -0.088 4.088 26 C -0.185 4.185 27 C 0.116 3.884 28 F -0.091 7.091 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.248 0.752 43 H 0.221 0.779 44 H 0.149 0.851 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.740 -8.166 -13.753 21.086 hybrid contribution 0.282 1.390 -0.072 1.421 sum -13.458 -6.775 -13.825 20.449 Atomic orbital electron populations 1.21737 0.95883 1.01845 1.01175 1.21534 0.95977 0.95820 1.02404 1.21552 0.94760 0.96798 1.01216 1.21914 0.95921 0.93931 1.03704 1.21251 0.94466 0.94284 0.86002 0.91987 1.21115 0.90629 0.86899 0.99391 1.42540 1.04589 1.03752 1.87777 1.19655 0.84939 0.92760 1.40157 0.90166 1.25565 1.01901 0.95631 1.03523 1.69856 1.34736 0.99011 1.58432 0.85127 0.80161 0.76679 0.77680 1.21172 1.22655 1.19357 1.45723 1.15290 1.55403 1.17111 1.17758 0.82586 0.78349 0.86075 1.90805 1.52272 1.60505 1.39718 1.21118 0.92070 1.06318 0.95993 1.67489 1.31380 1.13256 0.99366 1.23637 0.96118 0.98783 0.96377 1.19993 0.92822 0.90635 0.86999 1.86077 1.44162 1.71132 1.20133 1.23673 0.91428 1.04479 0.89196 1.20994 1.03459 1.04337 0.89669 1.18407 0.87411 0.97082 0.85509 1.91593 1.67666 1.93757 1.56108 0.93409 0.93881 0.91330 0.91614 0.91131 0.93572 0.93912 0.90484 0.89298 0.94236 0.94054 0.79569 0.94229 0.75157 0.77916 0.85056 0.91010 0.90194 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.12 -2.69 5.93 30.59 0.18 -2.50 16 3 C -0.11 -3.04 3.81 30.60 0.12 -2.93 16 4 C -0.12 -3.21 4.89 30.59 0.15 -3.06 16 5 C 0.14 5.13 2.42 44.99 0.11 5.23 16 6 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 7 C 0.15 5.77 5.82 86.38 0.50 6.27 16 8 N -0.74 -38.09 5.43 -343.45 -1.87 -39.95 16 9 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 10 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 11 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 12 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 13 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 N -0.69 -24.84 4.46 -445.49 -1.99 -26.83 16 18 C 0.57 21.50 6.36 86.76 0.55 22.05 16 19 O -0.55 -23.27 12.44 -3.93 -0.05 -23.31 16 20 C -0.02 -0.58 6.75 41.86 0.28 -0.30 16 21 N -0.40 -11.96 9.52 -184.39 -1.76 -13.71 16 22 C 0.01 0.32 10.21 85.04 0.87 1.18 16 23 C 0.15 2.86 6.72 22.74 0.15 3.01 16 24 O -0.30 -4.55 10.50 -90.37 -0.95 -5.50 16 25 C 0.01 0.04 9.82 113.37 1.11 1.15 16 26 C -0.16 -3.50 10.10 22.57 0.23 -3.27 16 27 C 0.14 4.15 7.31 22.74 0.17 4.31 16 28 F -0.11 -3.76 15.54 44.97 0.70 -3.06 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.51 7.84 -2.38 -0.02 1.49 16 35 H 0.04 1.40 5.65 -2.39 -0.01 1.39 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.37 20.98 7.33 -92.71 -0.68 20.30 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.41 14.94 7.92 -92.71 -0.73 14.21 16 43 H 0.20 2.83 6.31 -2.91 -0.02 2.82 16 44 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.07 0.47 7.67 -2.39 -0.02 0.45 16 46 H 0.08 0.35 7.67 -2.39 -0.02 0.33 16 47 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -73.57 390.96 2.43 -71.13 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.41 Total: 40.91 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.44 Total: 12.17 kcal Atomic # 7 Polarization: -135.17 SS G_CDS: -5.33 Total: -140.49 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.00 Total: -28.82 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.70 Total: -3.06 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.57 2.43 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675222050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.982 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds