Wall clock time and date at job start Tue Mar 31 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29022 * 124.92055 * 2 1 4 4 C 1.31787 * 117.12663 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.74674 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47491 * 305.02586 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 109.46948 * 35.00281 * 10 9 7 12 12 C 1.52999 * 109.47481 * 154.99940 * 10 9 7 13 13 N 1.46501 * 109.47252 * 305.00775 * 12 10 9 14 14 C 1.36941 * 119.99931 * 179.97438 * 13 12 10 15 15 H 1.07992 * 119.99932 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99934 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00351 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47005 * 90.00417 * 18 16 14 20 20 H 1.48507 * 109.47019 * 210.00049 * 18 16 14 21 21 H 1.48493 * 109.47322 * 330.00203 * 18 16 14 22 22 C 1.52997 * 109.47288 * 275.00460 * 10 9 7 23 23 C 1.53005 * 109.47302 * 59.99680 * 22 10 9 24 24 C 1.53000 * 109.47350 * 179.97438 * 22 10 9 25 25 C 1.52997 * 109.47394 * 299.99753 * 22 10 9 26 26 C 1.33635 * 114.50017 * 0.23594 * 4 3 2 27 27 S 1.70980 * 124.91542 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47435 * 89.99516 * 1 2 3 29 29 H 1.08997 * 109.47411 * 210.00217 * 1 2 3 30 30 H 1.09005 * 109.46887 * 329.99950 * 1 2 3 31 31 H 1.09004 * 109.46801 * 185.02625 * 5 4 3 32 32 H 1.09000 * 109.47461 * 65.03157 * 5 4 3 33 33 H 1.09004 * 109.47066 * 60.00201 * 6 5 4 34 34 H 1.08994 * 109.47405 * 300.00031 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.09006 * 109.46830 * 65.00022 * 12 10 9 37 37 H 1.08994 * 109.47535 * 185.00115 * 12 10 9 38 38 H 0.97002 * 119.99978 * 359.97438 * 13 12 10 39 39 H 0.96989 * 120.00412 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47005 * 60.00136 * 23 22 10 41 41 H 1.09003 * 109.47132 * 179.97438 * 23 22 10 42 42 H 1.08998 * 109.46918 * 300.00250 * 23 22 10 43 43 H 1.09007 * 109.47278 * 59.99676 * 24 22 10 44 44 H 1.09000 * 109.47626 * 179.97438 * 24 22 10 45 45 H 1.09001 * 109.47157 * 299.99986 * 24 22 10 46 46 H 1.08998 * 109.46943 * 59.99679 * 25 22 10 47 47 H 1.08998 * 109.47567 * 179.97438 * 25 22 10 48 48 H 1.09000 * 109.46685 * 300.00325 * 25 22 10 49 49 H 1.07997 * 126.03917 * 179.76748 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5307 2.0244 0.0000 6 6 4.2335 2.9493 -1.1819 7 6 5.2127 4.0949 -1.1820 8 8 6.0647 4.1644 -0.3217 9 7 5.1454 5.0388 -2.1416 10 6 6.1010 6.1492 -2.1452 11 1 7.0698 5.7959 -1.7919 12 6 6.2447 6.6940 -3.5677 13 7 6.6132 5.6031 -4.4735 14 6 6.7975 5.8533 -5.8072 15 1 6.6708 6.8546 -6.1913 16 6 7.1471 4.8198 -6.6653 17 7 7.3238 5.0601 -7.9473 18 14 7.3669 3.0879 -6.0007 19 1 6.0702 2.3664 -6.0607 20 1 8.3729 2.3668 -6.8213 21 1 7.8322 3.1535 -4.5921 22 6 5.5958 7.2600 -1.2223 23 6 5.4522 6.7152 0.2003 24 6 6.5941 8.4194 -1.2255 25 6 4.2360 7.7559 -1.7181 26 6 3.9354 -0.4007 -0.0040 27 16 2.4856 -1.4020 0.0006 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 5.5449 1.6350 -0.0894 32 1 4.4370 2.5832 0.9312 33 1 3.2193 3.3387 -1.0925 34 1 4.3273 2.3907 -2.1131 35 1 4.4641 4.9832 -2.8299 36 1 5.2974 7.1278 -3.8880 37 1 7.0200 7.4598 -3.5869 38 1 6.7265 4.7036 -4.1285 39 1 7.5685 4.3380 -8.5468 40 1 6.4209 6.3619 0.5535 41 1 5.0926 7.5067 0.8579 42 1 4.7411 5.8891 0.2029 43 1 6.6969 8.8076 -2.2389 44 1 6.2340 9.2109 -0.5684 45 1 7.5627 8.0658 -0.8720 46 1 3.5249 6.9298 -1.7154 47 1 3.8758 8.5469 -1.0603 48 1 4.3383 8.1440 -2.7315 49 1 4.9544 -0.7583 -0.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677287451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:17 Heat of formation + Delta-G solvation = 1.716583 kcal Electronic energy + Delta-G solvation = -27835.493332 eV Core-core repulsion = 24117.243948 eV Total energy + Delta-G solvation = -3718.249383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40458 -39.91487 -37.57040 -34.58887 -34.03162 -33.25477 -31.53902 -31.18025 -28.66834 -28.10773 -27.14982 -26.87628 -25.29105 -23.53491 -22.59149 -21.32032 -20.22999 -19.92606 -18.65856 -17.75774 -17.70599 -16.77319 -15.97640 -15.80021 -15.37912 -15.26283 -14.81418 -14.25060 -14.22154 -14.02027 -13.70222 -13.63681 -13.40811 -13.23580 -13.04727 -12.77865 -12.72957 -12.51046 -12.28748 -11.97864 -11.96021 -11.85279 -11.66245 -11.53858 -11.39994 -11.20801 -11.07338 -10.88330 -10.72453 -10.53724 -10.31450 -10.00204 -9.89085 -9.66619 -9.63204 -9.58588 -8.94161 -8.90621 -8.65973 -7.26617 -5.80328 -3.15993 0.45577 1.09753 1.46925 2.52190 2.86586 3.33252 3.38951 3.41826 3.45236 3.78889 4.55908 4.60387 4.81114 4.84762 4.88477 4.99400 5.00574 5.05381 5.08077 5.10579 5.22190 5.37972 5.44751 5.48724 5.50140 5.57481 5.64822 5.74065 5.81211 5.82448 5.87901 5.88469 5.92501 6.01900 6.07737 6.09820 6.13537 6.27775 6.38513 6.41212 6.46569 6.58391 6.68753 6.89643 7.50570 7.78418 7.95617 8.38485 8.47397 9.17617 9.89935 10.09626 11.38015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003373 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.104454 B = 8299.801557 C =10474.482569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.050 3.950 3 N -0.468 5.468 4 C 0.075 3.925 5 C -0.026 4.026 6 C -0.136 4.136 7 C 0.513 3.487 8 O -0.544 6.544 9 N -0.714 5.714 10 C 0.145 3.855 11 H 0.086 0.914 12 C 0.146 3.854 13 N -0.755 5.755 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.075 4.075 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.258 4.258 27 S 0.107 5.893 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.404 0.596 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.979 -7.882 19.508 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.229 4.229 3 N -0.184 5.184 4 C -0.057 4.057 5 C -0.066 4.066 6 C -0.176 4.176 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.364 5.364 10 C 0.040 3.960 11 H 0.104 0.896 12 C 0.018 3.982 13 N -0.401 5.401 14 C -0.374 4.374 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.077 4.077 23 C -0.186 4.186 24 C -0.199 4.199 25 C -0.199 4.199 26 C -0.396 4.396 27 S 0.361 5.639 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.238 0.762 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.812 -8.284 19.893 25.070 hybrid contribution 0.557 -0.727 -0.140 0.927 sum -12.255 -9.011 19.752 24.931 Atomic orbital electron populations 1.20451 0.85127 1.04187 1.04045 1.27063 1.01796 0.90930 1.03072 1.66082 1.04532 1.31537 1.16208 1.20335 0.90079 0.94342 1.00898 1.19908 0.95739 0.91775 0.99186 1.21581 1.00172 0.95479 1.00373 1.20495 0.85210 0.82989 0.81311 1.90680 1.37191 1.76890 1.37413 1.46027 1.35162 1.25387 1.29826 1.21322 0.92684 0.85688 0.96301 0.89588 1.21084 0.98766 0.91723 0.86586 1.42714 1.85433 1.06137 1.05800 1.19045 1.39729 0.96641 0.81982 0.89142 1.24648 1.01583 0.97419 0.95266 1.69693 1.54199 1.31781 1.02403 0.86602 0.77789 0.86314 0.78207 1.21104 1.21668 1.20341 1.20878 0.95972 0.95134 0.95693 1.21878 1.02418 0.99648 0.94647 1.21898 0.98630 0.97158 1.02260 1.21916 0.96048 1.00596 1.01363 1.26856 1.03188 0.95699 1.13888 1.83953 0.98169 1.12995 1.68788 0.89441 0.90150 0.89195 0.89404 0.89300 0.88192 0.89054 0.76177 0.94520 0.93945 0.80510 0.93035 0.92075 0.94004 0.92903 0.91802 0.92837 0.92598 0.92863 0.93153 0.91821 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.00 0.38 -0.10 16 2 C 0.05 0.48 7.39 -13.46 -0.10 0.38 16 3 N -0.47 -5.55 10.34 -8.06 -0.08 -5.63 16 4 C 0.07 0.87 6.08 -84.23 -0.51 0.36 16 5 C -0.03 -0.30 5.00 -27.89 -0.14 -0.44 16 6 C -0.14 -1.67 5.60 -27.88 -0.16 -1.82 16 7 C 0.51 7.56 6.18 -10.98 -0.07 7.50 16 8 O -0.54 -9.28 13.11 5.55 0.07 -9.20 16 9 N -0.71 -10.54 3.64 -53.81 -0.20 -10.73 16 10 C 0.14 2.29 1.69 -67.93 -0.11 2.17 16 11 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 12 C 0.15 2.69 5.10 -4.04 -0.02 2.66 16 13 N -0.75 -17.47 5.24 -59.91 -0.31 -17.78 16 14 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 18 Si 0.88 22.17 27.73 -169.99 -4.71 17.46 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 22 C -0.08 -1.00 0.62 -154.51 -0.10 -1.09 16 23 C -0.13 -1.73 7.00 37.16 0.26 -1.47 16 24 C -0.14 -1.76 8.12 37.16 0.30 -1.46 16 25 C -0.14 -1.72 7.97 37.16 0.30 -1.43 16 26 C -0.26 -2.60 11.07 29.12 0.32 -2.28 16 27 S 0.11 0.92 23.18 -107.50 -2.49 -1.58 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.03 7.99 -51.93 -0.41 0.61 16 32 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.40 5.66 8.60 -40.82 -0.35 5.31 16 36 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 37 H 0.04 0.80 6.71 -51.93 -0.35 0.45 16 38 H 0.36 8.40 5.20 -40.82 -0.21 8.19 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.75 5.78 -51.93 -0.30 0.45 16 43 H 0.06 0.81 6.55 -51.92 -0.34 0.47 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.64 7.60 -51.93 -0.39 0.24 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 49 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -33.14 397.96 -8.89 -42.02 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.03 Total: 11.67 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.10 Total: -3.87 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.18 Total: -62.50 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.14 -8.89 -42.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677287451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.740 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds