Wall clock time and date at job start Tue Mar 31 2020 22:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29022 * 124.92055 * 2 1 4 4 C 1.31787 * 117.12663 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.74674 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47491 * 305.02586 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 109.46948 * 35.00281 * 10 9 7 12 12 C 1.52999 * 109.47481 * 154.99940 * 10 9 7 13 13 N 1.46501 * 109.47252 * 305.00775 * 12 10 9 14 14 C 1.36941 * 119.99931 * 179.97438 * 13 12 10 15 15 H 1.07992 * 119.99932 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99934 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00351 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47005 * 90.00417 * 18 16 14 20 20 H 1.48507 * 109.47019 * 210.00049 * 18 16 14 21 21 H 1.48493 * 109.47322 * 330.00203 * 18 16 14 22 22 C 1.52997 * 109.47288 * 275.00460 * 10 9 7 23 23 C 1.53005 * 109.47302 * 59.99680 * 22 10 9 24 24 C 1.53000 * 109.47350 * 179.97438 * 22 10 9 25 25 C 1.52997 * 109.47394 * 299.99753 * 22 10 9 26 26 C 1.33635 * 114.50017 * 0.23594 * 4 3 2 27 27 S 1.70980 * 124.91542 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47435 * 89.99516 * 1 2 3 29 29 H 1.08997 * 109.47411 * 210.00217 * 1 2 3 30 30 H 1.09005 * 109.46887 * 329.99950 * 1 2 3 31 31 H 1.09004 * 109.46801 * 185.02625 * 5 4 3 32 32 H 1.09000 * 109.47461 * 65.03157 * 5 4 3 33 33 H 1.09004 * 109.47066 * 60.00201 * 6 5 4 34 34 H 1.08994 * 109.47405 * 300.00031 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.09006 * 109.46830 * 65.00022 * 12 10 9 37 37 H 1.08994 * 109.47535 * 185.00115 * 12 10 9 38 38 H 0.97002 * 119.99978 * 359.97438 * 13 12 10 39 39 H 0.96989 * 120.00412 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47005 * 60.00136 * 23 22 10 41 41 H 1.09003 * 109.47132 * 179.97438 * 23 22 10 42 42 H 1.08998 * 109.46918 * 300.00250 * 23 22 10 43 43 H 1.09007 * 109.47278 * 59.99676 * 24 22 10 44 44 H 1.09000 * 109.47626 * 179.97438 * 24 22 10 45 45 H 1.09001 * 109.47157 * 299.99986 * 24 22 10 46 46 H 1.08998 * 109.46943 * 59.99679 * 25 22 10 47 47 H 1.08998 * 109.47567 * 179.97438 * 25 22 10 48 48 H 1.09000 * 109.46685 * 300.00325 * 25 22 10 49 49 H 1.07997 * 126.03917 * 179.76748 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5307 2.0244 0.0000 6 6 4.2335 2.9493 -1.1819 7 6 5.2127 4.0949 -1.1820 8 8 6.0647 4.1644 -0.3217 9 7 5.1454 5.0388 -2.1416 10 6 6.1010 6.1492 -2.1452 11 1 7.0698 5.7959 -1.7919 12 6 6.2447 6.6940 -3.5677 13 7 6.6132 5.6031 -4.4735 14 6 6.7975 5.8533 -5.8072 15 1 6.6708 6.8546 -6.1913 16 6 7.1471 4.8198 -6.6653 17 7 7.3238 5.0601 -7.9473 18 14 7.3669 3.0879 -6.0007 19 1 6.0702 2.3664 -6.0607 20 1 8.3729 2.3668 -6.8213 21 1 7.8322 3.1535 -4.5921 22 6 5.5958 7.2600 -1.2223 23 6 5.4522 6.7152 0.2003 24 6 6.5941 8.4194 -1.2255 25 6 4.2360 7.7559 -1.7181 26 6 3.9354 -0.4007 -0.0040 27 16 2.4856 -1.4020 0.0006 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 5.5449 1.6350 -0.0894 32 1 4.4370 2.5832 0.9312 33 1 3.2193 3.3387 -1.0925 34 1 4.3273 2.3907 -2.1131 35 1 4.4641 4.9832 -2.8299 36 1 5.2974 7.1278 -3.8880 37 1 7.0200 7.4598 -3.5869 38 1 6.7265 4.7036 -4.1285 39 1 7.5685 4.3380 -8.5468 40 1 6.4209 6.3619 0.5535 41 1 5.0926 7.5067 0.8579 42 1 4.7411 5.8891 0.2029 43 1 6.6969 8.8076 -2.2389 44 1 6.2340 9.2109 -0.5684 45 1 7.5627 8.0658 -0.8720 46 1 3.5249 6.9298 -1.7154 47 1 3.8758 8.5469 -1.0603 48 1 4.3383 8.1440 -2.7315 49 1 4.9544 -0.7583 -0.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677287451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:16 Heat of formation + Delta-G solvation = -19.565515 kcal Electronic energy + Delta-G solvation = -27836.416193 eV Core-core repulsion = 24117.243948 eV Total energy + Delta-G solvation = -3719.172244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47035 -40.82994 -38.79479 -36.34727 -34.89064 -34.58337 -33.33665 -32.17235 -29.80129 -29.21322 -28.15172 -27.93607 -26.41710 -25.14333 -23.47763 -22.91604 -21.39646 -20.66962 -20.11600 -19.41247 -18.54173 -17.93234 -17.20393 -17.03533 -16.58260 -16.19023 -16.04902 -15.77110 -15.44284 -14.95258 -14.87791 -14.80701 -14.49953 -14.46204 -14.25622 -14.04420 -13.72290 -13.53712 -13.32371 -13.11757 -13.02641 -12.99074 -12.82582 -12.79506 -12.55928 -12.47288 -12.34690 -12.19370 -12.01911 -11.97705 -11.84627 -11.62227 -11.30375 -11.01693 -10.77190 -10.62460 -10.37737 -9.89954 -9.64142 -9.30661 -8.04555 -5.37358 -0.26006 0.41964 0.74684 1.33111 1.35972 1.42736 1.68491 1.73661 2.28479 2.44501 3.11496 3.27353 3.46873 3.70465 3.83865 3.94909 4.02550 4.03580 4.06634 4.19814 4.31253 4.33477 4.43264 4.50343 4.58926 4.63599 4.66339 4.67977 4.83255 4.84346 4.89331 4.92336 4.96820 5.00806 5.06208 5.08325 5.09524 5.14004 5.24530 5.27731 5.32441 5.45018 5.55540 5.64343 5.75714 6.19256 6.59915 6.77315 7.05447 7.29617 7.81172 7.99669 9.16954 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003373 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.104454 B = 8299.801557 C =10474.482569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.498 5.498 4 C 0.057 3.943 5 C -0.019 4.019 6 C -0.125 4.125 7 C 0.513 3.487 8 O -0.568 6.568 9 N -0.713 5.713 10 C 0.155 3.845 11 H 0.063 0.937 12 C 0.146 3.854 13 N -0.756 5.756 14 C -0.229 4.229 15 H 0.063 0.937 16 C -0.058 4.058 17 N -0.981 5.981 18 Si 0.947 3.053 19 H -0.272 1.272 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.070 4.070 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.270 4.270 27 S 0.146 5.854 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.408 0.592 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.363 0.637 39 H 0.258 0.742 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 -8.981 21.199 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.238 4.238 3 N -0.214 5.214 4 C -0.074 4.074 5 C -0.060 4.060 6 C -0.165 4.165 7 C 0.301 3.699 8 O -0.448 6.448 9 N -0.363 5.363 10 C 0.050 3.950 11 H 0.081 0.919 12 C 0.020 3.980 13 N -0.402 5.402 14 C -0.360 4.360 15 H 0.081 0.919 16 C -0.249 4.249 17 N -0.632 5.632 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.071 4.071 23 C -0.177 4.177 24 C -0.199 4.199 25 C -0.195 4.195 26 C -0.409 4.409 27 S 0.401 5.599 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.244 0.756 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.196 0.804 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.411 -9.372 21.628 27.628 hybrid contribution 1.013 -0.326 -0.629 1.236 sum -13.398 -9.699 20.999 26.731 Atomic orbital electron populations 1.20618 0.82950 1.05310 1.04999 1.27668 1.03248 0.90994 1.01897 1.66090 1.04762 1.32870 1.17723 1.20295 0.90228 0.94634 1.02290 1.19786 0.95873 0.91884 0.98450 1.21520 0.99744 0.94510 1.00742 1.20890 0.85148 0.83177 0.80658 1.90673 1.38321 1.77445 1.38324 1.46017 1.34952 1.25278 1.30101 1.21116 0.92296 0.86772 0.94814 0.91862 1.21221 0.98898 0.90521 0.87331 1.42710 1.85359 1.07417 1.04706 1.19036 1.37722 0.95321 0.83908 0.91926 1.25379 1.02451 1.01627 0.95478 1.69859 1.56380 1.32980 1.03936 0.85528 0.77922 0.81229 0.77791 1.19793 1.22365 1.19104 1.20840 0.96895 0.94427 0.94979 1.21767 1.01205 0.99862 0.94843 1.21898 0.98228 0.97300 1.02448 1.21881 0.95143 1.01163 1.01359 1.27127 1.04687 0.95829 1.13280 1.83784 0.96683 1.11698 1.67784 0.88434 0.87930 0.89182 0.89714 0.90215 0.87277 0.88785 0.75603 0.93409 0.94094 0.80355 0.93336 0.93874 0.92184 0.93743 0.92276 0.90835 0.93178 0.92673 0.91406 0.92345 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.46 71.23 0.75 -0.03 16 2 C 0.04 0.69 7.39 88.52 0.65 1.34 16 3 N -0.50 -11.23 10.34 -179.41 -1.86 -13.08 16 4 C 0.06 1.26 6.08 41.52 0.25 1.52 16 5 C -0.02 -0.45 5.00 29.85 0.15 -0.30 16 6 C -0.12 -2.94 5.60 29.85 0.17 -2.78 16 7 C 0.51 14.71 6.18 87.66 0.54 15.25 16 8 O -0.57 -19.20 13.11 -3.04 -0.04 -19.24 16 9 N -0.71 -20.28 3.64 -442.54 -1.61 -21.89 16 10 C 0.16 4.77 1.69 44.99 0.08 4.85 16 11 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 12 C 0.15 5.29 5.10 86.38 0.44 5.73 16 13 N -0.76 -34.53 5.24 -343.46 -1.80 -36.33 16 14 C -0.23 -12.81 10.47 84.03 0.88 -11.93 16 15 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 16 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 17 N -0.98 -62.37 13.97 21.65 0.30 -62.06 16 18 Si 0.95 45.83 27.73 68.60 1.90 47.73 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 21 H -0.27 -12.18 6.52 99.48 0.65 -11.53 16 22 C -0.07 -1.75 0.62 -52.18 -0.03 -1.78 16 23 C -0.12 -3.05 7.00 71.98 0.50 -2.54 16 24 C -0.14 -3.28 8.12 71.98 0.58 -2.70 16 25 C -0.14 -3.05 7.97 71.98 0.57 -2.47 16 26 C -0.27 -5.08 11.07 66.77 0.74 -4.34 16 27 S 0.15 2.20 23.18 -56.49 -1.31 0.89 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.96 7.99 -2.38 -0.02 1.94 16 32 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 33 H 0.11 2.38 8.08 -2.38 -0.02 2.36 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 10.88 8.60 -92.71 -0.80 10.08 16 36 H 0.05 1.67 6.17 -2.38 -0.01 1.65 16 37 H 0.04 1.53 6.71 -2.39 -0.02 1.51 16 38 H 0.36 16.41 5.20 -92.71 -0.48 15.93 16 39 H 0.26 15.65 8.31 -92.72 -0.77 14.88 16 40 H 0.04 1.25 7.53 -2.39 -0.02 1.23 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.04 1.20 5.78 -2.39 -0.01 1.19 16 43 H 0.06 1.43 6.55 -2.38 -0.02 1.41 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.35 6.32 -2.39 -0.02 1.34 16 49 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -71.35 397.96 1.95 -69.39 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.38 Total: 37.69 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.74 Total: -3.09 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -4.96 Total: -133.37 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.04 Total: -19.24 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -71.35 1.95 -69.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677287451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.826 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds