Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47421 * 34.99793 * 12 11 9 14 14 C 1.53003 * 109.47043 * 154.99778 * 12 11 9 15 15 N 1.46502 * 109.47244 * 305.00430 * 14 12 11 16 16 C 1.36937 * 120.00024 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00312 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99757 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99877 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 89.99863 * 20 18 16 22 22 H 1.48497 * 109.47238 * 210.00508 * 20 18 16 23 23 H 1.48502 * 109.46809 * 329.99923 * 20 18 16 24 24 C 1.52999 * 109.47389 * 274.99341 * 12 11 9 25 25 C 1.52999 * 109.46785 * 60.00554 * 24 12 11 26 26 C 1.53000 * 109.47232 * 179.97438 * 24 12 11 27 27 C 1.52999 * 109.47403 * 300.00576 * 24 12 11 28 28 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 29 29 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 30 30 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 31 31 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 33 33 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 34 34 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 35 35 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 36 36 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47308 * 64.99748 * 14 12 11 38 38 H 1.08995 * 109.47602 * 184.99589 * 14 12 11 39 39 H 0.96998 * 119.99670 * 359.97438 * 15 14 12 40 40 H 0.96998 * 119.99643 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47561 * 60.00068 * 25 24 12 42 42 H 1.09001 * 109.47643 * 179.97438 * 25 24 12 43 43 H 1.09007 * 109.47095 * 299.99995 * 25 24 12 44 44 H 1.08997 * 109.46927 * 60.00970 * 26 24 12 45 45 H 1.09000 * 109.46954 * 180.02562 * 26 24 12 46 46 H 1.08998 * 109.47527 * 300.00421 * 26 24 12 47 47 H 1.09007 * 109.47017 * 59.99674 * 27 24 12 48 48 H 1.09000 * 109.47286 * 179.97438 * 27 24 12 49 49 H 1.09000 * 109.47048 * 299.99808 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3811 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 1 -0.4910 -6.5349 -1.7569 14 6 -0.5548 -6.6706 -3.9059 15 7 -1.5850 -5.6455 -4.0912 16 6 -2.3867 -5.6732 -5.2010 17 1 -2.2594 -6.4504 -5.9399 18 6 -3.3631 -4.7022 -5.3763 19 7 -3.5186 -3.7552 -4.4755 20 14 -4.4563 -4.7395 -6.8905 21 1 -5.6667 -5.5518 -6.6072 22 1 -4.8606 -3.3549 -7.2434 23 1 -3.7104 -5.3416 -8.0247 24 6 1.3484 -7.4055 -2.4637 25 6 2.0961 -7.1463 -1.1543 26 6 0.7958 -8.8322 -2.4610 27 6 2.3085 -7.2320 -3.6423 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.2059 1.8027 0.0057 32 1 2.3811 -3.1881 0.5260 33 1 0.7217 -2.5441 0.5181 34 1 0.8092 -2.3490 -1.9522 35 1 2.4686 -2.9931 -1.9444 36 1 0.9002 -4.5953 -3.4391 37 1 0.1475 -6.6344 -4.7388 38 1 -1.0234 -7.6539 -3.8683 39 1 -1.6996 -4.9476 -3.4274 40 1 -4.2006 -3.0765 -4.5982 41 1 1.4121 -7.2699 -0.3146 42 1 2.9190 -7.8548 -1.0594 43 1 2.4897 -6.1298 -1.1557 44 1 0.2629 -9.0172 -3.3937 45 1 1.6189 -9.5404 -2.3660 46 1 0.1121 -8.9555 -1.6212 47 1 2.7021 -6.2154 -3.6436 48 1 3.1318 -7.9399 -3.5474 49 1 1.7758 -7.4166 -4.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677296775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = -2.172150 kcal Electronic energy + Delta-G solvation = -27958.153110 eV Core-core repulsion = 24239.735098 eV Total energy + Delta-G solvation = -3718.418012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23957 -39.87092 -37.54524 -34.44624 -34.35006 -33.18016 -31.23128 -30.87997 -28.19226 -27.52950 -27.13802 -26.51726 -25.09616 -23.94095 -23.15287 -21.45244 -20.13806 -18.95350 -18.54945 -18.25658 -17.30054 -16.69409 -15.96922 -15.81069 -15.37882 -15.01298 -14.77683 -14.35656 -13.92602 -13.76013 -13.70692 -13.56819 -13.20609 -13.06443 -12.81140 -12.69881 -12.61117 -12.46712 -12.10623 -12.08810 -11.90511 -11.80605 -11.55157 -11.37775 -11.22008 -11.08706 -10.89953 -10.83660 -10.72731 -10.51069 -10.24321 -9.94279 -9.80707 -9.76203 -9.61355 -9.32820 -8.91644 -8.82188 -8.55621 -6.96761 -5.80555 -3.09778 0.54973 1.20488 1.58602 2.64733 2.94889 3.40616 3.46047 3.47571 3.52162 4.08733 4.54196 4.67579 4.85882 4.94103 4.97163 4.99707 5.03645 5.13025 5.22651 5.31852 5.51777 5.53691 5.57849 5.59735 5.66540 5.72427 5.78601 5.78963 5.89435 5.91872 5.95960 5.97255 6.03419 6.08220 6.11824 6.16348 6.24627 6.30584 6.45955 6.46087 6.51425 6.63662 6.74248 6.98594 7.57508 7.65856 7.88647 8.37622 8.56666 9.49571 10.05793 10.41196 11.41782 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.003396 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.025636 B = 8243.733287 C =10740.043440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.062 3.938 3 N -0.466 5.466 4 C 0.014 3.986 5 S 0.109 5.891 6 C -0.211 4.211 7 C -0.023 4.023 8 C -0.138 4.138 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.150 3.850 13 H 0.086 0.914 14 C 0.141 3.859 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.076 4.076 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.197 0.803 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.403 0.597 37 H 0.028 0.972 38 H 0.034 0.966 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.231 2.360 8.625 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 N -0.180 5.180 4 C -0.284 4.284 5 S 0.362 5.638 6 C -0.332 4.332 7 C -0.063 4.063 8 C -0.178 4.178 9 C 0.303 3.697 10 O -0.423 6.423 11 N -0.357 5.357 12 C 0.045 3.955 13 H 0.104 0.896 14 C 0.014 3.986 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.186 4.186 26 C -0.199 4.199 27 C -0.198 4.198 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.214 0.786 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.238 0.762 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.747 1.965 9.215 20.093 hybrid contribution -1.362 0.690 -1.151 1.912 sum 16.385 2.655 8.063 18.454 Atomic orbital electron populations 1.20437 0.86699 1.03467 1.03607 1.20312 0.98449 0.86063 1.02110 1.66187 1.05012 1.31742 1.15020 1.28243 0.95263 0.99895 1.04978 1.83995 1.07590 1.03826 1.68365 1.25767 0.94641 1.00863 1.11939 1.19763 1.02448 0.87792 0.96338 1.21671 1.03139 0.94785 0.98252 1.20346 0.77813 0.87522 0.84065 1.90681 1.52670 1.67740 1.31220 1.45938 1.65331 1.15965 1.08504 1.21249 0.93783 0.80247 1.00264 0.89617 1.21095 0.90980 0.93669 0.92896 1.42349 1.38268 1.30968 1.25980 1.19202 1.10459 1.09063 0.98603 0.91229 1.24727 0.99657 0.97824 0.98498 1.69658 1.36342 1.16547 1.35327 0.86213 0.80821 0.76742 0.82529 1.21727 1.21787 1.20790 1.20894 0.95623 0.95318 0.95937 1.21877 0.99359 1.00661 0.96662 1.21887 1.00658 0.94933 1.02398 1.21909 0.98615 1.01205 0.98097 0.90082 0.90262 0.90730 0.78622 0.89901 0.88594 0.88219 0.89242 0.76210 0.95448 0.94833 0.78063 0.93506 0.92011 0.94118 0.92969 0.91921 0.92953 0.92584 0.92927 0.93273 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.06 36.01 0.36 -0.57 16 2 C 0.06 0.76 6.74 -84.22 -0.57 0.19 16 3 N -0.47 -5.81 10.53 -11.90 -0.13 -5.94 16 4 C 0.01 0.14 12.23 51.58 0.63 0.77 16 5 S 0.11 1.00 23.22 -107.50 -2.50 -1.50 16 6 C -0.21 -2.37 5.84 -35.92 -0.21 -2.58 16 7 C -0.02 -0.26 4.72 -27.88 -0.13 -0.40 16 8 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16 9 C 0.52 7.56 6.19 -10.99 -0.07 7.49 16 10 O -0.54 -9.31 13.10 5.56 0.07 -9.24 16 11 N -0.71 -10.52 3.64 -53.81 -0.20 -10.72 16 12 C 0.15 2.39 1.69 -67.93 -0.11 2.28 16 13 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 14 C 0.14 2.65 5.10 -4.04 -0.02 2.63 16 15 N -0.73 -17.54 5.43 -59.91 -0.33 -17.87 16 16 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.08 -1.01 0.62 -154.51 -0.10 -1.11 16 25 C -0.13 -1.72 7.00 37.16 0.26 -1.46 16 26 C -0.14 -1.76 8.12 37.16 0.30 -1.46 16 27 C -0.14 -1.70 7.97 37.16 0.30 -1.40 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.84 6.71 -51.92 -0.35 0.49 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.08 0.94 8.10 -51.93 -0.42 0.51 16 33 H 0.10 1.16 6.71 -51.93 -0.35 0.81 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 5.81 8.60 -40.82 -0.35 5.46 16 37 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 38 H 0.03 0.65 6.71 -51.93 -0.35 0.30 16 39 H 0.39 9.88 7.33 -40.82 -0.30 9.58 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.73 5.78 -51.93 -0.30 0.43 16 44 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.62 7.60 -51.93 -0.39 0.22 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.78 6.32 -51.93 -0.33 0.46 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -31.49 398.34 -9.06 -40.55 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.94 Total: 12.88 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.24 Total: -4.46 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.08 Total: -61.17 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.49 -9.06 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677296775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.379 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds