Wall clock time and date at job start Tue Mar 31 2020 22:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47421 * 34.99793 * 12 11 9 14 14 C 1.53003 * 109.47043 * 154.99778 * 12 11 9 15 15 N 1.46502 * 109.47244 * 305.00430 * 14 12 11 16 16 C 1.36937 * 120.00024 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00312 * 359.97438 * 16 15 14 18 18 C 1.38819 * 119.99757 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99877 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 89.99863 * 20 18 16 22 22 H 1.48497 * 109.47238 * 210.00508 * 20 18 16 23 23 H 1.48502 * 109.46809 * 329.99923 * 20 18 16 24 24 C 1.52999 * 109.47389 * 274.99341 * 12 11 9 25 25 C 1.52999 * 109.46785 * 60.00554 * 24 12 11 26 26 C 1.53000 * 109.47232 * 179.97438 * 24 12 11 27 27 C 1.52999 * 109.47403 * 300.00576 * 24 12 11 28 28 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 29 29 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 30 30 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 31 31 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 33 33 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 34 34 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 35 35 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 36 36 H 0.96996 * 120.00024 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47308 * 64.99748 * 14 12 11 38 38 H 1.08995 * 109.47602 * 184.99589 * 14 12 11 39 39 H 0.96998 * 119.99670 * 359.97438 * 15 14 12 40 40 H 0.96998 * 119.99643 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47561 * 60.00068 * 25 24 12 42 42 H 1.09001 * 109.47643 * 179.97438 * 25 24 12 43 43 H 1.09007 * 109.47095 * 299.99995 * 25 24 12 44 44 H 1.08997 * 109.46927 * 60.00970 * 26 24 12 45 45 H 1.09000 * 109.46954 * 180.02562 * 26 24 12 46 46 H 1.08998 * 109.47527 * 300.00421 * 26 24 12 47 47 H 1.09007 * 109.47017 * 59.99674 * 27 24 12 48 48 H 1.09000 * 109.47286 * 179.97438 * 27 24 12 49 49 H 1.09000 * 109.47048 * 299.99808 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3811 11 7 0.7219 -5.0452 -2.5985 12 6 0.1930 -6.4113 -2.5965 13 1 -0.4910 -6.5349 -1.7569 14 6 -0.5548 -6.6706 -3.9059 15 7 -1.5850 -5.6455 -4.0912 16 6 -2.3867 -5.6732 -5.2010 17 1 -2.2594 -6.4504 -5.9399 18 6 -3.3631 -4.7022 -5.3763 19 7 -3.5186 -3.7552 -4.4755 20 14 -4.4563 -4.7395 -6.8905 21 1 -5.6667 -5.5518 -6.6072 22 1 -4.8606 -3.3549 -7.2434 23 1 -3.7104 -5.3416 -8.0247 24 6 1.3484 -7.4055 -2.4637 25 6 2.0961 -7.1463 -1.1543 26 6 0.7958 -8.8322 -2.4610 27 6 2.3085 -7.2320 -3.6423 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.2059 1.8027 0.0057 32 1 2.3811 -3.1881 0.5260 33 1 0.7217 -2.5441 0.5181 34 1 0.8092 -2.3490 -1.9522 35 1 2.4686 -2.9931 -1.9444 36 1 0.9002 -4.5953 -3.4391 37 1 0.1475 -6.6344 -4.7388 38 1 -1.0234 -7.6539 -3.8683 39 1 -1.6996 -4.9476 -3.4274 40 1 -4.2006 -3.0765 -4.5982 41 1 1.4121 -7.2699 -0.3146 42 1 2.9190 -7.8548 -1.0594 43 1 2.4897 -6.1298 -1.1557 44 1 0.2629 -9.0172 -3.3937 45 1 1.6189 -9.5404 -2.3660 46 1 0.1121 -8.9555 -1.6212 47 1 2.7021 -6.2154 -3.6436 48 1 3.1318 -7.9399 -3.5474 49 1 1.7758 -7.4166 -4.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677296775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:10 Heat of formation + Delta-G solvation = -21.616054 kcal Electronic energy + Delta-G solvation = -27958.996261 eV Core-core repulsion = 24239.735098 eV Total energy + Delta-G solvation = -3719.261163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36499 -40.81156 -38.76636 -36.18062 -35.30108 -34.52711 -32.96691 -31.93465 -29.53735 -28.66222 -28.12755 -27.64954 -26.06086 -25.52781 -24.28529 -22.96693 -21.32250 -19.85616 -19.77051 -19.08150 -19.05257 -17.93325 -17.16295 -17.04265 -16.52761 -16.35623 -15.85275 -15.64753 -15.39661 -14.96286 -14.83574 -14.79572 -14.49114 -14.25750 -14.04122 -13.88289 -13.52532 -13.42809 -13.32906 -13.09337 -13.02178 -12.95735 -12.91719 -12.73323 -12.50696 -12.43843 -12.32160 -12.14703 -11.99835 -11.80265 -11.73053 -11.59619 -11.26178 -10.95559 -10.76162 -10.59422 -10.17600 -9.81276 -9.64793 -8.96864 -7.92739 -5.21314 -0.24614 0.43791 0.79655 1.48859 1.49807 1.57946 1.76274 1.79252 2.34556 2.57183 3.34105 3.41693 3.64910 3.71099 3.88297 3.94699 4.02188 4.08166 4.22118 4.27175 4.31350 4.37723 4.38869 4.49971 4.61340 4.68183 4.69270 4.74309 4.85508 4.86813 4.91551 4.93978 4.99022 5.04257 5.07221 5.09462 5.11401 5.19588 5.27326 5.34143 5.36208 5.48236 5.52775 5.59235 5.70981 6.28348 6.67726 6.77322 7.35918 7.37222 8.10177 8.34027 9.30134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.003396 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.025636 B = 8243.733287 C =10740.043440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.046 3.954 3 N -0.501 5.501 4 C 0.017 3.983 5 S 0.155 5.845 6 C -0.229 4.229 7 C -0.015 4.015 8 C -0.128 4.128 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.706 5.706 12 C 0.160 3.840 13 H 0.054 0.946 14 C 0.144 3.856 15 N -0.742 5.742 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.292 1.292 22 H -0.297 1.297 23 H -0.268 1.268 24 C -0.070 4.070 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.407 0.593 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.605 1.843 7.747 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 N -0.216 5.216 4 C -0.280 4.280 5 S 0.409 5.591 6 C -0.350 4.350 7 C -0.055 4.055 8 C -0.168 4.168 9 C 0.302 3.698 10 O -0.451 6.451 11 N -0.356 5.356 12 C 0.054 3.946 13 H 0.072 0.928 14 C 0.018 3.982 15 N -0.385 5.385 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.263 4.263 19 N -0.616 5.616 20 Si 0.798 3.202 21 H -0.219 1.219 22 H -0.224 1.224 23 H -0.193 1.193 24 C -0.072 4.072 25 C -0.177 4.177 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.242 0.758 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.158 1.408 8.319 21.852 hybrid contribution -2.013 0.806 -0.833 2.323 sum 18.145 2.214 7.486 19.753 Atomic orbital electron populations 1.20411 0.87016 1.03579 1.03165 1.20424 0.98736 0.86617 1.02704 1.66220 1.06332 1.32113 1.16906 1.28871 0.94962 1.01366 1.02790 1.83801 1.05128 1.02873 1.67258 1.25749 0.96374 1.00256 1.12578 1.19617 1.01888 0.88187 0.95827 1.21627 1.03932 0.92419 0.98861 1.20823 0.77198 0.88361 0.83414 1.90672 1.53801 1.68595 1.32078 1.45918 1.65139 1.15686 1.08877 1.21034 0.94316 0.81842 0.97375 0.92798 1.21218 0.90143 0.92110 0.94767 1.42519 1.39161 1.31776 1.25006 1.19601 1.10185 1.08515 0.99130 0.90528 1.25481 1.01482 0.98015 1.01323 1.69813 1.37158 1.17426 1.37238 0.85213 0.78961 0.76197 0.79811 1.21898 1.22420 1.19259 1.20849 0.94759 0.94801 0.96775 1.21772 0.99358 1.00876 0.95696 1.21888 1.01256 0.94832 1.01826 1.21868 0.98659 1.02023 0.96829 0.90783 0.90204 0.90572 0.75374 0.89745 0.90024 0.88642 0.86885 0.75796 0.93950 0.94887 0.79385 0.94172 0.94145 0.92072 0.93558 0.92267 0.90748 0.93503 0.92641 0.91324 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 10.06 71.24 0.72 -1.22 16 2 C 0.05 1.13 6.74 41.52 0.28 1.41 16 3 N -0.50 -12.10 10.53 -191.55 -2.02 -14.11 16 4 C 0.02 0.30 12.23 130.65 1.60 1.89 16 5 S 0.16 2.51 23.22 -56.49 -1.31 1.20 16 6 C -0.23 -4.96 5.84 24.64 0.14 -4.82 16 7 C -0.02 -0.34 4.72 29.85 0.14 -0.20 16 8 C -0.13 -2.94 5.68 29.85 0.17 -2.77 16 9 C 0.51 15.14 6.19 87.66 0.54 15.68 16 10 O -0.57 -19.97 13.10 -3.02 -0.04 -20.01 16 11 N -0.71 -20.95 3.64 -442.55 -1.61 -22.57 16 12 C 0.16 5.12 1.69 44.99 0.08 5.20 16 13 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 14 C 0.14 5.34 5.10 86.38 0.44 5.78 16 15 N -0.74 -35.85 5.43 -343.44 -1.87 -37.72 16 16 C -0.24 -13.02 9.99 84.04 0.84 -12.18 16 17 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.97 -57.84 13.06 21.65 0.28 -57.56 16 20 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 C -0.07 -1.77 0.62 -52.18 -0.03 -1.80 16 25 C -0.12 -3.05 7.00 71.98 0.50 -2.55 16 26 C -0.14 -3.29 8.12 71.98 0.58 -2.71 16 27 C -0.14 -2.94 7.97 71.98 0.57 -2.36 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.80 6.71 -2.38 -0.02 1.78 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.08 2.06 6.71 -2.39 -0.02 2.04 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.41 11.52 8.60 -92.71 -0.80 10.72 16 37 H 0.04 1.49 6.17 -2.38 -0.01 1.47 16 38 H 0.03 1.25 6.71 -2.39 -0.02 1.24 16 39 H 0.37 19.63 7.33 -92.71 -0.68 18.95 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.04 1.20 7.53 -2.38 -0.02 1.18 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.23 5.78 -2.38 -0.01 1.21 16 44 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.05 1.16 7.60 -2.38 -0.02 1.15 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.30 6.32 -2.39 -0.02 1.29 16 Total: -1.00 -67.89 398.34 2.00 -65.89 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.51 Total: 41.75 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 7.04 Total: -4.12 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -5.21 Total: -131.96 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.04 Total: -20.01 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.31 Total: 1.20 kcal Total: -67.89 2.00 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677296775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.278 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds