Wall clock time and date at job start Tue Mar 31 2020 23:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99798 * 2 1 4 4 H 1.08000 * 119.99744 * 202.34586 * 3 2 1 5 5 C 1.38813 * 120.00127 * 22.34384 * 3 2 1 6 6 N 1.31616 * 120.00114 * 11.34579 * 5 3 2 7 7 Si 1.86803 * 119.99834 * 191.34972 * 5 3 2 8 8 H 1.48497 * 109.47294 * 59.99948 * 7 5 3 9 9 H 1.48503 * 109.46576 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46752 * 299.99587 * 7 5 3 11 11 C 1.46499 * 120.00174 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47199 * 269.99921 * 11 2 1 13 13 C 1.52999 * 109.47163 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99963 * 180.02562 * 14 13 12 16 16 O 1.21275 * 119.99797 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00048 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47440 * 179.97438 * 17 15 14 19 19 C 1.33644 * 122.74654 * 85.01840 * 18 17 15 20 20 S 1.76199 * 107.92234 * 179.76285 * 19 18 17 21 21 C 1.70976 * 90.28387 * 0.28700 * 20 19 18 22 22 C 1.50703 * 124.92073 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47038 * 239.69885 * 22 21 20 24 24 C 1.52993 * 109.47229 * 119.69261 * 22 21 20 25 25 C 1.53007 * 109.46574 * 359.69389 * 22 21 20 26 26 N 1.29027 * 110.16845 * 359.71012 * 21 20 19 27 27 H 1.09001 * 109.47150 * 274.21027 * 1 2 3 28 28 H 1.08998 * 109.47090 * 34.21194 * 1 2 3 29 29 H 1.09004 * 109.46794 * 154.21421 * 1 2 3 30 30 H 0.96997 * 120.00302 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46888 * 150.00493 * 11 2 1 32 32 H 1.08988 * 109.47095 * 30.00083 * 11 2 1 33 33 H 1.09006 * 109.46477 * 60.00109 * 12 11 2 34 34 H 1.09003 * 109.47176 * 300.00547 * 12 11 2 35 35 H 1.09004 * 109.46778 * 60.00099 * 13 12 11 36 36 H 1.09002 * 109.47074 * 300.00275 * 13 12 11 37 37 H 0.97004 * 120.00226 * 0.02562 * 14 13 12 38 38 H 1.09009 * 109.47168 * 59.99676 * 17 15 14 39 39 H 1.08996 * 109.47258 * 300.00465 * 17 15 14 40 40 H 1.07994 * 126.03734 * 359.97438 * 19 18 17 41 41 H 1.08999 * 109.46764 * 299.99273 * 23 22 21 42 42 H 1.09004 * 109.46716 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47495 * 59.99465 * 23 22 21 44 44 H 1.09004 * 109.47143 * 180.02562 * 24 22 21 45 45 H 1.08998 * 109.47534 * 300.00174 * 24 22 21 46 46 H 1.08999 * 109.47332 * 60.00262 * 24 22 21 47 47 H 1.08998 * 109.47177 * 300.00056 * 25 22 21 48 48 H 1.08998 * 109.47152 * 60.00461 * 25 22 21 49 49 H 1.08999 * 109.46504 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2692 1.0935 7 14 2.3366 4.0049 0.1685 8 1 2.4914 4.2332 -1.2906 9 1 1.4842 5.0736 0.7487 10 1 3.6718 4.0288 0.8178 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2170 -3.0351 1.4439 14 7 3.4607 -3.4576 2.8253 15 6 4.1232 -4.6051 3.0721 16 8 4.5172 -5.2880 2.1506 17 6 4.3733 -5.0401 4.4930 18 6 5.1264 -6.3454 4.4937 19 6 6.4577 -6.4120 4.3969 20 16 6.9204 -8.1115 4.4435 21 6 5.2772 -8.5639 4.5799 22 6 4.7784 -9.9825 4.6803 23 6 3.8375 -10.2763 3.5102 24 6 4.0251 -10.1660 5.9992 25 6 5.9667 -10.9453 4.6334 26 7 4.5263 -7.5147 4.5899 27 1 -0.3633 0.0754 1.0249 28 1 -0.3633 0.8498 -0.5778 29 1 -0.3633 -0.9254 -0.4471 30 1 -0.0465 3.0777 1.4125 31 1 3.1499 -1.1385 -0.5133 32 1 1.6085 -2.0285 -0.5129 33 1 1.5000 -1.8399 1.9571 34 1 3.0415 -0.9498 1.9569 35 1 4.1694 -2.9053 0.9298 36 1 2.6276 -3.7947 0.9305 37 1 3.1452 -2.9116 3.5624 38 1 3.4204 -5.1705 5.0062 39 1 4.9618 -4.2804 5.0073 40 1 7.1311 -5.5723 4.3095 41 1 2.9911 -9.5904 3.5437 42 1 3.4772 -11.3025 3.5827 43 1 4.3743 -10.1455 2.5706 44 1 3.6647 -11.1922 6.0720 45 1 4.6954 -9.9567 6.8328 46 1 3.1786 -9.4801 6.0326 47 1 6.5034 -10.8145 3.6938 48 1 6.6370 -10.7360 5.4670 49 1 5.6060 -11.9713 4.7065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689864121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:32 Heat of formation + Delta-G solvation = 8.728570 kcal Electronic energy + Delta-G solvation = -26288.283534 eV Core-core repulsion = 22570.338213 eV Total energy + Delta-G solvation = -3717.945321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52314 -39.24546 -37.10648 -36.19511 -34.68040 -32.30885 -31.63326 -29.97032 -28.24957 -27.82419 -27.59897 -25.94969 -25.49765 -24.78353 -22.03987 -21.02661 -20.42128 -19.73806 -19.51217 -17.73789 -17.01997 -16.75453 -16.11717 -15.72651 -15.42217 -15.09436 -14.73408 -14.49310 -14.27312 -14.12749 -14.03936 -13.52618 -13.35992 -13.22396 -13.03140 -12.74519 -12.63759 -12.51698 -12.28165 -12.05104 -11.80778 -11.61063 -11.48090 -11.39649 -11.29877 -11.27036 -11.05911 -10.81564 -10.72792 -10.48075 -10.10220 -9.96178 -9.82307 -9.76764 -9.74625 -9.51554 -8.90257 -8.89273 -8.54540 -6.76386 -5.72387 -3.18136 0.55616 1.18613 1.56344 2.53282 2.70331 3.36982 3.39834 3.43659 3.44996 3.70286 4.33066 4.50058 4.50742 4.52844 4.74032 4.91783 4.96772 5.08120 5.14687 5.21093 5.24362 5.29988 5.37589 5.45626 5.46584 5.51540 5.53782 5.55306 5.58404 5.68567 5.84830 5.88291 5.95021 5.96825 6.04644 6.14600 6.26163 6.45240 6.63680 6.77638 6.84063 7.01987 7.39920 7.58811 7.61325 7.73384 7.81129 8.30033 8.40706 9.24530 9.87887 10.36858 11.32724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.001727 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.522570 B =16212.398827 C =16666.673936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.121 3.879 14 N -0.726 5.726 15 C 0.514 3.486 16 O -0.538 6.538 17 C -0.070 4.070 18 C 0.092 3.908 19 C -0.249 4.249 20 S 0.118 5.882 21 C 0.062 3.938 22 C 0.011 3.989 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.154 4.154 26 N -0.460 5.460 27 H 0.027 0.973 28 H 0.044 0.956 29 H -0.004 1.004 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.174 0.826 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -25.672 11.738 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.003 4.003 14 N -0.377 5.377 15 C 0.299 3.701 16 O -0.415 6.415 17 C -0.113 4.113 18 C -0.040 4.040 19 C -0.388 4.388 20 S 0.374 5.626 21 C -0.217 4.217 22 C 0.007 3.993 23 C -0.193 4.193 24 C -0.192 4.192 25 C -0.212 4.212 26 N -0.173 5.173 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.192 0.808 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.316 -26.588 11.099 30.954 hybrid contribution -0.195 2.284 0.329 2.316 sum 11.121 -24.304 11.428 29.068 Atomic orbital electron populations 1.20797 0.82507 0.95573 0.99211 1.43974 1.01958 1.00685 1.85892 1.19187 0.97945 0.85471 1.35716 0.91437 1.25034 0.97728 0.98525 0.98510 1.70054 1.17853 1.27141 1.40460 0.86327 0.78465 0.83767 0.77920 1.21082 1.21647 1.20982 1.20714 0.95950 0.88232 0.92305 1.22549 0.99614 0.93959 1.02916 1.21496 1.00204 0.97068 0.81511 1.46138 1.57918 1.23645 1.10010 1.20335 0.78068 0.80962 0.90754 1.90707 1.50856 1.53684 1.46250 1.20210 1.02410 0.92815 0.95855 1.19413 0.89989 0.92920 1.01678 1.26765 0.99346 1.00229 1.12444 1.83819 1.10998 0.99747 1.68014 1.26983 0.92651 0.98806 1.03220 1.19232 0.96282 0.85775 0.98026 1.21839 0.99193 1.01915 0.96375 1.21833 1.00437 1.02300 0.94630 1.22026 0.96951 0.99509 1.02674 1.65880 1.38322 0.97339 1.15809 0.95445 0.93706 0.98523 0.93735 0.93669 0.94300 0.92157 0.91298 0.91883 0.92053 0.76448 0.87057 0.87196 0.80816 0.91360 0.91667 0.92405 0.91641 0.92567 0.91391 0.91780 0.91869 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.84 0.54 4.60 16 2 N -0.60 -15.15 2.93 -181.12 -0.53 -15.68 16 3 C -0.25 -6.94 9.67 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.39 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.38 10.59 55.49 0.59 -25.79 16 7 Si 0.91 21.79 29.57 -169.99 -5.03 16.77 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.14 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 14 N -0.73 -9.56 5.56 -60.30 -0.33 -9.90 16 15 C 0.51 7.18 7.82 -10.99 -0.09 7.09 16 16 O -0.54 -9.74 16.03 5.56 0.09 -9.65 16 17 C -0.07 -0.73 6.11 -29.04 -0.18 -0.91 16 18 C 0.09 1.12 5.23 -84.22 -0.44 0.68 16 19 C -0.25 -2.70 11.14 29.12 0.32 -2.38 16 20 S 0.12 1.10 21.57 -107.50 -2.32 -1.21 16 21 C 0.06 0.66 5.78 -13.45 -0.08 0.58 16 22 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 23 C -0.13 -1.11 8.45 37.15 0.31 -0.79 16 24 C -0.13 -0.93 8.45 37.15 0.31 -0.61 16 25 C -0.15 -0.90 7.54 37.16 0.28 -0.62 16 26 N -0.46 -5.83 10.51 -8.05 -0.08 -5.91 16 27 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 28 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 29 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 0.90 8.03 -51.93 -0.42 0.48 16 32 H 0.04 0.73 7.86 -51.94 -0.41 0.32 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.35 8.47 -40.82 -0.35 4.01 16 38 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.39 7.93 -51.93 -0.41 -0.03 16 48 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 413.16 15.07 6.23 6.23 Total: -1.00 -33.68 413.16 -9.61 -43.30 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.63 Total: -0.72 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 0.40 Total: 2.57 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.36 Total: -57.28 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.32 Total: -1.21 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.68 -9.61 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689864121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.025 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds