Wall clock time and date at job start Tue Mar 31 2020 23:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99798 * 2 1 4 4 H 1.08000 * 119.99744 * 202.34586 * 3 2 1 5 5 C 1.38813 * 120.00127 * 22.34384 * 3 2 1 6 6 N 1.31616 * 120.00114 * 11.34579 * 5 3 2 7 7 Si 1.86803 * 119.99834 * 191.34972 * 5 3 2 8 8 H 1.48497 * 109.47294 * 59.99948 * 7 5 3 9 9 H 1.48503 * 109.46576 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46752 * 299.99587 * 7 5 3 11 11 C 1.46499 * 120.00174 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47199 * 269.99921 * 11 2 1 13 13 C 1.52999 * 109.47163 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.47048 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99963 * 180.02562 * 14 13 12 16 16 O 1.21275 * 119.99797 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00048 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47440 * 179.97438 * 17 15 14 19 19 C 1.33644 * 122.74654 * 85.01840 * 18 17 15 20 20 S 1.76199 * 107.92234 * 179.76285 * 19 18 17 21 21 C 1.70976 * 90.28387 * 0.28700 * 20 19 18 22 22 C 1.50703 * 124.92073 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47038 * 239.69885 * 22 21 20 24 24 C 1.52993 * 109.47229 * 119.69261 * 22 21 20 25 25 C 1.53007 * 109.46574 * 359.69389 * 22 21 20 26 26 N 1.29027 * 110.16845 * 359.71012 * 21 20 19 27 27 H 1.09001 * 109.47150 * 274.21027 * 1 2 3 28 28 H 1.08998 * 109.47090 * 34.21194 * 1 2 3 29 29 H 1.09004 * 109.46794 * 154.21421 * 1 2 3 30 30 H 0.96997 * 120.00302 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46888 * 150.00493 * 11 2 1 32 32 H 1.08988 * 109.47095 * 30.00083 * 11 2 1 33 33 H 1.09006 * 109.46477 * 60.00109 * 12 11 2 34 34 H 1.09003 * 109.47176 * 300.00547 * 12 11 2 35 35 H 1.09004 * 109.46778 * 60.00099 * 13 12 11 36 36 H 1.09002 * 109.47074 * 300.00275 * 13 12 11 37 37 H 0.97004 * 120.00226 * 0.02562 * 14 13 12 38 38 H 1.09009 * 109.47168 * 59.99676 * 17 15 14 39 39 H 1.08996 * 109.47258 * 300.00465 * 17 15 14 40 40 H 1.07994 * 126.03734 * 359.97438 * 19 18 17 41 41 H 1.08999 * 109.46764 * 299.99273 * 23 22 21 42 42 H 1.09004 * 109.46716 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47495 * 59.99465 * 23 22 21 44 44 H 1.09004 * 109.47143 * 180.02562 * 24 22 21 45 45 H 1.08998 * 109.47534 * 300.00174 * 24 22 21 46 46 H 1.08999 * 109.47332 * 60.00262 * 24 22 21 47 47 H 1.08998 * 109.47177 * 300.00056 * 25 22 21 48 48 H 1.08998 * 109.47152 * 60.00461 * 25 22 21 49 49 H 1.08999 * 109.46504 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2692 1.0935 7 14 2.3366 4.0049 0.1685 8 1 2.4914 4.2332 -1.2906 9 1 1.4842 5.0736 0.7487 10 1 3.6718 4.0288 0.8178 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2170 -3.0351 1.4439 14 7 3.4607 -3.4576 2.8253 15 6 4.1232 -4.6051 3.0721 16 8 4.5172 -5.2880 2.1506 17 6 4.3733 -5.0401 4.4930 18 6 5.1264 -6.3454 4.4937 19 6 6.4577 -6.4120 4.3969 20 16 6.9204 -8.1115 4.4435 21 6 5.2772 -8.5639 4.5799 22 6 4.7784 -9.9825 4.6803 23 6 3.8375 -10.2763 3.5102 24 6 4.0251 -10.1660 5.9992 25 6 5.9667 -10.9453 4.6334 26 7 4.5263 -7.5147 4.5899 27 1 -0.3633 0.0754 1.0249 28 1 -0.3633 0.8498 -0.5778 29 1 -0.3633 -0.9254 -0.4471 30 1 -0.0465 3.0777 1.4125 31 1 3.1499 -1.1385 -0.5133 32 1 1.6085 -2.0285 -0.5129 33 1 1.5000 -1.8399 1.9571 34 1 3.0415 -0.9498 1.9569 35 1 4.1694 -2.9053 0.9298 36 1 2.6276 -3.7947 0.9305 37 1 3.1452 -2.9116 3.5624 38 1 3.4204 -5.1705 5.0062 39 1 4.9618 -4.2804 5.0073 40 1 7.1311 -5.5723 4.3095 41 1 2.9911 -9.5904 3.5437 42 1 3.4772 -11.3025 3.5827 43 1 4.3743 -10.1455 2.5706 44 1 3.6647 -11.1922 6.0720 45 1 4.6954 -9.9567 6.8328 46 1 3.1786 -9.4801 6.0326 47 1 6.5034 -10.8145 3.6938 48 1 6.6370 -10.7360 5.4670 49 1 5.6060 -11.9713 4.7065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689864121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:31 Heat of formation + Delta-G solvation = -12.305526 kcal Electronic energy + Delta-G solvation = -26289.195641 eV Core-core repulsion = 22570.338213 eV Total energy + Delta-G solvation = -3718.857428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40438 -40.28569 -38.00310 -37.67407 -36.14341 -33.82769 -32.84180 -31.54181 -29.19598 -28.32902 -28.18950 -27.93905 -26.86647 -25.81603 -23.65056 -22.21312 -21.81288 -20.73014 -20.26676 -18.76544 -18.51291 -18.08355 -17.20756 -16.83020 -16.66808 -16.41256 -15.83810 -15.69700 -15.37978 -15.09859 -14.91341 -14.85729 -14.70767 -14.50829 -14.17365 -14.09010 -13.50627 -13.25063 -13.08928 -13.02653 -12.93751 -12.78213 -12.68574 -12.62622 -12.45177 -12.42488 -12.31006 -12.22075 -12.04778 -11.98015 -11.89533 -11.86136 -11.47096 -11.04284 -10.62854 -10.55235 -10.29952 -10.09750 -9.67910 -8.79657 -7.82052 -5.30074 -0.22865 0.44488 0.78470 1.47038 1.49380 1.55750 1.61621 1.66282 2.36206 2.52346 3.00053 3.32268 3.64087 3.66587 3.85252 3.94711 3.96141 4.10814 4.12983 4.24435 4.32793 4.38162 4.48378 4.49410 4.64461 4.66829 4.73173 4.78130 4.80556 4.83019 4.87651 4.90277 4.95310 4.96231 4.99454 5.10991 5.26351 5.29899 5.32414 5.34525 5.40071 5.40900 5.49304 5.64703 5.73423 6.34117 6.54613 6.80816 7.16257 7.22676 7.88242 8.31843 9.21437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.001727 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.522570 B =16212.398827 C =16666.673936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.620 5.620 3 C -0.262 4.262 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.275 1.275 11 C 0.150 3.850 12 C -0.128 4.128 13 C 0.135 3.865 14 N -0.718 5.718 15 C 0.515 3.485 16 O -0.582 6.582 17 C -0.063 4.063 18 C 0.068 3.932 19 C -0.263 4.263 20 S 0.151 5.849 21 C 0.050 3.950 22 C 0.006 3.994 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.151 4.151 26 N -0.490 5.490 27 H 0.005 0.995 28 H 0.017 0.983 29 H 0.028 0.972 30 H 0.248 0.752 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.189 0.811 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.131 -26.974 12.491 32.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.343 5.343 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.023 3.977 12 C -0.168 4.168 13 C 0.010 3.990 14 N -0.370 5.370 15 C 0.302 3.698 16 O -0.462 6.462 17 C -0.105 4.105 18 C -0.064 4.064 19 C -0.402 4.402 20 S 0.408 5.592 21 C -0.229 4.229 22 C 0.003 3.997 23 C -0.190 4.190 24 C -0.187 4.187 25 C -0.209 4.209 26 N -0.205 5.205 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.251 0.749 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.206 0.794 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.711 -27.908 11.871 32.884 hybrid contribution -0.595 2.586 0.052 2.654 sum 12.115 -25.322 11.923 30.499 Atomic orbital electron populations 1.20556 0.82744 0.95899 0.97622 1.44204 1.02198 1.01757 1.86160 1.19507 0.98127 0.86635 1.34961 0.91170 1.25782 0.98479 1.01792 0.98839 1.70218 1.19167 1.27487 1.41690 0.85328 0.77708 0.79557 0.77765 1.20666 1.22086 1.20039 1.20889 0.95944 0.86814 0.94013 1.22184 0.99341 0.94619 1.00699 1.21173 0.99485 0.95535 0.82800 1.46011 1.57672 1.23807 1.09556 1.20906 0.76897 0.80204 0.91810 1.90686 1.52685 1.54956 1.47914 1.20253 1.03599 0.93150 0.93483 1.19703 0.90701 0.93375 1.02581 1.27092 0.99458 1.01685 1.12006 1.83614 1.09859 0.98592 1.67118 1.27538 0.93368 0.99561 1.02408 1.19420 0.97162 0.84932 0.98232 1.21814 0.98355 1.02754 0.96095 1.21798 0.99696 1.03091 0.94138 1.22031 0.96105 0.99992 1.02747 1.65915 1.39436 0.98022 1.17089 0.97671 0.96460 0.95349 0.94312 0.93300 0.92482 0.92691 0.92840 0.92290 0.92314 0.74916 0.85827 0.83975 0.79395 0.93624 0.89270 0.93506 0.89536 0.92287 0.93222 0.92106 0.91262 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 9.01 127.77 1.15 9.93 16 2 N -0.62 -30.98 2.93 -726.94 -2.13 -33.10 16 3 C -0.26 -14.30 9.67 84.03 0.81 -13.49 16 4 H 0.07 3.71 7.84 -2.91 -0.02 3.69 16 5 C -0.05 -3.01 5.13 84.86 0.44 -2.58 16 6 N -0.94 -55.19 10.59 21.65 0.23 -54.96 16 7 Si 0.97 44.85 29.57 68.60 2.03 46.88 16 8 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 C 0.15 5.92 5.71 86.38 0.49 6.41 16 12 C -0.13 -4.40 5.65 30.60 0.17 -4.22 16 13 C 0.13 3.98 5.67 86.38 0.49 4.47 16 14 N -0.72 -18.04 5.56 -463.07 -2.57 -20.61 16 15 C 0.51 13.90 7.82 87.65 0.69 14.58 16 16 O -0.58 -20.97 16.03 -3.02 -0.05 -21.02 16 17 C -0.06 -1.23 6.11 29.10 0.18 -1.05 16 18 C 0.07 1.61 5.23 41.52 0.22 1.83 16 19 C -0.26 -5.45 11.14 66.78 0.74 -4.71 16 20 S 0.15 2.67 21.57 -56.49 -1.22 1.45 16 21 C 0.05 1.02 5.78 88.52 0.51 1.53 16 22 C 0.01 0.09 0.99 -52.93 -0.05 0.04 16 23 C -0.13 -2.09 8.45 71.98 0.61 -1.48 16 24 C -0.13 -1.63 8.45 71.98 0.61 -1.02 16 25 C -0.15 -1.45 7.54 71.98 0.54 -0.91 16 26 N -0.49 -12.33 10.51 -179.40 -1.89 -14.21 16 27 H 0.00 0.27 7.42 -2.39 -0.02 0.25 16 28 H 0.02 0.91 7.19 -2.39 -0.02 0.90 16 29 H 0.03 1.20 7.84 -2.39 -0.02 1.18 16 30 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 32 H 0.06 2.04 7.86 -2.39 -0.02 2.02 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 8.32 8.47 -92.71 -0.79 7.53 16 38 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.63 7.93 -2.39 -0.02 0.61 16 48 H 0.07 0.59 7.92 -2.39 -0.02 0.57 16 49 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -73.11 413.16 2.14 -70.97 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.14 Total: 15.26 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 7.60 Total: 9.34 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -6.36 Total: -122.88 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.22 Total: 1.45 kcal Total: -73.11 2.14 -70.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689864121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.661 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds