Wall clock time and date at job start Tue Mar 31 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47445 * 110.99993 * 69.87046 * 13 12 10 15 15 C 1.54316 * 107.22955 * 123.25758 * 14 13 12 16 16 C 1.55136 * 103.02142 * 22.28484 * 15 14 13 17 17 H 1.09000 * 110.99372 * 82.43738 * 16 15 14 18 18 N 1.46501 * 110.99408 * 206.25821 * 16 15 14 19 19 C 1.34778 * 119.99461 * 273.54577 * 18 16 15 20 20 O 1.21604 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.47303 * 119.99996 * 179.97438 * 19 18 16 22 22 F 1.35095 * 119.99761 * 0.02562 * 21 19 18 23 23 C 1.33118 * 119.99949 * 179.97438 * 21 19 18 24 24 C 1.51441 * 126.34375 * 359.69161 * 23 21 19 25 25 C 1.54274 * 106.85580 * 180.24074 * 24 23 21 26 26 C 1.54985 * 103.65757 * 23.48402 * 25 24 23 27 27 C 1.51841 * 126.33667 * 180.02562 * 23 21 19 28 28 C 1.47838 * 110.99656 * 190.71612 * 13 12 10 29 29 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 32 32 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 33 33 H 1.08996 * 109.88647 * 242.66232 * 14 13 12 34 34 H 1.09003 * 109.88869 * 3.69167 * 14 13 12 35 35 H 1.09003 * 110.70586 * 140.66565 * 15 14 13 36 36 H 1.08996 * 110.70638 * 263.72470 * 15 14 13 37 37 H 0.96997 * 120.00976 * 93.54107 * 18 16 15 38 38 H 1.09003 * 109.98309 * 299.72979 * 24 23 21 39 39 H 1.09005 * 109.98578 * 61.02379 * 24 23 21 40 40 H 1.09001 * 110.79289 * 264.86127 * 25 24 23 41 41 H 1.09002 * 110.55974 * 141.99202 * 25 24 23 42 42 H 1.08998 * 110.83349 * 204.49414 * 26 25 24 43 43 H 1.09001 * 111.00820 * 80.98958 * 26 25 24 44 44 H 1.09002 * 110.44322 * 274.92484 * 27 23 21 45 45 H 1.09001 * 110.44606 * 37.45192 * 27 23 21 46 46 H 1.09002 * 110.37778 * 332.46412 * 28 13 12 47 47 H 1.09004 * 110.37691 * 94.80969 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9009 -6.0789 1.2837 15 6 2.6537 -7.5007 1.8301 16 6 2.3009 -8.3092 0.5540 17 1 3.2030 -8.6221 0.0281 18 7 1.4589 -9.4631 0.8796 19 6 2.0264 -10.6283 1.2494 20 8 3.2372 -10.7220 1.3123 21 6 1.1799 -11.7883 1.5774 22 9 -0.1652 -11.6844 1.5070 23 6 1.7404 -12.9393 1.9422 24 6 3.2244 -13.2169 2.0612 25 6 3.3702 -14.6865 2.5073 26 6 2.0438 -15.3423 2.0463 27 6 1.0103 -14.2191 2.3092 28 6 1.5122 -7.2623 -0.2716 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6165 -4.9246 0.8846 32 1 0.6178 -4.9168 -0.8953 33 1 3.9691 -5.9180 1.1385 34 1 2.5055 -5.3380 1.9786 35 1 3.5548 -7.8954 2.2995 36 1 1.8213 -7.5038 2.5339 37 1 0.4932 -9.3885 0.8292 38 1 3.7097 -13.0684 1.0965 39 1 3.6682 -12.5575 2.8071 40 1 3.4745 -14.7536 3.5903 41 1 4.2211 -15.1543 2.0120 42 1 1.8186 -16.2244 2.6456 43 1 2.0803 -15.5947 0.9865 44 1 0.7227 -14.2052 3.3605 45 1 0.1336 -14.3524 1.6754 46 1 0.4768 -7.2148 0.0657 47 1 1.5556 -7.5054 -1.3333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690087532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:32 Heat of formation + Delta-G solvation = -102.888671 kcal Electronic energy + Delta-G solvation = -28759.077859 eV Core-core repulsion = 24470.079275 eV Total energy + Delta-G solvation = -4288.998584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20288 -40.32529 -39.11924 -38.24552 -37.43209 -34.61693 -33.80373 -31.85407 -31.31728 -30.78725 -29.29128 -28.69831 -26.80440 -25.58418 -24.16340 -22.19393 -21.30479 -21.18138 -20.75598 -19.34946 -19.06415 -18.15659 -17.84411 -16.89438 -16.55875 -16.32721 -15.99681 -15.75654 -15.49073 -15.13554 -14.65353 -14.49973 -14.21206 -13.92902 -13.83945 -13.77691 -13.41321 -13.34052 -13.08818 -12.91274 -12.66732 -12.31765 -11.96912 -11.91297 -11.69475 -11.61700 -11.59615 -11.49234 -11.41802 -11.23550 -11.08070 -11.01505 -10.62738 -10.38335 -10.21334 -10.19387 -9.50603 -9.47034 -9.13237 -8.45862 -7.96230 -7.91967 -6.40192 -3.80869 0.75542 2.61934 2.72676 3.19069 3.27513 3.33451 3.73422 3.84925 3.92701 4.11179 4.16271 4.29155 4.45445 4.53558 4.62271 4.67365 4.79306 4.94575 5.01683 5.08008 5.14677 5.26007 5.26693 5.27936 5.37574 5.38661 5.48020 5.54109 5.57226 5.63343 5.71452 5.73018 5.77806 5.85255 5.88712 5.94473 5.99711 6.06474 6.21622 6.30125 6.46246 7.10952 7.18807 7.21799 7.56746 7.77020 8.07886 8.63686 9.20044 9.56228 10.08345 10.77674 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.001712 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.378224 B =16350.775311 C =16783.163019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.501 5.501 14 C 0.058 3.942 15 C -0.154 4.154 16 C 0.137 3.863 17 H 0.108 0.892 18 N -0.712 5.712 19 C 0.552 3.448 20 O -0.517 6.517 21 C -0.014 4.014 22 F -0.137 7.137 23 C -0.071 4.071 24 C -0.081 4.081 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.097 4.097 28 C 0.038 3.962 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -29.374 4.798 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.032 3.968 17 H 0.126 0.874 18 N -0.363 5.363 19 C 0.338 3.662 20 O -0.394 6.394 21 C -0.036 4.036 22 F -0.116 7.116 23 C -0.074 4.074 24 C -0.117 4.117 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.134 4.134 28 C -0.091 4.091 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.098 -29.119 4.434 29.455 hybrid contribution -1.824 0.934 0.592 2.134 sum -1.922 -28.185 5.026 28.694 Atomic orbital electron populations 1.69611 1.05922 1.28095 1.50834 1.25249 0.95630 0.99681 0.97415 0.85860 0.79210 0.80839 0.78390 1.20410 1.20980 1.19449 1.19698 0.93364 0.82214 1.47457 0.87926 1.41857 1.09140 1.04568 1.64774 1.19713 0.88440 0.84474 0.84470 1.90527 1.13605 1.86967 1.54749 1.22101 0.93918 0.91527 1.01544 1.63246 1.26107 1.00937 1.32246 1.22707 1.01265 0.94050 0.88953 1.23245 1.02481 0.96286 0.97343 1.22177 0.94519 0.84171 0.95890 0.87438 1.45816 1.10759 1.11052 1.68680 1.18120 0.87808 0.82444 0.77859 1.90841 1.12955 1.83244 1.52375 1.18839 0.77158 0.95329 1.12302 1.91474 1.28926 1.96518 1.94684 1.23071 0.98886 0.92939 0.92523 1.21180 0.90495 0.96406 1.03652 1.22480 0.97846 0.94929 1.01363 1.22530 0.94442 0.97216 1.01881 1.21524 0.98396 0.90997 1.02461 1.23263 0.96106 0.89019 1.00710 0.91928 0.77552 0.93234 0.89310 0.89517 0.92278 0.90178 0.91418 0.76070 0.88995 0.89122 0.91092 0.90797 0.90705 0.90905 0.89074 0.90123 0.93161 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.48 7.43 -10.98 -0.08 10.40 16 11 O -0.58 -15.61 15.12 5.55 0.08 -15.53 16 12 C 0.04 0.72 5.03 -4.97 -0.03 0.69 16 13 N -0.50 -8.23 4.85 -232.69 -1.13 -9.35 16 14 C 0.06 0.93 5.65 -2.84 -0.02 0.91 16 15 C -0.15 -1.95 6.64 -24.91 -0.17 -2.11 16 16 C 0.14 1.61 3.31 -65.79 -0.22 1.39 16 17 H 0.11 1.41 7.73 -51.93 -0.40 1.01 16 18 N -0.71 -7.18 5.23 -52.85 -0.28 -7.46 16 19 C 0.55 6.19 7.77 -12.57 -0.10 6.09 16 20 O -0.52 -6.99 13.86 5.27 0.07 -6.91 16 21 C -0.01 -0.14 7.42 -37.68 -0.28 -0.42 16 22 F -0.14 -1.29 16.52 2.25 0.04 -1.25 16 23 C -0.07 -0.60 6.16 -100.20 -0.62 -1.21 16 24 C -0.08 -0.64 4.81 -26.85 -0.13 -0.77 16 25 C -0.13 -0.71 6.88 -25.02 -0.17 -0.88 16 26 C -0.12 -0.60 6.94 -24.69 -0.17 -0.77 16 27 C -0.10 -0.58 6.44 -26.33 -0.17 -0.75 16 28 C 0.04 0.46 6.31 -2.30 -0.01 0.44 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 31 H 0.05 0.79 7.96 -51.93 -0.41 0.38 16 32 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.01 7.31 -51.93 -0.38 0.63 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.31 8.06 -40.82 -0.33 2.98 16 38 H 0.09 0.82 7.67 -51.93 -0.40 0.42 16 39 H 0.09 0.82 7.68 -51.93 -0.40 0.42 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.19 387.71 -9.32 -41.51 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.20 Total: 10.28 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -2.40 Total: 5.02 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.74 Total: -55.09 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.19 -9.32 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690087532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.375 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds