Wall clock time and date at job start Tue Mar 31 2020 22:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.47445 * 110.99993 * 69.87046 * 13 12 10 15 15 C 1.54316 * 107.22955 * 123.25758 * 14 13 12 16 16 C 1.55136 * 103.02142 * 22.28484 * 15 14 13 17 17 H 1.09000 * 110.99372 * 82.43738 * 16 15 14 18 18 N 1.46501 * 110.99408 * 206.25821 * 16 15 14 19 19 C 1.34778 * 119.99461 * 273.54577 * 18 16 15 20 20 O 1.21604 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.47303 * 119.99996 * 179.97438 * 19 18 16 22 22 F 1.35095 * 119.99761 * 0.02562 * 21 19 18 23 23 C 1.33118 * 119.99949 * 179.97438 * 21 19 18 24 24 C 1.51441 * 126.34375 * 359.69161 * 23 21 19 25 25 C 1.54274 * 106.85580 * 180.24074 * 24 23 21 26 26 C 1.54985 * 103.65757 * 23.48402 * 25 24 23 27 27 C 1.51841 * 126.33667 * 180.02562 * 23 21 19 28 28 C 1.47838 * 110.99656 * 190.71612 * 13 12 10 29 29 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 32 32 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 33 33 H 1.08996 * 109.88647 * 242.66232 * 14 13 12 34 34 H 1.09003 * 109.88869 * 3.69167 * 14 13 12 35 35 H 1.09003 * 110.70586 * 140.66565 * 15 14 13 36 36 H 1.08996 * 110.70638 * 263.72470 * 15 14 13 37 37 H 0.96997 * 120.00976 * 93.54107 * 18 16 15 38 38 H 1.09003 * 109.98309 * 299.72979 * 24 23 21 39 39 H 1.09005 * 109.98578 * 61.02379 * 24 23 21 40 40 H 1.09001 * 110.79289 * 264.86127 * 25 24 23 41 41 H 1.09002 * 110.55974 * 141.99202 * 25 24 23 42 42 H 1.08998 * 110.83349 * 204.49414 * 26 25 24 43 43 H 1.09001 * 111.00820 * 80.98958 * 26 25 24 44 44 H 1.09002 * 110.44322 * 274.92484 * 27 23 21 45 45 H 1.09001 * 110.44606 * 37.45192 * 27 23 21 46 46 H 1.09002 * 110.37778 * 332.46412 * 28 13 12 47 47 H 1.09004 * 110.37691 * 94.80969 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 2.9009 -6.0789 1.2837 15 6 2.6537 -7.5007 1.8301 16 6 2.3009 -8.3092 0.5540 17 1 3.2030 -8.6221 0.0281 18 7 1.4589 -9.4631 0.8796 19 6 2.0264 -10.6283 1.2494 20 8 3.2372 -10.7220 1.3123 21 6 1.1799 -11.7883 1.5774 22 9 -0.1652 -11.6844 1.5070 23 6 1.7404 -12.9393 1.9422 24 6 3.2244 -13.2169 2.0612 25 6 3.3702 -14.6865 2.5073 26 6 2.0438 -15.3423 2.0463 27 6 1.0103 -14.2191 2.3092 28 6 1.5122 -7.2623 -0.2716 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6165 -4.9246 0.8846 32 1 0.6178 -4.9168 -0.8953 33 1 3.9691 -5.9180 1.1385 34 1 2.5055 -5.3380 1.9786 35 1 3.5548 -7.8954 2.2995 36 1 1.8213 -7.5038 2.5339 37 1 0.4932 -9.3885 0.8292 38 1 3.7097 -13.0684 1.0965 39 1 3.6682 -12.5575 2.8071 40 1 3.4745 -14.7536 3.5903 41 1 4.2211 -15.1543 2.0120 42 1 1.8186 -16.2244 2.6456 43 1 2.0803 -15.5947 0.9865 44 1 0.7227 -14.2052 3.3605 45 1 0.1336 -14.3524 1.6754 46 1 0.4768 -7.2148 0.0657 47 1 1.5556 -7.5054 -1.3333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690087532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:31 Heat of formation + Delta-G solvation = -125.616303 kcal Electronic energy + Delta-G solvation = -28760.063403 eV Core-core repulsion = 24470.079275 eV Total energy + Delta-G solvation = -4289.984128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90351 -41.29531 -40.43403 -39.29973 -38.60775 -36.02859 -35.46192 -33.30143 -32.60362 -31.96002 -29.81976 -29.77020 -28.25475 -26.54971 -25.80241 -23.04221 -22.41448 -21.90623 -21.67970 -20.82677 -20.09403 -19.84215 -18.93527 -17.79246 -17.66028 -17.26232 -17.14913 -16.86446 -16.51529 -16.26636 -16.10070 -15.68526 -15.60725 -15.41651 -14.83007 -14.68004 -14.47687 -14.44160 -14.24814 -13.79164 -13.56637 -13.51318 -13.32194 -13.24010 -12.97928 -12.78714 -12.58189 -12.50743 -12.42878 -12.36816 -12.12121 -12.05194 -12.01528 -11.81661 -11.50204 -11.48938 -11.06570 -10.38641 -10.31290 -9.99634 -9.87024 -9.26844 -8.45899 -5.94311 0.02886 1.38098 1.41686 1.54183 1.76025 1.89015 2.07076 2.29482 2.79358 3.08011 3.20896 3.25570 3.33495 3.49911 3.67526 3.71206 3.97706 4.00011 4.12633 4.20099 4.25191 4.28255 4.30972 4.42288 4.43457 4.51696 4.61787 4.62226 4.78920 4.80042 4.87662 4.90529 4.94467 5.00552 5.03755 5.12632 5.13048 5.19888 5.30439 5.38871 5.41696 5.42072 5.83335 5.97295 6.08553 6.33526 6.62045 6.94149 7.14307 7.57854 8.14255 8.71498 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.001712 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.378224 B =16350.775311 C =16783.163019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.054 3.946 13 N -0.525 5.525 14 C 0.062 3.938 15 C -0.141 4.141 16 C 0.147 3.853 17 H 0.092 0.908 18 N -0.702 5.702 19 C 0.549 3.451 20 O -0.546 6.546 21 C -0.031 4.031 22 F -0.135 7.135 23 C -0.062 4.062 24 C -0.083 4.083 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.097 4.097 28 C 0.043 3.957 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.416 0.584 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -31.073 5.069 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.077 4.077 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.180 4.180 16 C 0.042 3.958 17 H 0.110 0.890 18 N -0.353 5.353 19 C 0.337 3.663 20 O -0.426 6.426 21 C -0.053 4.053 22 F -0.114 7.114 23 C -0.065 4.065 24 C -0.120 4.120 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.134 4.134 28 C -0.084 4.084 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.253 0.747 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.794 -30.838 4.699 31.246 hybrid contribution -1.270 1.394 0.510 1.954 sum -3.064 -29.445 5.210 30.058 Atomic orbital electron populations 1.69666 1.06745 1.29228 1.50481 1.26003 0.96544 1.02292 0.96366 0.84946 0.77851 0.77014 0.78626 1.19673 1.19500 1.19938 1.19644 0.92650 0.84075 1.49856 0.90478 1.41917 1.09286 1.04636 1.65440 1.20815 0.88325 0.85987 0.82163 1.90500 1.15808 1.87891 1.56037 1.21956 0.93470 0.88464 1.03794 1.63130 1.26949 1.02469 1.32455 1.22541 0.99590 0.95644 0.88873 1.23109 1.02873 0.94178 0.97868 1.21901 0.94320 0.84524 0.95071 0.88973 1.45657 1.11180 1.10237 1.68230 1.18397 0.87658 0.82969 0.77307 1.90831 1.14245 1.83779 1.53736 1.18619 0.77183 0.95200 1.14297 1.91474 1.28557 1.96511 1.94902 1.23432 0.99413 0.93414 0.90283 1.21201 0.90196 0.98038 1.02598 1.22482 0.98721 0.93040 1.01976 1.22547 0.93332 0.97362 1.02351 1.21648 0.98653 0.89867 1.03229 1.23292 0.97038 0.86632 1.01463 0.91338 0.76987 0.90870 0.86777 0.92322 0.93904 0.90584 0.90007 0.74653 0.90335 0.90498 0.90235 0.90075 0.88788 0.90809 0.87818 0.89550 0.90461 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.68 13.05 21.66 0.28 -49.39 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 3 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.60 5.29 -306.98 -1.62 -31.23 16 10 C 0.44 21.07 7.43 87.66 0.65 21.72 16 11 O -0.62 -34.67 15.12 -3.07 -0.05 -34.72 16 12 C 0.05 1.85 5.03 85.56 0.43 2.28 16 13 N -0.53 -16.86 4.85 -890.08 -4.32 -21.18 16 14 C 0.06 2.01 5.65 86.65 0.49 2.49 16 15 C -0.14 -3.49 6.64 31.77 0.21 -3.28 16 16 C 0.15 3.31 3.31 46.38 0.15 3.46 16 17 H 0.09 2.41 7.73 -2.39 -0.02 2.39 16 18 N -0.70 -13.11 5.23 -439.37 -2.30 -15.40 16 19 C 0.55 11.97 7.77 86.63 0.67 12.65 16 20 O -0.55 -14.92 13.86 -4.04 -0.06 -14.98 16 21 C -0.03 -0.56 7.42 23.51 0.17 -0.39 16 22 F -0.14 -2.32 16.52 44.97 0.74 -1.58 16 23 C -0.06 -0.97 6.16 -17.00 -0.10 -1.07 16 24 C -0.08 -1.29 4.81 30.52 0.15 -1.14 16 25 C -0.12 -1.16 6.88 31.71 0.22 -0.94 16 26 C -0.12 -0.85 6.94 31.91 0.22 -0.63 16 27 C -0.10 -0.94 6.44 30.85 0.20 -0.75 16 28 C 0.04 0.96 6.31 86.78 0.55 1.51 16 29 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 31 H 0.07 2.17 7.96 -2.38 -0.02 2.15 16 32 H 0.11 3.32 8.07 -2.39 -0.02 3.30 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.50 7.31 -2.39 -0.02 1.49 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.42 5.84 8.06 -92.71 -0.75 5.09 16 38 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 39 H 0.08 1.40 7.68 -2.38 -0.02 1.39 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 1.34 7.67 -2.39 -0.02 1.32 16 47 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -71.28 387.71 -0.47 -71.75 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.47 Total: 33.92 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 5.29 Total: 17.48 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -7.96 Total: -117.21 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -0.10 Total: -49.70 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.74 Total: -1.58 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.28 -0.47 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690087532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.865 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds