Wall clock time and date at job start Tue Mar 31 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 120.00794 * 2 1 4 4 H 1.48496 * 109.47119 * 270.00613 * 3 2 1 5 5 H 1.48504 * 109.46602 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.47232 * 150.00147 * 3 2 1 7 7 C 1.38963 * 119.99464 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99755 * 180.27363 * 7 2 1 10 10 C 1.34778 * 119.99746 * 179.72081 * 9 7 2 11 11 O 1.21289 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99981 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47383 * 186.14080 * 12 10 9 14 14 C 1.47905 * 111.00181 * 176.64184 * 13 12 10 15 15 C 1.53997 * 107.05499 * 214.15559 * 14 13 12 16 16 C 1.54596 * 105.14199 * 1.22219 * 15 14 13 17 17 H 1.09002 * 110.72198 * 263.42374 * 16 15 14 18 18 N 1.46495 * 110.72301 * 140.31809 * 16 15 14 19 19 C 1.34778 * 119.99879 * 86.45524 * 18 16 15 20 20 O 1.21606 * 120.00255 * 359.97438 * 19 18 16 21 21 C 1.47301 * 119.99931 * 179.97438 * 19 18 16 22 22 F 1.35108 * 119.99653 * 359.97438 * 21 19 18 23 23 C 1.33108 * 120.00331 * 179.97438 * 21 19 18 24 24 C 1.51446 * 126.33906 * 359.69110 * 23 21 19 25 25 C 1.54273 * 106.85140 * 180.23849 * 24 23 21 26 26 C 1.54985 * 103.66121 * 23.48324 * 25 24 23 27 27 C 1.51846 * 126.34581 * 179.97438 * 23 21 19 28 28 C 1.48529 * 111.00325 * 59.24077 * 13 12 10 29 29 H 0.97010 * 119.99135 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00426 * 359.72710 * 9 7 2 31 31 H 1.09005 * 109.47215 * 306.14295 * 12 10 9 32 32 H 1.09002 * 109.47456 * 66.13857 * 12 10 9 33 33 H 1.08995 * 109.91555 * 333.50396 * 14 13 12 34 34 H 1.08995 * 109.91857 * 94.80353 * 14 13 12 35 35 H 1.09001 * 110.30996 * 120.14173 * 15 14 13 36 36 H 1.09002 * 110.30565 * 242.30791 * 15 14 13 37 37 H 0.96996 * 119.99907 * 266.45309 * 18 16 15 38 38 H 1.08997 * 109.98726 * 299.72331 * 24 23 21 39 39 H 1.09006 * 109.98658 * 61.02704 * 24 23 21 40 40 H 1.08998 * 110.80033 * 264.85661 * 25 24 23 41 41 H 1.09003 * 110.43060 * 141.93040 * 25 24 23 42 42 H 1.08999 * 110.83058 * 204.48638 * 26 25 24 43 43 H 1.08996 * 111.00469 * 80.99267 * 26 25 24 44 44 H 1.08996 * 110.44223 * 274.93220 * 27 23 21 45 45 H 1.09001 * 110.43332 * 37.33212 * 27 23 21 46 46 H 1.09003 * 110.66708 * 278.16051 * 28 13 12 47 47 H 1.08996 * 110.66479 * 41.28683 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4687 -2.1388 -0.0005 9 7 3.3797 -1.2036 0.0051 10 6 4.0534 -2.3709 0.0103 11 8 3.4469 -3.4212 0.0095 12 6 5.5604 -2.3710 0.0159 13 7 6.0506 -3.7484 -0.1272 14 6 7.5271 -3.7801 -0.2064 15 6 7.9040 -4.9330 -1.1552 16 6 6.5559 -5.5245 -1.6273 17 1 6.2843 -6.3926 -1.0267 18 7 6.6136 -5.8768 -3.0480 19 6 7.0792 -7.0843 -3.4245 20 8 7.4519 -7.8811 -2.5849 21 6 7.1366 -7.4388 -4.8531 22 9 6.7220 -6.5537 -5.7859 23 6 7.5969 -8.6311 -5.2250 24 6 8.1020 -9.7244 -4.3068 25 6 8.5285 -10.9027 -5.2068 26 6 8.8184 -10.2328 -6.5740 27 6 7.7185 -9.1447 -6.6488 28 6 5.5641 -4.3578 -1.3914 29 1 -0.4849 0.8402 0.0004 30 1 3.8648 -0.3636 0.0055 31 1 5.9270 -1.7668 -0.8140 32 1 5.9204 -1.9532 0.9562 33 1 7.8980 -2.8355 -0.6042 34 1 7.9482 -3.9604 0.7827 35 1 8.4692 -4.5531 -2.0063 36 1 8.4824 -5.6877 -0.6223 37 1 6.3166 -5.2411 -3.7178 38 1 8.9553 -9.3639 -3.7325 39 1 7.3063 -10.0421 -3.6329 40 1 7.7221 -11.6301 -5.3000 41 1 9.4284 -11.3755 -4.8135 42 1 8.7101 -10.9499 -7.3877 43 1 9.8110 -9.7826 -6.5858 44 1 6.7748 -9.5790 -6.9787 45 1 8.0213 -8.3401 -7.3190 46 1 4.5484 -4.7347 -1.2709 47 1 5.6143 -3.6390 -2.2092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690087533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:34 Heat of formation + Delta-G solvation = -95.299996 kcal Electronic energy + Delta-G solvation = -29103.609430 eV Core-core repulsion = 24814.939915 eV Total energy + Delta-G solvation = -4288.669514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.10849 -40.26842 -39.18972 -38.25474 -37.51438 -34.59885 -33.93230 -31.84437 -31.68327 -30.98629 -29.23047 -28.60135 -26.93090 -25.61614 -24.02646 -22.13252 -21.35845 -21.20977 -20.41119 -19.42069 -19.26307 -18.33331 -18.02199 -16.86507 -16.54716 -16.30933 -16.08018 -15.59318 -15.34455 -15.15871 -14.88916 -14.58796 -14.32309 -13.95049 -13.76233 -13.68774 -13.59407 -13.08066 -12.94415 -12.85780 -12.58177 -12.50817 -12.38270 -11.89794 -11.84069 -11.82321 -11.58019 -11.55273 -11.40269 -11.32221 -11.03452 -11.00653 -10.73167 -10.61326 -10.11587 -9.99935 -9.58275 -9.40751 -9.05262 -8.59502 -8.23326 -8.12845 -6.33556 -3.84987 0.83652 2.72383 2.81718 3.00473 3.04380 3.13139 3.69663 3.81169 3.89840 4.07329 4.12299 4.22115 4.54625 4.58989 4.64630 4.70472 4.82594 4.86291 5.00701 5.01317 5.13585 5.18624 5.27879 5.32597 5.33626 5.42762 5.51212 5.54589 5.60508 5.66266 5.68534 5.72077 5.77927 5.81049 5.88756 5.90754 5.92647 6.01620 6.07621 6.29653 6.38572 6.99568 7.04979 7.24964 7.55414 7.86345 8.11602 8.57092 8.92477 9.39514 9.79656 10.79425 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.002060 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.049584 B =13590.340950 C =14211.001007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.450 3.550 11 O -0.560 6.560 12 C 0.035 3.965 13 N -0.489 5.489 14 C 0.034 3.966 15 C -0.139 4.139 16 C 0.141 3.859 17 H 0.107 0.893 18 N -0.712 5.712 19 C 0.552 3.448 20 O -0.519 6.519 21 C -0.012 4.012 22 F -0.137 7.137 23 C -0.073 4.073 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.097 4.097 28 C 0.035 3.965 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.405 0.595 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.260 -14.011 -12.062 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.442 6.442 12 C -0.097 4.097 13 N -0.214 5.214 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.036 3.964 17 H 0.125 0.875 18 N -0.362 5.362 19 C 0.338 3.662 20 O -0.397 6.397 21 C -0.035 4.035 22 F -0.115 7.115 23 C -0.076 4.076 24 C -0.117 4.117 25 C -0.166 4.166 26 C -0.160 4.160 27 C -0.134 4.134 28 C -0.094 4.094 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.134 0.866 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.681 -15.394 -10.997 28.029 hybrid contribution 0.583 2.688 -1.197 3.000 sum 21.264 -12.706 -12.195 27.610 Atomic orbital electron populations 1.69624 1.05640 1.27512 1.49212 1.25049 0.95501 0.97990 0.97638 0.86674 0.79816 0.84070 0.78848 1.19670 1.20136 1.19480 1.19429 0.79171 0.96635 1.48111 0.86231 1.42210 1.07567 1.06111 1.66995 1.19603 0.88007 0.84616 0.84236 1.90535 1.69345 1.30724 1.53557 1.22138 0.95653 0.89755 1.02129 1.64489 1.05450 1.17166 1.34269 1.22926 0.89088 0.97306 1.00069 1.22805 0.97612 0.98141 0.99292 1.22006 0.95111 0.99036 0.80273 0.87549 1.45883 1.64721 1.16486 1.09140 1.18121 0.78375 0.82348 0.87387 1.90825 1.48028 1.49417 1.51422 1.18864 1.09338 0.89502 0.85748 1.91484 1.88524 1.67513 1.64023 1.23048 0.92920 0.92801 0.98867 1.21171 1.02156 0.91814 0.96518 1.22482 1.01693 0.97410 0.95023 1.22527 0.98394 0.97253 0.97863 1.21522 1.00438 0.98977 0.92425 1.23564 1.00875 0.94417 0.90503 0.91590 0.79712 0.93273 0.88708 0.93679 0.89946 0.91278 0.90325 0.76005 0.89107 0.89095 0.91051 0.90867 0.90733 0.90971 0.89053 0.90173 0.86605 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 2 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 3 Si 0.88 19.17 27.74 -169.99 -4.72 14.45 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.34 6.51 56.52 0.37 -4.97 16 7 C -0.30 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 10.01 7.42 -10.98 -0.08 9.92 16 11 O -0.56 -14.59 13.87 5.55 0.08 -14.51 16 12 C 0.04 0.58 5.30 -4.98 -0.03 0.55 16 13 N -0.49 -7.70 5.11 -231.90 -1.18 -8.89 16 14 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 15 C -0.14 -1.58 6.67 -25.37 -0.17 -1.75 16 16 C 0.14 1.84 3.35 -66.07 -0.22 1.62 16 17 H 0.11 1.57 7.69 -51.93 -0.40 1.17 16 18 N -0.71 -8.36 5.14 -53.12 -0.27 -8.64 16 19 C 0.55 6.85 7.77 -12.57 -0.10 6.75 16 20 O -0.52 -7.45 13.84 5.27 0.07 -7.37 16 21 C -0.01 -0.13 7.42 -37.68 -0.28 -0.41 16 22 F -0.14 -1.48 16.52 2.25 0.04 -1.45 16 23 C -0.07 -0.68 6.16 -100.20 -0.62 -1.30 16 24 C -0.08 -0.69 4.81 -26.85 -0.13 -0.82 16 25 C -0.13 -0.78 6.87 -25.02 -0.17 -0.96 16 26 C -0.12 -0.68 6.94 -24.68 -0.17 -0.85 16 27 C -0.10 -0.67 6.45 -26.32 -0.17 -0.84 16 28 C 0.03 0.53 5.19 -1.90 -0.01 0.52 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 31 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.48 7.68 -51.93 -0.40 0.08 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 4.20 8.07 -40.82 -0.33 3.87 16 38 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 39 H 0.09 0.89 7.68 -51.93 -0.40 0.49 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.12 2.18 6.43 -51.93 -0.33 1.85 16 47 H 0.04 0.63 7.88 -51.93 -0.41 0.22 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -32.57 382.59 -9.01 -41.58 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -7.10 Total: 12.50 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.41 Total: 5.19 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.74 Total: -56.15 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.15 Total: -21.89 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.72 Total: 14.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.57 -9.01 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690087533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.719 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds