Wall clock time and date at job start Tue Mar 31 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 120.00794 * 2 1 4 4 H 1.48496 * 109.47119 * 270.00613 * 3 2 1 5 5 H 1.48504 * 109.46602 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.47232 * 150.00147 * 3 2 1 7 7 C 1.38963 * 119.99464 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99755 * 180.27363 * 7 2 1 10 10 C 1.34778 * 119.99746 * 179.72081 * 9 7 2 11 11 O 1.21289 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99981 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47383 * 186.14080 * 12 10 9 14 14 C 1.47905 * 111.00181 * 176.64184 * 13 12 10 15 15 C 1.53997 * 107.05499 * 214.15559 * 14 13 12 16 16 C 1.54596 * 105.14199 * 1.22219 * 15 14 13 17 17 H 1.09002 * 110.72198 * 263.42374 * 16 15 14 18 18 N 1.46495 * 110.72301 * 140.31809 * 16 15 14 19 19 C 1.34778 * 119.99879 * 86.45524 * 18 16 15 20 20 O 1.21606 * 120.00255 * 359.97438 * 19 18 16 21 21 C 1.47301 * 119.99931 * 179.97438 * 19 18 16 22 22 F 1.35108 * 119.99653 * 359.97438 * 21 19 18 23 23 C 1.33108 * 120.00331 * 179.97438 * 21 19 18 24 24 C 1.51446 * 126.33906 * 359.69110 * 23 21 19 25 25 C 1.54273 * 106.85140 * 180.23849 * 24 23 21 26 26 C 1.54985 * 103.66121 * 23.48324 * 25 24 23 27 27 C 1.51846 * 126.34581 * 179.97438 * 23 21 19 28 28 C 1.48529 * 111.00325 * 59.24077 * 13 12 10 29 29 H 0.97010 * 119.99135 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00426 * 359.72710 * 9 7 2 31 31 H 1.09005 * 109.47215 * 306.14295 * 12 10 9 32 32 H 1.09002 * 109.47456 * 66.13857 * 12 10 9 33 33 H 1.08995 * 109.91555 * 333.50396 * 14 13 12 34 34 H 1.08995 * 109.91857 * 94.80353 * 14 13 12 35 35 H 1.09001 * 110.30996 * 120.14173 * 15 14 13 36 36 H 1.09002 * 110.30565 * 242.30791 * 15 14 13 37 37 H 0.96996 * 119.99907 * 266.45309 * 18 16 15 38 38 H 1.08997 * 109.98726 * 299.72331 * 24 23 21 39 39 H 1.09006 * 109.98658 * 61.02704 * 24 23 21 40 40 H 1.08998 * 110.80033 * 264.85661 * 25 24 23 41 41 H 1.09003 * 110.43060 * 141.93040 * 25 24 23 42 42 H 1.08999 * 110.83058 * 204.48638 * 26 25 24 43 43 H 1.08996 * 111.00469 * 80.99267 * 26 25 24 44 44 H 1.08996 * 110.44223 * 274.93220 * 27 23 21 45 45 H 1.09001 * 110.43332 * 37.33212 * 27 23 21 46 46 H 1.09003 * 110.66708 * 278.16051 * 28 13 12 47 47 H 1.08996 * 110.66479 * 41.28683 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 1.4687 -2.1388 -0.0005 9 7 3.3797 -1.2036 0.0051 10 6 4.0534 -2.3709 0.0103 11 8 3.4469 -3.4212 0.0095 12 6 5.5604 -2.3710 0.0159 13 7 6.0506 -3.7484 -0.1272 14 6 7.5271 -3.7801 -0.2064 15 6 7.9040 -4.9330 -1.1552 16 6 6.5559 -5.5245 -1.6273 17 1 6.2843 -6.3926 -1.0267 18 7 6.6136 -5.8768 -3.0480 19 6 7.0792 -7.0843 -3.4245 20 8 7.4519 -7.8811 -2.5849 21 6 7.1366 -7.4388 -4.8531 22 9 6.7220 -6.5537 -5.7859 23 6 7.5969 -8.6311 -5.2250 24 6 8.1020 -9.7244 -4.3068 25 6 8.5285 -10.9027 -5.2068 26 6 8.8184 -10.2328 -6.5740 27 6 7.7185 -9.1447 -6.6488 28 6 5.5641 -4.3578 -1.3914 29 1 -0.4849 0.8402 0.0004 30 1 3.8648 -0.3636 0.0055 31 1 5.9270 -1.7668 -0.8140 32 1 5.9204 -1.9532 0.9562 33 1 7.8980 -2.8355 -0.6042 34 1 7.9482 -3.9604 0.7827 35 1 8.4692 -4.5531 -2.0063 36 1 8.4824 -5.6877 -0.6223 37 1 6.3166 -5.2411 -3.7178 38 1 8.9553 -9.3639 -3.7325 39 1 7.3063 -10.0421 -3.6329 40 1 7.7221 -11.6301 -5.3000 41 1 9.4284 -11.3755 -4.8135 42 1 8.7101 -10.9499 -7.3877 43 1 9.8110 -9.7826 -6.5858 44 1 6.7748 -9.5790 -6.9787 45 1 8.0213 -8.3401 -7.3190 46 1 4.5484 -4.7347 -1.2709 47 1 5.6143 -3.6390 -2.2092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690087533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:33 Heat of formation + Delta-G solvation = -119.823487 kcal Electronic energy + Delta-G solvation = -29104.672848 eV Core-core repulsion = 24814.939915 eV Total energy + Delta-G solvation = -4289.732932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92992 -41.32535 -40.54713 -39.32593 -38.61327 -36.07317 -35.53286 -33.77130 -32.66322 -32.02229 -29.81770 -29.66166 -28.40781 -26.55227 -25.67126 -23.04682 -22.50577 -21.76566 -21.41876 -21.26209 -20.25913 -20.06752 -18.93573 -17.87518 -17.73500 -17.25259 -17.12275 -16.71299 -16.67965 -16.33069 -16.16384 -15.81833 -15.45124 -15.35914 -14.82361 -14.77026 -14.49354 -14.31391 -14.25604 -14.19644 -13.94400 -13.53065 -13.26498 -13.24604 -13.00698 -12.84989 -12.57347 -12.52875 -12.42866 -12.33249 -12.05476 -12.02306 -11.98521 -11.74129 -11.50919 -11.48480 -11.06945 -10.42001 -10.33670 -10.23994 -9.88836 -9.38137 -8.41540 -6.02349 0.00914 1.30033 1.35145 1.44427 1.76953 1.87781 1.94289 2.22768 2.65780 3.00533 3.14566 3.18248 3.34520 3.48338 3.66494 3.71518 3.96404 4.01959 4.11708 4.14864 4.21917 4.27098 4.31422 4.36508 4.42221 4.51839 4.60774 4.66223 4.77841 4.85773 4.89180 4.89565 4.99090 5.02833 5.04574 5.11131 5.12325 5.19105 5.29302 5.37581 5.41442 5.52003 5.80367 5.90310 6.01747 6.30041 6.59137 6.88102 6.90355 7.39076 7.96279 8.76042 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.002060 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.049584 B =13590.340950 C =14211.001007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.326 4.326 8 H 0.055 0.945 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.607 6.607 12 C 0.047 3.953 13 N -0.515 5.515 14 C 0.039 3.961 15 C -0.129 4.129 16 C 0.148 3.852 17 H 0.082 0.918 18 N -0.707 5.707 19 C 0.549 3.451 20 O -0.545 6.545 21 C -0.035 4.035 22 F -0.138 7.138 23 C -0.061 4.061 24 C -0.083 4.083 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.099 4.099 28 C 0.040 3.960 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.228 -12.603 -13.202 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.456 4.456 8 H 0.073 0.927 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.491 6.491 12 C -0.084 4.084 13 N -0.241 5.241 14 C -0.088 4.088 15 C -0.168 4.168 16 C 0.043 3.957 17 H 0.100 0.900 18 N -0.358 5.358 19 C 0.337 3.663 20 O -0.425 6.425 21 C -0.057 4.057 22 F -0.117 7.117 23 C -0.064 4.064 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.135 4.135 28 C -0.089 4.089 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.681 -13.989 -12.148 30.861 hybrid contribution -0.721 2.044 -0.842 2.325 sum 23.961 -11.945 -12.990 29.758 Atomic orbital electron populations 1.69812 1.08172 1.29220 1.50318 1.26137 0.96483 1.02776 0.96123 0.85362 0.79537 0.76677 0.79927 1.18130 1.20137 1.15316 1.18984 0.81466 0.94862 1.50262 0.92733 1.42023 1.05801 1.07547 1.67838 1.20867 0.90798 0.83385 0.81361 1.90537 1.71297 1.32546 1.54677 1.22093 0.90270 0.91015 1.05061 1.64417 1.08146 1.16964 1.34529 1.22996 0.86215 0.98544 1.01061 1.22743 0.96225 0.98037 0.99764 1.21754 0.95854 0.97344 0.80785 0.90010 1.45816 1.64584 1.16663 1.08761 1.18387 0.77848 0.82026 0.88052 1.90806 1.49330 1.50040 1.52273 1.18687 1.11720 0.90409 0.84909 1.91474 1.88819 1.67662 1.63763 1.23454 0.90270 0.92004 1.00651 1.21213 1.01250 0.92751 0.96756 1.22486 1.02403 0.96437 0.94814 1.22544 0.97936 0.96994 0.97951 1.21665 1.01573 0.99649 0.90640 1.23314 0.99076 0.95423 0.91063 0.91176 0.77475 0.89738 0.85779 0.91102 0.88745 0.89674 0.90076 0.75184 0.90000 0.90658 0.90330 0.89767 0.88764 0.90585 0.88026 0.89609 0.91261 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.96 21.67 0.30 -56.09 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 3 Si 0.97 38.41 27.74 68.60 1.90 40.32 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.23 -7.63 6.51 99.48 0.65 -6.99 16 7 C -0.33 -19.05 10.16 84.04 0.85 -18.19 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -27.48 5.09 -306.98 -1.56 -29.05 16 10 C 0.45 19.99 7.42 87.66 0.65 20.64 16 11 O -0.61 -33.32 13.87 -3.06 -0.04 -33.37 16 12 C 0.05 1.40 5.30 85.56 0.45 1.86 16 13 N -0.52 -15.44 5.11 -887.59 -4.54 -19.97 16 14 C 0.04 0.80 6.70 86.45 0.58 1.38 16 15 C -0.13 -2.66 6.67 31.47 0.21 -2.45 16 16 C 0.15 3.90 3.35 46.20 0.15 4.05 16 17 H 0.08 2.56 7.69 -2.39 -0.02 2.54 16 18 N -0.71 -16.78 5.14 -440.23 -2.26 -19.04 16 19 C 0.55 13.90 7.77 86.63 0.67 14.58 16 20 O -0.54 -16.11 13.84 -4.05 -0.06 -16.17 16 21 C -0.04 -0.76 7.42 23.50 0.17 -0.59 16 22 F -0.14 -2.95 16.52 44.97 0.74 -2.21 16 23 C -0.06 -1.09 6.16 -17.00 -0.10 -1.19 16 24 C -0.08 -1.40 4.81 30.52 0.15 -1.25 16 25 C -0.12 -1.29 6.87 31.70 0.22 -1.07 16 26 C -0.12 -0.98 6.94 31.92 0.22 -0.76 16 27 C -0.10 -1.17 6.45 30.86 0.20 -0.97 16 28 C 0.04 1.23 5.19 86.65 0.45 1.68 16 29 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 30 H 0.39 14.90 5.76 -92.71 -0.53 14.36 16 31 H 0.08 2.00 7.99 -2.38 -0.02 1.98 16 32 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.07 1.14 7.68 -2.39 -0.02 1.13 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 8.52 8.07 -92.71 -0.75 7.77 16 38 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 39 H 0.08 1.52 7.68 -2.38 -0.02 1.50 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 2.81 6.43 -2.39 -0.02 2.80 16 47 H 0.05 1.53 7.88 -2.39 -0.02 1.52 16 Total: -1.00 -78.16 382.59 -0.50 -78.65 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.33 Total: 39.66 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 5.35 Total: 17.27 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -8.06 Total: -124.15 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.10 Total: -49.54 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.74 Total: -2.21 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.32 kcal Total: -78.16 -0.50 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690087533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.170 kcal (2) G-P(sol) polarization free energy of solvation -78.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds