Wall clock time and date at job start Tue Mar 31 2020 23:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46908 * 2 1 4 4 N 1.29029 * 124.91665 * 89.99332 * 3 2 1 5 5 C 1.31785 * 117.12371 * 180.02562 * 4 3 2 6 6 C 1.50701 * 122.74664 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47163 * 305.01858 * 6 5 4 8 8 O 1.21286 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00329 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00504 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47063 * 34.99933 * 10 9 7 12 12 C 1.53002 * 109.47427 * 155.00191 * 10 9 7 13 13 N 1.46497 * 109.47089 * 305.00178 * 12 10 9 14 14 C 1.36933 * 120.00275 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99993 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00102 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47007 * 90.00478 * 18 16 14 20 20 H 1.48503 * 109.47009 * 210.00390 * 18 16 14 21 21 H 1.48497 * 109.46930 * 330.00240 * 18 16 14 22 22 C 1.53004 * 109.46986 * 275.00413 * 10 9 7 23 23 C 1.52997 * 109.47236 * 64.99835 * 22 10 9 24 24 C 1.53002 * 109.46817 * 184.99998 * 23 22 10 25 25 C 1.53000 * 109.47060 * 65.00086 * 23 22 10 26 26 C 1.33635 * 114.49989 * 0.23176 * 5 4 3 27 27 S 1.70979 * 124.91914 * 270.00286 * 3 2 1 28 28 H 1.09000 * 109.47299 * 299.99665 * 1 2 3 29 29 H 1.08993 * 109.47055 * 60.00301 * 1 2 3 30 30 H 1.09000 * 109.46338 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47484 * 239.99815 * 2 1 3 32 32 H 1.09005 * 109.47317 * 119.99411 * 2 1 3 33 33 H 1.09009 * 109.46918 * 185.02133 * 6 5 4 34 34 H 1.08996 * 109.47214 * 65.02639 * 6 5 4 35 35 H 0.97004 * 120.00059 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47090 * 65.00091 * 12 10 9 37 37 H 1.09001 * 109.47192 * 184.99923 * 12 10 9 38 38 H 0.97008 * 119.99967 * 359.97438 * 13 12 10 39 39 H 0.96999 * 120.00047 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46917 * 304.99268 * 22 10 9 41 41 H 1.09004 * 109.46741 * 184.99946 * 22 10 9 42 42 H 1.09002 * 109.47153 * 304.99767 * 23 22 10 43 43 H 1.09002 * 109.47075 * 299.99262 * 24 23 22 44 44 H 1.08996 * 109.47407 * 60.00219 * 24 23 22 45 45 H 1.09000 * 109.46986 * 179.97438 * 24 23 22 46 46 H 1.08992 * 109.47399 * 59.99823 * 25 23 22 47 47 H 1.09004 * 109.46724 * 180.02562 * 25 23 22 48 48 H 1.09001 * 109.47194 * 299.99650 * 25 23 22 49 49 H 1.08005 * 126.03792 * 179.76425 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2784 2.1172 1.0580 5 6 2.7131 3.3484 0.8793 6 6 3.0388 4.2721 2.0246 7 6 1.8439 4.3832 2.9359 8 8 0.8278 3.7720 2.6808 9 7 1.9041 5.1617 4.0344 10 6 0.7425 5.2693 4.9207 11 1 0.2227 4.3119 4.9562 12 6 1.2080 5.6494 6.3277 13 7 2.2074 4.6828 6.7893 14 6 2.7707 4.8198 8.0298 15 1 2.4786 5.6408 8.6678 16 6 3.7181 3.9042 8.4669 17 7 4.2599 4.0362 9.6591 18 14 4.2240 2.4846 7.3630 19 1 5.3751 2.8982 6.5210 20 1 4.6154 1.3220 8.2000 21 1 3.0836 2.1051 6.4909 22 6 -0.2065 6.3454 4.3893 23 6 -0.7691 5.9061 3.0360 24 6 -1.6190 7.0337 2.4468 25 6 -1.6358 4.6593 3.2245 26 6 2.8362 3.7123 -0.4006 27 16 2.3585 2.3436 -1.4020 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.8935 -0.5138 0.8901 33 1 3.2918 5.2584 1.6352 34 1 3.8859 3.8739 2.5830 35 1 2.7166 5.6509 4.2383 36 1 1.6487 6.6461 6.3077 37 1 0.3553 5.6427 7.0067 38 1 2.4695 3.9452 6.2163 39 1 4.9216 3.3962 9.9647 40 1 0.3373 7.2825 4.2699 41 1 -1.0254 6.4878 5.0944 42 1 0.0529 5.6780 2.3575 43 1 -2.4411 7.2617 3.1253 44 1 -1.0016 7.9218 2.3125 45 1 -2.0195 6.7209 1.4825 46 1 -2.4577 4.8874 3.9030 47 1 -2.0363 4.3461 2.2603 48 1 -1.0304 3.8560 3.6443 49 1 3.1713 4.6748 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698878899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:17 Heat of formation + Delta-G solvation = 3.226551 kcal Electronic energy + Delta-G solvation = -28269.878637 eV Core-core repulsion = 24551.694731 eV Total energy + Delta-G solvation = -3718.183906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46272 -39.41852 -36.73719 -35.07710 -34.42477 -33.47582 -31.69597 -31.01891 -29.52380 -27.97298 -26.92976 -25.77031 -25.50024 -22.79352 -22.16825 -21.05878 -20.23845 -19.78671 -19.68108 -18.02457 -17.52161 -16.85954 -15.92371 -15.79229 -15.43139 -14.84951 -14.65931 -14.44695 -14.37189 -14.03902 -13.81776 -13.45186 -13.40536 -13.28356 -13.09667 -12.72616 -12.50503 -12.35203 -12.12753 -12.06823 -12.03281 -11.83342 -11.66340 -11.49278 -11.31356 -11.22214 -11.09199 -10.87095 -10.52541 -10.31635 -10.20248 -10.06200 -9.64900 -9.61172 -9.53233 -9.41173 -8.93820 -8.81956 -8.64497 -7.26550 -5.79002 -3.14894 0.60368 1.24552 1.59774 2.68494 2.90605 3.35941 3.43978 3.45468 3.52994 3.88349 4.58031 4.59140 4.81912 4.85304 4.91778 5.00909 5.03987 5.07559 5.13520 5.16315 5.30201 5.37707 5.48966 5.49660 5.54215 5.57498 5.60144 5.64001 5.77332 5.80771 5.88403 5.95641 5.98026 5.99743 6.05805 6.07589 6.08232 6.25000 6.38921 6.43195 6.59603 6.62742 6.79278 6.90763 7.73178 7.82310 7.96796 8.39796 8.53937 9.19077 9.91367 10.11019 11.39218 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009323 B = 0.003898 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.547885 B = 7181.729480 C = 8969.165216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.059 3.941 4 N -0.441 5.441 5 C 0.098 3.902 6 C -0.073 4.073 7 C 0.514 3.486 8 O -0.514 6.514 9 N -0.717 5.717 10 C 0.134 3.866 11 H 0.090 0.910 12 C 0.149 3.851 13 N -0.754 5.754 14 C -0.246 4.246 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.276 1.276 22 C -0.121 4.121 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.261 4.261 27 S 0.097 5.903 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.402 0.598 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.076 0.924 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -0.140 -25.114 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.221 4.221 4 N -0.154 5.154 5 C -0.035 4.035 6 C -0.116 4.116 7 C 0.299 3.701 8 O -0.390 6.390 9 N -0.370 5.370 10 C 0.030 3.970 11 H 0.108 0.892 12 C 0.021 3.979 13 N -0.400 5.400 14 C -0.376 4.376 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.202 1.202 22 C -0.160 4.160 23 C -0.110 4.110 24 C -0.203 4.203 25 C -0.193 4.193 26 C -0.400 4.400 27 S 0.352 5.648 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.237 0.763 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.213 -0.926 -25.627 26.639 hybrid contribution 1.145 -0.077 0.175 1.160 sum -6.068 -1.002 -25.452 26.185 Atomic orbital electron populations 1.21755 0.93373 1.02380 1.02953 1.20218 0.96908 0.87592 1.04041 1.27064 1.02905 1.01682 0.90401 1.65999 1.12772 1.05559 1.31038 1.19555 0.99735 0.91234 0.92941 1.20292 0.98757 0.98884 0.93665 1.20131 0.89057 0.79304 0.81601 1.90713 1.31375 1.44096 1.72802 1.46012 1.17381 1.48647 1.24923 1.21395 0.86286 1.00099 0.89256 0.89203 1.20936 0.92826 0.93406 0.90693 1.42701 1.48468 1.30727 1.18152 1.19049 1.16828 1.10314 0.91369 0.89172 1.24647 0.99136 0.98626 0.96444 1.69699 1.31892 1.38281 1.18213 0.86604 0.78542 0.83356 0.80417 1.21092 1.21686 1.20194 1.22004 0.98721 0.98225 0.97050 1.21123 0.98339 0.94847 0.96647 1.21866 0.99790 0.98361 1.00304 1.21811 0.98716 0.98395 1.00420 1.26697 1.13366 1.04247 0.95650 1.83813 1.61368 1.06049 1.13556 0.91458 0.92598 0.91547 0.89906 0.88744 0.87483 0.87153 0.76325 0.95023 0.94232 0.80355 0.93035 0.91890 0.91118 0.90795 0.93082 0.93339 0.93381 0.94330 0.94080 0.90572 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.95 16 2 C -0.05 -0.44 6.52 -27.88 -0.18 -0.62 16 3 C 0.06 0.71 6.64 -13.46 -0.09 0.62 16 4 N -0.44 -6.53 9.68 -8.06 -0.08 -6.61 16 5 C 0.10 1.28 5.64 -84.22 -0.47 0.80 16 6 C -0.07 -0.87 6.19 -29.04 -0.18 -1.05 16 7 C 0.51 7.54 6.35 -10.99 -0.07 7.47 16 8 O -0.51 -8.82 10.40 5.55 0.06 -8.77 16 9 N -0.72 -10.27 4.47 -53.81 -0.24 -10.51 16 10 C 0.13 2.08 2.33 -67.93 -0.16 1.92 16 11 H 0.09 1.60 5.92 -51.93 -0.31 1.29 16 12 C 0.15 2.75 5.82 -4.04 -0.02 2.73 16 13 N -0.75 -17.53 5.24 -59.91 -0.31 -17.84 16 14 C -0.25 -6.88 10.47 -15.06 -0.16 -7.03 16 15 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 18 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.28 -6.88 6.52 56.52 0.37 -6.52 16 22 C -0.12 -1.58 4.36 -26.73 -0.12 -1.69 16 23 C -0.09 -1.19 2.38 -90.62 -0.22 -1.41 16 24 C -0.15 -1.63 9.19 37.16 0.34 -1.29 16 25 C -0.14 -1.93 8.04 37.16 0.30 -1.64 16 26 C -0.26 -2.75 11.07 29.12 0.32 -2.43 16 27 S 0.10 0.95 23.18 -107.50 -2.49 -1.54 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.89 8.03 -51.92 -0.42 0.48 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.40 5.29 8.60 -40.82 -0.35 4.94 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.36 8.49 5.20 -40.82 -0.21 8.28 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.07 5.19 -51.93 -0.27 0.80 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 1.26 4.76 -51.93 -0.25 1.01 16 49 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -34.00 400.05 -9.57 -43.57 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.16 Total: 10.89 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.43 Total: -4.44 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 0.14 Total: -63.44 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.00 -9.57 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698878899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.795 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds