Wall clock time and date at job start Tue Mar 31 2020 23:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46908 * 2 1 4 4 N 1.29029 * 124.91665 * 89.99332 * 3 2 1 5 5 C 1.31785 * 117.12371 * 180.02562 * 4 3 2 6 6 C 1.50701 * 122.74664 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47163 * 305.01858 * 6 5 4 8 8 O 1.21286 * 120.00048 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00329 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00504 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47063 * 34.99933 * 10 9 7 12 12 C 1.53002 * 109.47427 * 155.00191 * 10 9 7 13 13 N 1.46497 * 109.47089 * 305.00178 * 12 10 9 14 14 C 1.36933 * 120.00275 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99993 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00102 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47007 * 90.00478 * 18 16 14 20 20 H 1.48503 * 109.47009 * 210.00390 * 18 16 14 21 21 H 1.48497 * 109.46930 * 330.00240 * 18 16 14 22 22 C 1.53004 * 109.46986 * 275.00413 * 10 9 7 23 23 C 1.52997 * 109.47236 * 64.99835 * 22 10 9 24 24 C 1.53002 * 109.46817 * 184.99998 * 23 22 10 25 25 C 1.53000 * 109.47060 * 65.00086 * 23 22 10 26 26 C 1.33635 * 114.49989 * 0.23176 * 5 4 3 27 27 S 1.70979 * 124.91914 * 270.00286 * 3 2 1 28 28 H 1.09000 * 109.47299 * 299.99665 * 1 2 3 29 29 H 1.08993 * 109.47055 * 60.00301 * 1 2 3 30 30 H 1.09000 * 109.46338 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47484 * 239.99815 * 2 1 3 32 32 H 1.09005 * 109.47317 * 119.99411 * 2 1 3 33 33 H 1.09009 * 109.46918 * 185.02133 * 6 5 4 34 34 H 1.08996 * 109.47214 * 65.02639 * 6 5 4 35 35 H 0.97004 * 120.00059 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47090 * 65.00091 * 12 10 9 37 37 H 1.09001 * 109.47192 * 184.99923 * 12 10 9 38 38 H 0.97008 * 119.99967 * 359.97438 * 13 12 10 39 39 H 0.96999 * 120.00047 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46917 * 304.99268 * 22 10 9 41 41 H 1.09004 * 109.46741 * 184.99946 * 22 10 9 42 42 H 1.09002 * 109.47153 * 304.99767 * 23 22 10 43 43 H 1.09002 * 109.47075 * 299.99262 * 24 23 22 44 44 H 1.08996 * 109.47407 * 60.00219 * 24 23 22 45 45 H 1.09000 * 109.46986 * 179.97438 * 24 23 22 46 46 H 1.08992 * 109.47399 * 59.99823 * 25 23 22 47 47 H 1.09004 * 109.46724 * 180.02562 * 25 23 22 48 48 H 1.09001 * 109.47194 * 299.99650 * 25 23 22 49 49 H 1.08005 * 126.03792 * 179.76425 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2784 2.1172 1.0580 5 6 2.7131 3.3484 0.8793 6 6 3.0388 4.2721 2.0246 7 6 1.8439 4.3832 2.9359 8 8 0.8278 3.7720 2.6808 9 7 1.9041 5.1617 4.0344 10 6 0.7425 5.2693 4.9207 11 1 0.2227 4.3119 4.9562 12 6 1.2080 5.6494 6.3277 13 7 2.2074 4.6828 6.7893 14 6 2.7707 4.8198 8.0298 15 1 2.4786 5.6408 8.6678 16 6 3.7181 3.9042 8.4669 17 7 4.2599 4.0362 9.6591 18 14 4.2240 2.4846 7.3630 19 1 5.3751 2.8982 6.5210 20 1 4.6154 1.3220 8.2000 21 1 3.0836 2.1051 6.4909 22 6 -0.2065 6.3454 4.3893 23 6 -0.7691 5.9061 3.0360 24 6 -1.6190 7.0337 2.4468 25 6 -1.6358 4.6593 3.2245 26 6 2.8362 3.7123 -0.4006 27 16 2.3585 2.3436 -1.4020 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.8935 -0.5138 0.8901 33 1 3.2918 5.2584 1.6352 34 1 3.8859 3.8739 2.5830 35 1 2.7166 5.6509 4.2383 36 1 1.6487 6.6461 6.3077 37 1 0.3553 5.6427 7.0067 38 1 2.4695 3.9452 6.2163 39 1 4.9216 3.3962 9.9647 40 1 0.3373 7.2825 4.2699 41 1 -1.0254 6.4878 5.0944 42 1 0.0529 5.6780 2.3575 43 1 -2.4411 7.2617 3.1253 44 1 -1.0016 7.9218 2.3125 45 1 -2.0195 6.7209 1.4825 46 1 -2.4577 4.8874 3.9030 47 1 -2.0363 4.3461 2.2603 48 1 -1.0304 3.8560 3.6443 49 1 3.1713 4.6748 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698878899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:16 Heat of formation + Delta-G solvation = -19.120825 kcal Electronic energy + Delta-G solvation = -28270.847692 eV Core-core repulsion = 24551.694731 eV Total energy + Delta-G solvation = -3719.152961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46467 -40.44240 -37.98459 -36.56340 -35.20048 -35.00071 -33.36672 -32.24744 -30.80649 -28.89179 -27.96324 -27.32660 -26.30939 -24.36419 -23.35008 -22.31521 -21.37945 -20.80442 -20.59670 -19.82078 -18.67312 -17.96099 -17.05630 -16.99728 -16.53739 -16.27155 -15.96219 -15.47937 -15.32390 -15.30186 -14.90816 -14.77876 -14.63828 -14.43167 -14.37657 -13.92587 -13.91290 -13.49624 -13.30342 -13.08034 -13.04007 -12.98934 -12.89467 -12.56857 -12.53080 -12.40652 -12.31465 -12.12371 -12.04323 -11.86953 -11.66533 -11.39562 -11.25603 -11.03426 -10.64732 -10.46200 -10.28238 -9.84872 -9.61913 -9.32283 -8.05268 -5.37645 -0.20940 0.47636 0.78147 1.32820 1.36918 1.42439 1.78176 1.81133 2.43299 2.44890 3.11819 3.26960 3.48888 3.76543 3.87679 4.05953 4.09799 4.11128 4.13618 4.20393 4.29365 4.33346 4.36453 4.41369 4.50635 4.62693 4.65278 4.76093 4.79554 4.87518 4.88252 4.92384 4.93226 4.99107 5.03336 5.07856 5.15343 5.17185 5.24516 5.30048 5.37970 5.56105 5.63566 5.68641 5.75336 6.19034 6.70907 6.92234 7.05329 7.44001 7.81538 7.99608 9.16302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009323 B = 0.003898 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.547885 B = 7181.729480 C = 8969.165216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.035 3.965 4 N -0.488 5.488 5 C 0.067 3.933 6 C -0.069 4.069 7 C 0.509 3.491 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.147 3.853 11 H 0.065 0.935 12 C 0.148 3.852 13 N -0.756 5.756 14 C -0.230 4.230 15 H 0.064 0.936 16 C -0.055 4.055 17 N -0.980 5.980 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.297 1.297 21 H -0.271 1.271 22 C -0.113 4.113 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.256 4.256 27 S 0.146 5.854 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.035 0.965 48 H 0.048 0.952 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 0.614 -28.243 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.244 4.244 4 N -0.202 5.202 5 C -0.065 4.065 6 C -0.111 4.111 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.369 5.369 10 C 0.042 3.958 11 H 0.083 0.917 12 C 0.022 3.978 13 N -0.402 5.402 14 C -0.361 4.361 15 H 0.082 0.918 16 C -0.247 4.247 17 N -0.631 5.631 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.224 1.224 21 H -0.197 1.197 22 C -0.151 4.151 23 C -0.104 4.104 24 C -0.198 4.198 25 C -0.187 4.187 26 C -0.395 4.395 27 S 0.402 5.598 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.245 0.755 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.261 -0.148 -28.800 29.702 hybrid contribution 1.065 -0.264 1.110 1.561 sum -6.195 -0.413 -27.690 28.378 Atomic orbital electron populations 1.21705 0.93296 1.03266 1.01593 1.20339 0.96909 0.86775 1.04876 1.27453 1.03025 1.02699 0.91181 1.65999 1.14294 1.06880 1.33027 1.19765 1.01354 0.91239 0.94140 1.20349 0.96974 1.00742 0.93046 1.20671 0.89640 0.78467 0.81653 1.90712 1.32756 1.45004 1.73419 1.45980 1.17262 1.48877 1.24742 1.21128 0.86980 0.99740 0.87992 0.91721 1.21100 0.91547 0.92842 0.92340 1.42707 1.49129 1.31719 1.16620 1.19059 1.15825 1.08755 0.92431 0.91828 1.25337 0.99955 1.01546 0.97833 1.69855 1.33242 1.39669 1.20328 0.85545 0.78554 0.79827 0.78559 1.19577 1.22438 1.19699 1.21938 0.98395 0.97752 0.97055 1.21040 0.98041 0.94960 0.96382 1.21805 0.99790 0.97828 1.00346 1.21724 0.98690 0.98247 1.00046 1.27112 1.11694 1.05609 0.95103 1.83564 1.59960 1.04747 1.11546 0.94728 0.91892 0.89552 0.87050 0.89894 0.83829 0.87224 0.75514 0.93620 0.94518 0.80301 0.93311 0.90267 0.90496 0.92003 0.92389 0.92114 0.93219 0.93474 0.94589 0.93302 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.90 71.98 0.71 -1.75 16 2 C -0.05 -0.87 6.52 29.85 0.19 -0.68 16 3 C 0.03 0.81 6.64 88.52 0.59 1.40 16 4 N -0.49 -14.36 9.68 -179.40 -1.74 -16.10 16 5 C 0.07 1.66 5.64 41.52 0.23 1.90 16 6 C -0.07 -1.52 6.19 29.10 0.18 -1.34 16 7 C 0.51 14.53 6.35 87.65 0.56 15.08 16 8 O -0.54 -18.72 10.40 -3.05 -0.03 -18.75 16 9 N -0.72 -19.64 4.47 -442.54 -1.98 -21.61 16 10 C 0.15 4.44 2.33 44.99 0.10 4.54 16 11 H 0.06 2.33 5.92 -2.39 -0.01 2.31 16 12 C 0.15 5.34 5.82 86.38 0.50 5.84 16 13 N -0.76 -34.79 5.24 -343.46 -1.80 -36.59 16 14 C -0.23 -12.95 10.47 84.03 0.88 -12.07 16 15 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 16 C -0.05 -3.23 5.50 84.86 0.47 -2.77 16 17 N -0.98 -62.66 13.97 21.65 0.30 -62.35 16 18 Si 0.95 46.84 27.74 68.60 1.90 48.74 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 21 H -0.27 -13.04 6.52 99.48 0.65 -12.39 16 22 C -0.11 -2.73 4.36 30.59 0.13 -2.60 16 23 C -0.09 -2.12 2.38 -10.79 -0.03 -2.14 16 24 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 25 C -0.13 -3.65 8.04 71.98 0.58 -3.07 16 26 C -0.26 -4.76 11.07 66.77 0.74 -4.02 16 27 S 0.15 2.53 23.18 -56.49 -1.31 1.22 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.14 1.95 8.03 -2.38 -0.02 1.93 16 34 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.41 10.04 8.60 -92.71 -0.80 9.24 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.36 16.73 5.20 -92.70 -0.48 16.24 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.71 5.19 -2.39 -0.01 1.70 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.66 4.76 -2.39 -0.01 1.64 16 49 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -75.36 400.05 1.47 -73.88 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.38 Total: 35.36 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.51 Total: -3.79 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -5.21 Total: -136.66 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.03 Total: -18.75 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.74 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -75.36 1.47 -73.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698878899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.761 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds