Wall clock time and date at job start Tue Mar 31 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47193 * 2 1 4 4 N 1.29027 * 124.91909 * 90.00085 * 3 2 1 5 5 C 1.31780 * 117.12238 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74671 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47408 * 305.02640 * 6 5 4 8 8 O 1.21289 * 119.99681 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00360 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00249 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47062 * 324.99615 * 10 9 7 12 12 C 1.53004 * 109.47298 * 204.99890 * 10 9 7 13 13 N 1.46506 * 109.46993 * 54.99634 * 12 10 9 14 14 C 1.36932 * 120.00065 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99892 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47088 * 59.99728 * 18 16 14 20 20 H 1.48499 * 109.47223 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47039 * 299.99845 * 18 16 14 22 22 C 1.52996 * 109.47345 * 84.99769 * 10 9 7 23 23 C 1.52997 * 109.47276 * 295.00054 * 22 10 9 24 24 C 1.53006 * 109.47164 * 294.99872 * 23 22 10 25 25 C 1.52999 * 109.47269 * 175.00368 * 23 22 10 26 26 C 1.33641 * 114.50345 * 0.23636 * 5 4 3 27 27 S 1.70979 * 124.91091 * 269.99873 * 3 2 1 28 28 H 1.09001 * 109.47301 * 300.00081 * 1 2 3 29 29 H 1.08997 * 109.47037 * 60.00096 * 1 2 3 30 30 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47190 * 239.99377 * 2 1 3 32 32 H 1.09004 * 109.47420 * 119.99777 * 2 1 3 33 33 H 1.09005 * 109.46838 * 185.02860 * 6 5 4 34 34 H 1.09002 * 109.46856 * 65.03144 * 6 5 4 35 35 H 0.97005 * 119.99580 * 359.97438 * 9 7 6 36 36 H 1.08992 * 109.47190 * 174.99772 * 12 10 9 37 37 H 1.09000 * 109.46906 * 294.99854 * 12 10 9 38 38 H 0.96999 * 119.99725 * 0.02562 * 13 12 10 39 39 H 0.96998 * 120.00230 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47249 * 174.99546 * 22 10 9 41 41 H 1.09001 * 109.47456 * 55.00193 * 22 10 9 42 42 H 1.09000 * 109.47140 * 54.99820 * 23 22 10 43 43 H 1.09001 * 109.47002 * 59.99738 * 24 23 22 44 44 H 1.08993 * 109.46955 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47050 * 300.00004 * 24 23 22 46 46 H 1.09001 * 109.47362 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.46716 * 299.99747 * 25 23 22 48 48 H 1.09000 * 109.47486 * 59.99665 * 25 23 22 49 49 H 1.08003 * 126.03717 * 179.76986 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7143 3.3479 0.8792 6 6 3.0404 4.2716 2.0244 7 6 1.8452 4.3837 2.9355 8 8 0.8288 3.7731 2.6802 9 7 1.9061 5.1615 4.0344 10 6 0.7444 5.2700 4.9203 11 1 -0.1695 5.2306 4.3276 12 6 0.8035 6.5975 5.6787 13 7 0.9140 7.7018 4.7223 14 6 0.9832 8.9932 5.1725 15 1 0.9559 9.1977 6.2326 16 6 1.0873 10.0395 4.2663 17 7 1.1201 9.7903 2.9743 18 14 1.1810 11.8012 4.8804 19 1 2.3743 11.9595 5.7500 20 1 1.2872 12.7243 3.7221 21 1 -0.0436 12.1202 5.6575 22 6 0.7548 4.1112 5.9192 23 6 0.5702 2.7902 5.1697 24 6 -0.8179 2.7581 4.5269 25 6 0.7048 1.6240 6.1509 26 6 2.8380 3.7116 -0.4008 27 16 2.3585 2.3433 -1.4021 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2940 5.2576 1.6350 34 1 3.8871 3.8728 2.5831 35 1 2.7194 5.6490 4.2391 36 1 -0.1038 6.7187 6.2704 37 1 1.6709 6.6005 6.3389 38 1 0.9382 7.5182 3.7702 39 1 1.1933 10.5214 2.3411 40 1 -0.0582 4.2401 6.6339 41 1 1.7065 4.0977 6.4503 42 1 1.3316 2.7027 4.3946 43 1 -0.9139 3.5889 3.8279 44 1 -0.9495 1.8168 3.9934 45 1 -1.5793 2.8455 5.3020 46 1 0.5738 0.6828 5.6169 47 1 1.6937 1.6468 6.6088 48 1 -0.0566 1.7114 6.9260 49 1 3.1740 4.6738 -0.7583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698878906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:19 Heat of formation + Delta-G solvation = -1.037189 kcal Electronic energy + Delta-G solvation = -28162.011717 eV Core-core repulsion = 24443.642921 eV Total energy + Delta-G solvation = -3718.368796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30958 -39.25697 -36.56576 -34.88438 -34.34087 -33.35142 -31.55829 -30.76884 -29.17706 -27.80246 -26.79083 -25.51990 -25.39839 -22.94694 -22.24603 -20.94608 -20.06145 -19.66211 -19.52723 -17.76215 -17.18479 -16.65187 -15.82609 -15.45491 -15.41047 -14.76320 -14.58830 -14.53966 -14.06532 -13.86435 -13.75004 -13.43290 -13.24930 -13.00261 -12.91358 -12.88537 -12.36416 -12.22638 -12.01961 -11.94667 -11.83671 -11.69893 -11.45634 -11.32166 -11.26830 -10.98940 -10.93369 -10.79427 -10.45126 -10.20252 -10.13170 -9.95963 -9.70203 -9.55929 -9.39273 -9.26491 -8.91612 -8.68093 -8.46267 -6.96112 -5.78991 -3.08240 0.73126 1.36723 1.72486 2.79654 3.11312 3.41957 3.46784 3.47506 3.70204 3.98072 4.56050 4.69718 4.91716 5.02792 5.05838 5.09215 5.17240 5.28166 5.29932 5.33490 5.40832 5.51292 5.53581 5.61984 5.66382 5.70889 5.73232 5.79270 5.83157 5.95891 6.03441 6.06205 6.13260 6.17496 6.19262 6.19894 6.26708 6.38411 6.51358 6.57608 6.72676 6.80946 6.93853 7.07645 7.66867 7.82911 8.01206 8.39226 8.72835 9.51039 10.07636 10.43402 11.43288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.003282 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.372530 B = 8529.265518 C =10463.274186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.052 3.948 4 N -0.439 5.439 5 C 0.095 3.905 6 C -0.071 4.071 7 C 0.517 3.483 8 O -0.518 6.518 9 N -0.712 5.712 10 C 0.139 3.861 11 H 0.089 0.911 12 C 0.144 3.856 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.121 4.121 23 C -0.092 4.092 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.254 4.254 27 S 0.097 5.903 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.402 0.598 36 H 0.031 0.969 37 H 0.023 0.977 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.034 0.966 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -20.403 -5.148 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.227 4.227 4 N -0.152 5.152 5 C -0.037 4.037 6 C -0.114 4.114 7 C 0.302 3.698 8 O -0.394 6.394 9 N -0.364 5.364 10 C 0.034 3.966 11 H 0.107 0.893 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.160 4.160 23 C -0.110 4.110 24 C -0.191 4.191 25 C -0.202 4.202 26 C -0.393 4.393 27 S 0.351 5.649 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.236 0.764 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.206 -21.117 -5.801 22.133 hybrid contribution 0.686 2.028 0.799 2.286 sum 3.892 -19.088 -5.002 20.113 Atomic orbital electron populations 1.21760 0.93464 1.02212 1.03095 1.20170 0.96829 0.87673 1.03773 1.27004 1.03463 1.01623 0.90619 1.65974 1.12700 1.05579 1.30996 1.19566 0.99883 0.91171 0.93061 1.20271 0.98362 0.99173 0.93567 1.20078 0.89265 0.79158 0.81287 1.90704 1.31576 1.44524 1.72608 1.45921 1.17312 1.48127 1.25038 1.21305 0.89599 0.94569 0.91102 0.89347 1.20965 0.98635 0.86143 0.92672 1.42334 1.88960 1.01260 1.04970 1.19177 1.42642 0.83295 0.92184 0.91257 1.24733 1.02896 0.97900 0.95275 1.69652 1.57271 1.31011 1.00066 0.86273 0.77852 0.84788 0.77279 1.21292 1.21719 1.21293 1.22016 1.01714 0.94509 0.97808 1.21132 0.99319 0.93291 0.97272 1.21781 0.95149 1.02366 0.99760 1.21853 1.00722 0.98457 0.99151 1.26781 1.12628 1.04221 0.95695 1.83821 1.61363 1.06147 1.13525 0.91462 0.92523 0.91697 0.90050 0.88992 0.87072 0.87678 0.76389 0.95117 0.95919 0.77994 0.93491 0.91462 0.92152 0.90117 0.90681 0.94029 0.94679 0.93333 0.93484 0.93360 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.04 -0.39 6.52 -27.88 -0.18 -0.58 16 3 C 0.05 0.63 6.64 -13.46 -0.09 0.54 16 4 N -0.44 -6.39 9.68 -8.05 -0.08 -6.46 16 5 C 0.10 1.33 5.64 -84.22 -0.47 0.85 16 6 C -0.07 -0.91 6.19 -29.03 -0.18 -1.09 16 7 C 0.52 8.16 6.35 -10.99 -0.07 8.09 16 8 O -0.52 -9.44 10.40 5.55 0.06 -9.38 16 9 N -0.71 -11.05 4.47 -53.81 -0.24 -11.29 16 10 C 0.14 2.31 2.33 -67.93 -0.16 2.15 16 11 H 0.09 1.69 5.92 -51.93 -0.31 1.38 16 12 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 13 N -0.73 -17.90 5.43 -59.91 -0.33 -18.23 16 14 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.12 -1.73 4.36 -26.73 -0.12 -1.84 16 23 C -0.09 -1.31 2.38 -90.62 -0.22 -1.53 16 24 C -0.13 -2.03 8.04 37.16 0.30 -1.73 16 25 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 26 C -0.25 -3.12 11.07 29.12 0.32 -2.80 16 27 S 0.10 1.04 23.18 -107.50 -2.49 -1.45 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 1.29 8.03 -51.93 -0.42 0.88 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 5.90 8.60 -40.82 -0.35 5.54 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.31 5.19 -51.93 -0.27 1.04 16 43 H 0.07 1.32 4.76 -51.93 -0.25 1.07 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.18 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -32.13 403.17 -9.93 -42.06 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.20 Total: 13.26 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.43 Total: -4.76 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.08 Total: -62.93 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.06 Total: -9.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.13 -9.93 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698878906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.025 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds