Wall clock time and date at job start Tue Mar 31 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47193 * 2 1 4 4 N 1.29027 * 124.91909 * 90.00085 * 3 2 1 5 5 C 1.31780 * 117.12238 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74671 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47408 * 305.02640 * 6 5 4 8 8 O 1.21289 * 119.99681 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00360 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00249 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47062 * 324.99615 * 10 9 7 12 12 C 1.53004 * 109.47298 * 204.99890 * 10 9 7 13 13 N 1.46506 * 109.46993 * 54.99634 * 12 10 9 14 14 C 1.36932 * 120.00065 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99892 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47088 * 59.99728 * 18 16 14 20 20 H 1.48499 * 109.47223 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47039 * 299.99845 * 18 16 14 22 22 C 1.52996 * 109.47345 * 84.99769 * 10 9 7 23 23 C 1.52997 * 109.47276 * 295.00054 * 22 10 9 24 24 C 1.53006 * 109.47164 * 294.99872 * 23 22 10 25 25 C 1.52999 * 109.47269 * 175.00368 * 23 22 10 26 26 C 1.33641 * 114.50345 * 0.23636 * 5 4 3 27 27 S 1.70979 * 124.91091 * 269.99873 * 3 2 1 28 28 H 1.09001 * 109.47301 * 300.00081 * 1 2 3 29 29 H 1.08997 * 109.47037 * 60.00096 * 1 2 3 30 30 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47190 * 239.99377 * 2 1 3 32 32 H 1.09004 * 109.47420 * 119.99777 * 2 1 3 33 33 H 1.09005 * 109.46838 * 185.02860 * 6 5 4 34 34 H 1.09002 * 109.46856 * 65.03144 * 6 5 4 35 35 H 0.97005 * 119.99580 * 359.97438 * 9 7 6 36 36 H 1.08992 * 109.47190 * 174.99772 * 12 10 9 37 37 H 1.09000 * 109.46906 * 294.99854 * 12 10 9 38 38 H 0.96999 * 119.99725 * 0.02562 * 13 12 10 39 39 H 0.96998 * 120.00230 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.47249 * 174.99546 * 22 10 9 41 41 H 1.09001 * 109.47456 * 55.00193 * 22 10 9 42 42 H 1.09000 * 109.47140 * 54.99820 * 23 22 10 43 43 H 1.09001 * 109.47002 * 59.99738 * 24 23 22 44 44 H 1.08993 * 109.46955 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47050 * 300.00004 * 24 23 22 46 46 H 1.09001 * 109.47362 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.46716 * 299.99747 * 25 23 22 48 48 H 1.09000 * 109.47486 * 59.99665 * 25 23 22 49 49 H 1.08003 * 126.03717 * 179.76986 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7143 3.3479 0.8792 6 6 3.0404 4.2716 2.0244 7 6 1.8452 4.3837 2.9355 8 8 0.8288 3.7731 2.6802 9 7 1.9061 5.1615 4.0344 10 6 0.7444 5.2700 4.9203 11 1 -0.1695 5.2306 4.3276 12 6 0.8035 6.5975 5.6787 13 7 0.9140 7.7018 4.7223 14 6 0.9832 8.9932 5.1725 15 1 0.9559 9.1977 6.2326 16 6 1.0873 10.0395 4.2663 17 7 1.1201 9.7903 2.9743 18 14 1.1810 11.8012 4.8804 19 1 2.3743 11.9595 5.7500 20 1 1.2872 12.7243 3.7221 21 1 -0.0436 12.1202 5.6575 22 6 0.7548 4.1112 5.9192 23 6 0.5702 2.7902 5.1697 24 6 -0.8179 2.7581 4.5269 25 6 0.7048 1.6240 6.1509 26 6 2.8380 3.7116 -0.4008 27 16 2.3585 2.3433 -1.4021 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2940 5.2576 1.6350 34 1 3.8871 3.8728 2.5831 35 1 2.7194 5.6490 4.2391 36 1 -0.1038 6.7187 6.2704 37 1 1.6709 6.6005 6.3389 38 1 0.9382 7.5182 3.7702 39 1 1.1933 10.5214 2.3411 40 1 -0.0582 4.2401 6.6339 41 1 1.7065 4.0977 6.4503 42 1 1.3316 2.7027 4.3946 43 1 -0.9139 3.5889 3.8279 44 1 -0.9495 1.8168 3.9934 45 1 -1.5793 2.8455 5.3020 46 1 0.5738 0.6828 5.6169 47 1 1.6937 1.6468 6.6088 48 1 -0.0566 1.7114 6.9260 49 1 3.1740 4.6738 -0.7583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698878906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:19 Heat of formation + Delta-G solvation = -21.001498 kcal Electronic energy + Delta-G solvation = -28162.877435 eV Core-core repulsion = 24443.642921 eV Total energy + Delta-G solvation = -3719.234513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41167 -40.38471 -37.89238 -36.43203 -35.16291 -34.93664 -33.08778 -32.07389 -30.56460 -28.84986 -27.93123 -27.16428 -26.26998 -24.67157 -23.32066 -22.21843 -21.30617 -20.77243 -20.56695 -19.26947 -18.63897 -17.87963 -17.11578 -16.87062 -16.35932 -16.32641 -15.76482 -15.48265 -15.30245 -15.21035 -15.03089 -14.69940 -14.50274 -14.41141 -14.26015 -13.88992 -13.69056 -13.27105 -13.21793 -13.07029 -12.96571 -12.84633 -12.75194 -12.54129 -12.52482 -12.32954 -12.28873 -12.12361 -11.99725 -11.87473 -11.59124 -11.35860 -11.19075 -10.95311 -10.60225 -10.45863 -10.25436 -9.77099 -9.60068 -8.99136 -7.93020 -5.22028 -0.19180 0.48901 0.80125 1.48664 1.50965 1.56959 1.78754 1.90395 2.49212 2.57609 3.12724 3.40940 3.68750 3.80354 4.00253 4.11148 4.14378 4.15589 4.25314 4.27822 4.33445 4.37480 4.42369 4.46630 4.52048 4.68935 4.70414 4.77819 4.82135 4.90554 4.92534 4.96040 4.96106 5.00757 5.06454 5.10617 5.18337 5.20882 5.27859 5.34451 5.41774 5.51796 5.61252 5.69048 5.75882 6.27698 6.76483 6.91087 7.35344 7.49783 8.09362 8.33956 9.29628 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.003282 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.372530 B = 8529.265518 C =10463.274186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.038 3.962 4 N -0.473 5.473 5 C 0.072 3.928 6 C -0.066 4.066 7 C 0.512 3.488 8 O -0.545 6.545 9 N -0.710 5.710 10 C 0.151 3.849 11 H 0.060 0.940 12 C 0.146 3.854 13 N -0.741 5.741 14 C -0.245 4.245 15 H 0.077 0.923 16 C -0.072 4.072 17 N -0.966 5.966 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.298 1.298 21 H -0.282 1.282 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.268 4.268 27 S 0.139 5.861 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.406 0.594 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -21.306 -4.491 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.241 4.241 4 N -0.187 5.187 5 C -0.060 4.060 6 C -0.108 4.108 7 C 0.298 3.702 8 O -0.422 6.422 9 N -0.362 5.362 10 C 0.046 3.954 11 H 0.078 0.922 12 C 0.019 3.981 13 N -0.384 5.384 14 C -0.377 4.377 15 H 0.094 0.906 16 C -0.264 4.264 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.202 1.202 20 H -0.224 1.224 21 H -0.208 1.208 22 C -0.151 4.151 23 C -0.105 4.105 24 C -0.183 4.183 25 C -0.196 4.196 26 C -0.407 4.407 27 S 0.394 5.606 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.242 0.758 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.961 -22.043 -5.106 22.971 hybrid contribution 0.405 2.239 0.569 2.345 sum 4.366 -19.805 -4.537 20.782 Atomic orbital electron populations 1.21721 0.93526 1.03309 1.01492 1.20331 0.96628 0.86288 1.05194 1.27570 1.02822 1.02762 0.90899 1.65991 1.14006 1.06221 1.32465 1.19747 1.00950 0.91473 0.93803 1.20280 0.97510 0.99848 0.93168 1.20590 0.89815 0.78477 0.81281 1.90697 1.32836 1.45534 1.73160 1.45882 1.17033 1.48193 1.25082 1.21060 0.89020 0.94197 0.91156 0.92158 1.21093 0.98926 0.85915 0.92182 1.42492 1.88893 1.01784 1.05227 1.19583 1.40993 0.84559 0.92525 0.90558 1.25513 1.03683 1.01749 0.95485 1.69812 1.59092 1.31661 1.01117 0.85246 0.78117 0.80039 0.76529 1.20157 1.22404 1.20819 1.21941 1.02840 0.93179 0.97141 1.21032 0.97926 0.94276 0.97249 1.21679 0.96338 1.00829 0.99434 1.21785 1.01722 0.97309 0.98766 1.27093 1.12305 1.05499 0.95804 1.83584 1.60227 1.04743 1.12031 0.94565 0.92522 0.89256 0.87149 0.88994 0.86061 0.85669 0.75835 0.95118 0.94434 0.79276 0.94139 0.90532 0.90707 0.92003 0.93505 0.94558 0.93546 0.93255 0.92446 0.92279 0.79095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.04 -0.74 6.52 29.85 0.19 -0.55 16 3 C 0.04 0.91 6.64 88.52 0.59 1.50 16 4 N -0.47 -13.87 9.68 -179.40 -1.74 -15.61 16 5 C 0.07 2.02 5.64 41.52 0.23 2.26 16 6 C -0.07 -1.70 6.19 29.10 0.18 -1.52 16 7 C 0.51 16.50 6.35 87.66 0.56 17.06 16 8 O -0.54 -20.60 10.40 -3.06 -0.03 -20.64 16 9 N -0.71 -22.16 4.47 -442.55 -1.98 -24.13 16 10 C 0.15 5.03 2.33 44.99 0.10 5.13 16 11 H 0.06 2.39 5.92 -2.39 -0.01 2.37 16 12 C 0.15 5.57 5.82 86.38 0.50 6.07 16 13 N -0.74 -36.45 5.43 -343.44 -1.87 -38.32 16 14 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 17 N -0.97 -58.17 13.06 21.65 0.28 -57.88 16 18 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.11 -3.05 4.36 30.59 0.13 -2.92 16 23 C -0.09 -2.42 2.38 -10.79 -0.03 -2.45 16 24 C -0.13 -3.87 8.04 71.98 0.58 -3.29 16 25 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 26 C -0.27 -6.47 11.07 66.78 0.74 -5.73 16 27 S 0.14 2.85 23.18 -56.49 -1.31 1.54 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.12 2.82 8.03 -2.38 -0.02 2.80 16 34 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.41 11.84 8.60 -92.70 -0.80 11.04 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.37 19.96 7.33 -92.71 -0.68 19.28 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 2.01 5.19 -2.39 -0.01 1.99 16 43 H 0.05 1.72 4.76 -2.39 -0.01 1.70 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.19 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.65 403.17 1.33 -68.31 By element: Atomic # 1 Polarization: 44.52 SS G_CDS: -0.52 Total: 44.00 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.47 Total: -4.75 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -5.30 Total: -135.94 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.03 Total: -20.64 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -69.65 1.33 -68.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698878906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -69.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds