Wall clock time and date at job start Tue Mar 31 2020 23:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 C 1.53003 * 109.46740 * 119.99926 * 2 1 3 5 5 H 1.08996 * 109.46978 * 60.00337 * 4 2 1 6 6 C 1.53003 * 109.46903 * 179.97438 * 4 2 1 7 7 N 1.46503 * 109.46906 * 174.99784 * 6 4 2 8 8 C 1.34777 * 120.00071 * 180.02562 * 7 6 4 9 9 O 1.21622 * 119.99797 * 359.97438 * 8 7 6 10 10 C 1.47252 * 120.00366 * 180.02562 * 8 7 6 11 11 N 1.30556 * 125.54643 * 180.29806 * 10 8 7 12 12 C 1.30694 * 115.91018 * 180.19016 * 11 10 8 13 13 C 1.50698 * 122.11242 * 179.80487 * 12 11 10 14 14 C 1.53006 * 109.47184 * 254.71684 * 13 12 11 15 15 C 1.52997 * 109.47342 * 134.71460 * 13 12 11 16 16 C 1.52999 * 109.47150 * 14.71127 * 13 12 11 17 17 C 1.34237 * 115.78263 * 359.53724 * 12 11 10 18 18 S 1.71067 * 109.09148 * 0.24341 * 17 12 11 19 19 N 1.46497 * 109.47157 * 299.99921 * 4 2 1 20 20 C 1.36940 * 119.99886 * 85.00438 * 19 4 2 21 21 H 1.07995 * 120.00079 * 359.97438 * 20 19 4 22 22 C 1.38811 * 119.99929 * 179.97438 * 20 19 4 23 23 N 1.31618 * 119.99857 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47226 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47263 * 120.00317 * 24 22 20 27 27 H 1.48509 * 109.47349 * 239.99967 * 24 22 20 28 28 H 1.09005 * 109.47003 * 59.99947 * 1 2 3 29 29 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47131 * 299.99948 * 1 2 3 31 31 H 1.09004 * 109.47137 * 239.99597 * 2 1 3 32 32 H 1.08997 * 109.46893 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47120 * 299.99619 * 3 2 1 34 34 H 1.08998 * 109.47053 * 60.00004 * 3 2 1 35 35 H 1.09002 * 109.46929 * 55.00360 * 6 4 2 36 36 H 1.08990 * 109.47528 * 295.00189 * 6 4 2 37 37 H 0.97000 * 120.00051 * 0.02562 * 7 6 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 14 13 12 39 39 H 1.08993 * 109.46955 * 59.99842 * 14 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47140 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47230 * 299.99432 * 15 13 12 43 43 H 1.09001 * 109.47375 * 60.00270 * 15 13 12 44 44 H 1.09001 * 109.47362 * 300.00765 * 16 13 12 45 45 H 1.09002 * 109.46716 * 60.00124 * 16 13 12 46 46 H 1.09000 * 109.47486 * 180.02562 * 16 13 12 47 47 H 1.08005 * 125.45274 * 180.24720 * 17 12 11 48 48 H 0.97005 * 120.00418 * 264.99710 * 19 4 2 49 49 H 0.97003 * 119.99888 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2490 7 7 4.0583 -1.3055 2.5009 8 6 5.3833 -1.4096 2.7241 9 8 6.1737 -1.0194 1.8861 10 6 5.8742 -1.9968 3.9822 11 7 7.1287 -2.1446 4.3121 12 6 7.3520 -2.6938 5.4768 13 6 8.7465 -2.9344 5.9949 14 6 9.0779 -4.4248 5.8942 15 6 8.8312 -2.4908 7.4567 16 6 9.7464 -2.1322 5.1597 17 6 6.2608 -3.0250 6.1850 18 16 4.8645 -2.6074 5.2893 19 7 1.5516 -0.0306 2.4454 20 6 0.3100 -0.3211 2.9448 21 1 -0.3093 -1.0589 2.4566 22 6 -0.1525 0.3329 4.0784 23 7 0.6025 1.2318 4.6737 24 14 -1.8464 -0.0627 4.7592 25 1 -2.4899 -1.1000 3.9135 26 1 -1.7156 -0.5679 6.1495 27 1 -2.6808 1.1658 4.7555 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9336 0.3018 1.1593 36 1 3.9329 -1.3115 0.4073 37 1 3.4279 -1.6171 3.1691 38 1 8.3656 -4.9964 6.4893 39 1 9.0176 -4.7408 4.8529 40 1 10.0867 -4.5988 6.2685 41 1 9.8400 -2.6644 7.8312 42 1 8.5953 -1.4290 7.5284 43 1 8.1189 -3.0623 8.0518 44 1 9.6860 -2.4483 4.1182 45 1 9.5103 -1.0705 5.2314 46 1 10.7551 -2.3066 5.5341 47 1 6.2639 -3.4818 7.1637 48 1 2.1077 0.6323 2.8838 49 1 0.2794 1.6886 5.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698969137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:10 Heat of formation + Delta-G solvation = 0.971201 kcal Electronic energy + Delta-G solvation = -27661.145639 eV Core-core repulsion = 23942.863933 eV Total energy + Delta-G solvation = -3718.281706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51477 -39.25325 -37.34456 -36.05582 -34.00418 -32.95039 -30.53827 -30.07065 -28.48729 -27.48187 -27.40633 -26.38320 -25.70587 -23.86532 -22.82804 -21.60862 -20.20117 -19.10134 -18.81576 -17.98781 -17.29529 -16.70178 -15.85670 -15.54007 -15.43907 -14.99352 -14.47531 -14.33166 -14.12744 -14.04014 -13.62678 -13.49487 -13.31467 -13.08889 -13.02697 -12.45141 -12.32990 -12.26892 -12.24388 -11.92602 -11.81549 -11.34736 -11.11958 -11.08367 -11.06168 -10.96755 -10.90513 -10.84109 -10.62074 -10.29142 -10.22828 -10.13627 -9.92842 -9.67548 -9.55994 -9.49994 -8.97372 -8.89559 -8.64896 -7.06992 -5.85390 -3.14646 0.27396 1.21589 1.63542 2.37758 3.05247 3.36061 3.36270 3.43314 3.45192 4.21848 4.50542 4.60404 4.79974 4.81873 5.02153 5.08877 5.22019 5.31634 5.38486 5.39603 5.48223 5.51929 5.56755 5.70159 5.70594 5.73071 5.78803 5.79153 5.83572 5.87792 6.05112 6.08949 6.12520 6.18829 6.31798 6.31882 6.37410 6.50366 6.59107 6.65239 6.77050 6.83209 7.03329 7.31747 7.48782 7.64194 7.78903 8.30446 8.32342 9.43959 9.97746 10.33999 11.36171 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003133 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.139131 B = 8934.293866 C =10463.051614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.167 3.833 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.701 5.701 8 C 0.591 3.409 9 O -0.514 6.514 10 C -0.002 4.002 11 N -0.396 5.396 12 C 0.066 3.934 13 C 0.005 3.995 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.131 4.131 17 C -0.273 4.273 18 S 0.207 5.793 19 N -0.719 5.719 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.927 5.927 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.409 0.591 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.180 0.820 48 H 0.386 0.614 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.392 -9.672 2.058 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.056 3.944 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.354 5.354 8 C 0.372 3.628 9 O -0.389 6.389 10 C -0.278 4.278 11 N -0.111 5.111 12 C -0.073 4.073 13 C 0.002 3.998 14 C -0.195 4.195 15 C -0.198 4.198 16 C -0.188 4.188 17 C -0.414 4.414 18 S 0.463 5.537 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.198 0.802 48 H 0.220 0.780 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.033 -9.332 1.249 15.278 hybrid contribution -0.366 -0.199 1.376 1.437 sum 11.667 -9.531 2.624 15.292 Atomic orbital electron populations 1.21835 0.94940 1.00862 1.02124 1.21610 0.96851 0.96583 0.97804 1.21804 0.99723 0.96746 1.01733 1.20566 0.88976 0.96161 0.88675 0.92691 1.21890 0.96000 0.98781 0.84443 1.45792 1.05382 1.62254 1.21973 1.16685 0.83038 0.79277 0.83817 1.90815 1.55440 1.48166 1.44516 1.27530 0.91740 1.08091 1.00445 1.66443 1.17748 1.11920 1.15018 1.20159 0.96866 1.00263 0.89979 1.19181 0.88700 0.96518 0.95417 1.21884 1.01510 0.93749 1.02332 1.21934 1.02066 1.01761 0.93993 1.21722 0.96822 1.00034 1.00264 1.26523 0.96618 1.10836 1.07408 1.84329 1.08905 1.50969 1.09512 1.42454 1.18109 1.47494 1.28040 1.19229 0.92742 1.18091 1.06685 0.90837 1.24706 0.98171 0.99187 0.98489 1.69666 1.36697 1.29006 1.22137 0.86230 0.84415 0.77449 0.78753 1.20558 1.21965 1.21984 0.94983 0.94117 0.89339 0.93149 0.93609 0.94239 0.91211 0.90745 0.91344 0.75414 0.92531 0.92291 0.91862 0.91794 0.92220 0.92428 0.91558 0.92380 0.92776 0.80220 0.78013 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.26 37.16 0.31 -2.12 16 2 C -0.11 -1.74 2.80 -90.62 -0.25 -2.00 16 3 C -0.14 -2.35 8.69 37.16 0.32 -2.02 16 4 C 0.17 2.92 2.34 -67.93 -0.16 2.76 16 5 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.85 5.02 -4.04 -0.02 1.83 16 7 N -0.70 -11.73 5.38 -61.44 -0.33 -12.06 16 8 C 0.59 10.56 7.81 -12.60 -0.10 10.46 16 9 O -0.51 -10.62 17.07 5.26 0.09 -10.53 16 10 C 0.00 -0.03 7.46 -14.43 -0.11 -0.14 16 11 N -0.40 -6.34 9.52 -7.69 -0.07 -6.41 16 12 C 0.07 0.86 5.38 -84.49 -0.45 0.40 16 13 C 0.00 0.05 0.90 -155.66 -0.14 -0.09 16 14 C -0.14 -1.18 8.42 37.16 0.31 -0.87 16 15 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 16 C -0.13 -1.43 7.89 37.16 0.29 -1.13 16 17 C -0.27 -3.15 10.10 29.32 0.30 -2.85 16 18 S 0.21 2.71 22.31 -107.50 -2.40 0.32 16 19 N -0.72 -15.38 3.68 -53.43 -0.20 -15.58 16 20 C -0.24 -5.68 7.57 -15.06 -0.11 -5.80 16 21 H 0.07 1.74 7.39 -52.49 -0.39 1.36 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -25.65 13.06 55.49 0.72 -24.92 16 24 Si 0.90 20.82 29.55 -169.99 -5.02 15.79 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 35 H 0.07 1.29 6.17 -51.93 -0.32 0.97 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.41 6.82 7.28 -40.82 -0.30 6.52 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.42 7.07 -51.93 -0.37 0.06 16 44 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.18 1.54 7.23 -52.48 -0.38 1.16 16 48 H 0.39 9.13 7.80 -40.82 -0.32 8.81 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -28.79 403.08 -8.89 -37.67 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.15 Total: 12.42 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 0.39 Total: -2.77 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.12 Total: -58.97 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.40 Total: 0.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.79 -8.89 -37.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698969137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.646 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds