Wall clock time and date at job start Tue Mar 31 2020 23:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 C 1.53003 * 109.46740 * 119.99926 * 2 1 3 5 5 H 1.08996 * 109.46978 * 60.00337 * 4 2 1 6 6 C 1.53003 * 109.46903 * 179.97438 * 4 2 1 7 7 N 1.46503 * 109.46906 * 174.99784 * 6 4 2 8 8 C 1.34777 * 120.00071 * 180.02562 * 7 6 4 9 9 O 1.21622 * 119.99797 * 359.97438 * 8 7 6 10 10 C 1.47252 * 120.00366 * 180.02562 * 8 7 6 11 11 N 1.30556 * 125.54643 * 180.29806 * 10 8 7 12 12 C 1.30694 * 115.91018 * 180.19016 * 11 10 8 13 13 C 1.50698 * 122.11242 * 179.80487 * 12 11 10 14 14 C 1.53006 * 109.47184 * 254.71684 * 13 12 11 15 15 C 1.52997 * 109.47342 * 134.71460 * 13 12 11 16 16 C 1.52999 * 109.47150 * 14.71127 * 13 12 11 17 17 C 1.34237 * 115.78263 * 359.53724 * 12 11 10 18 18 S 1.71067 * 109.09148 * 0.24341 * 17 12 11 19 19 N 1.46497 * 109.47157 * 299.99921 * 4 2 1 20 20 C 1.36940 * 119.99886 * 85.00438 * 19 4 2 21 21 H 1.07995 * 120.00079 * 359.97438 * 20 19 4 22 22 C 1.38811 * 119.99929 * 179.97438 * 20 19 4 23 23 N 1.31618 * 119.99857 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47226 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47263 * 120.00317 * 24 22 20 27 27 H 1.48509 * 109.47349 * 239.99967 * 24 22 20 28 28 H 1.09005 * 109.47003 * 59.99947 * 1 2 3 29 29 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47131 * 299.99948 * 1 2 3 31 31 H 1.09004 * 109.47137 * 239.99597 * 2 1 3 32 32 H 1.08997 * 109.46893 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47120 * 299.99619 * 3 2 1 34 34 H 1.08998 * 109.47053 * 60.00004 * 3 2 1 35 35 H 1.09002 * 109.46929 * 55.00360 * 6 4 2 36 36 H 1.08990 * 109.47528 * 295.00189 * 6 4 2 37 37 H 0.97000 * 120.00051 * 0.02562 * 7 6 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 14 13 12 39 39 H 1.08993 * 109.46955 * 59.99842 * 14 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47140 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47230 * 299.99432 * 15 13 12 43 43 H 1.09001 * 109.47375 * 60.00270 * 15 13 12 44 44 H 1.09001 * 109.47362 * 300.00765 * 16 13 12 45 45 H 1.09002 * 109.46716 * 60.00124 * 16 13 12 46 46 H 1.09000 * 109.47486 * 180.02562 * 16 13 12 47 47 H 1.08005 * 125.45274 * 180.24720 * 17 12 11 48 48 H 0.97005 * 120.00418 * 264.99710 * 19 4 2 49 49 H 0.97003 * 119.99888 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2490 7 7 4.0583 -1.3055 2.5009 8 6 5.3833 -1.4096 2.7241 9 8 6.1737 -1.0194 1.8861 10 6 5.8742 -1.9968 3.9822 11 7 7.1287 -2.1446 4.3121 12 6 7.3520 -2.6938 5.4768 13 6 8.7465 -2.9344 5.9949 14 6 9.0779 -4.4248 5.8942 15 6 8.8312 -2.4908 7.4567 16 6 9.7464 -2.1322 5.1597 17 6 6.2608 -3.0250 6.1850 18 16 4.8645 -2.6074 5.2893 19 7 1.5516 -0.0306 2.4454 20 6 0.3100 -0.3211 2.9448 21 1 -0.3093 -1.0589 2.4566 22 6 -0.1525 0.3329 4.0784 23 7 0.6025 1.2318 4.6737 24 14 -1.8464 -0.0627 4.7592 25 1 -2.4899 -1.1000 3.9135 26 1 -1.7156 -0.5679 6.1495 27 1 -2.6808 1.1658 4.7555 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9336 0.3018 1.1593 36 1 3.9329 -1.3115 0.4073 37 1 3.4279 -1.6171 3.1691 38 1 8.3656 -4.9964 6.4893 39 1 9.0176 -4.7408 4.8529 40 1 10.0867 -4.5988 6.2685 41 1 9.8400 -2.6644 7.8312 42 1 8.5953 -1.4290 7.5284 43 1 8.1189 -3.0623 8.0518 44 1 9.6860 -2.4483 4.1182 45 1 9.5103 -1.0705 5.2314 46 1 10.7551 -2.3066 5.5341 47 1 6.2639 -3.4818 7.1637 48 1 2.1077 0.6323 2.8838 49 1 0.2794 1.6886 5.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698969137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:09 Heat of formation + Delta-G solvation = -16.578683 kcal Electronic energy + Delta-G solvation = -27661.906659 eV Core-core repulsion = 23942.863933 eV Total energy + Delta-G solvation = -3719.042726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59925 -40.57681 -38.81808 -36.94599 -35.45029 -34.71401 -32.04200 -31.33807 -29.87540 -28.37911 -28.12902 -27.73593 -26.87847 -25.52355 -24.16182 -22.86317 -21.47118 -20.29568 -20.03957 -19.30754 -18.87424 -17.91141 -17.19478 -16.92243 -16.53249 -16.31762 -15.97908 -15.56026 -15.47924 -15.08718 -14.81804 -14.75987 -14.54820 -14.46827 -14.32367 -13.82444 -13.40866 -13.25399 -13.04718 -12.99398 -12.90257 -12.80258 -12.65686 -12.56283 -12.40439 -12.13745 -11.91543 -11.90435 -11.89594 -11.87458 -11.75272 -11.54556 -11.33607 -11.15686 -10.83349 -10.74529 -10.72334 -10.23075 -9.75140 -8.91176 -7.82479 -5.08815 -0.83911 0.12352 0.60016 1.24750 1.51272 1.55032 1.61448 1.78826 2.09832 2.63316 3.21447 3.51525 3.66132 3.82601 3.90038 3.94680 4.05490 4.15526 4.25430 4.29256 4.30904 4.36168 4.43461 4.69281 4.74335 4.78039 4.78500 4.82486 4.89618 4.98206 4.99346 5.01767 5.02183 5.11286 5.16343 5.21905 5.27781 5.30906 5.33806 5.42317 5.44771 5.46350 5.62448 5.68056 5.86143 6.23700 6.37151 6.61411 6.95035 7.46004 8.16469 8.42058 9.40280 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003133 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.139131 B = 8934.293866 C =10463.051614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.169 3.831 5 H 0.062 0.938 6 C 0.118 3.882 7 N -0.697 5.697 8 C 0.591 3.409 9 O -0.553 6.553 10 C -0.045 4.045 11 N -0.417 5.417 12 C 0.048 3.952 13 C 0.003 3.997 14 C -0.133 4.133 15 C -0.137 4.137 16 C -0.128 4.128 17 C -0.250 4.250 18 S 0.232 5.768 19 N -0.723 5.723 20 C -0.209 4.209 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.952 3.048 25 H -0.267 1.267 26 H -0.299 1.299 27 H -0.306 1.306 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.038 0.962 46 H 0.078 0.922 47 H 0.217 0.783 48 H 0.373 0.627 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -11.809 2.497 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.060 3.940 5 H 0.080 0.920 6 C -0.006 4.006 7 N -0.348 5.348 8 C 0.374 3.626 9 O -0.431 6.431 10 C -0.319 4.319 11 N -0.134 5.134 12 C -0.090 4.090 13 C 0.000 4.000 14 C -0.191 4.191 15 C -0.194 4.194 16 C -0.186 4.186 17 C -0.391 4.391 18 S 0.487 5.513 19 N -0.363 5.363 20 C -0.341 4.341 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.784 3.216 25 H -0.191 1.191 26 H -0.227 1.227 27 H -0.234 1.234 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.234 0.766 48 H 0.205 0.795 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.296 -11.507 1.639 16.920 hybrid contribution -0.406 0.407 1.203 1.333 sum 11.890 -11.101 2.842 16.513 Atomic orbital electron populations 1.21751 0.95380 1.00974 1.01239 1.21578 0.96357 0.96510 0.98070 1.21731 1.00133 0.96695 1.00862 1.20716 0.89546 0.96031 0.87753 0.92032 1.21852 0.95069 0.98609 0.85040 1.45752 1.05179 1.61887 1.22026 1.16939 0.82860 0.78607 0.84193 1.90773 1.56209 1.50049 1.46069 1.27186 0.92658 1.10845 1.01167 1.66440 1.18154 1.12210 1.16604 1.20652 0.98700 1.00297 0.89379 1.19348 0.86770 0.97586 0.96299 1.21867 1.03138 0.92362 1.01690 1.21932 1.03820 1.01079 0.92608 1.21693 0.98615 0.98905 0.99385 1.26986 0.95243 1.08769 1.08117 1.84210 1.08907 1.49904 1.08285 1.42535 1.17228 1.47348 1.29176 1.19488 0.93126 1.16215 1.05298 0.90175 1.25267 1.00830 1.00205 0.99750 1.69804 1.38114 1.30963 1.22747 0.85373 0.81472 0.76791 0.77943 1.19111 1.22679 1.23432 0.93136 0.93435 0.92943 0.90091 0.92927 0.92529 0.94581 0.91795 0.89560 0.75359 0.91235 0.93938 0.89830 0.89853 0.93560 0.90812 0.93784 0.94319 0.90319 0.76585 0.79476 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.26 71.98 0.59 -3.84 16 2 C -0.10 -3.19 2.80 -10.79 -0.03 -3.22 16 3 C -0.14 -4.36 8.69 71.98 0.63 -3.74 16 4 C 0.17 5.70 2.34 44.99 0.11 5.81 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.81 5.02 86.38 0.43 4.25 16 7 N -0.70 -23.49 5.38 -466.54 -2.51 -26.00 16 8 C 0.59 21.72 7.81 86.61 0.68 22.39 16 9 O -0.55 -23.65 17.07 -4.10 -0.07 -23.72 16 10 C -0.04 -1.47 7.46 87.25 0.65 -0.82 16 11 N -0.42 -13.59 9.52 -178.25 -1.70 -15.29 16 12 C 0.05 1.20 5.38 41.81 0.22 1.42 16 13 C 0.00 0.05 0.90 -52.93 -0.05 0.00 16 14 C -0.13 -1.97 8.42 71.98 0.61 -1.36 16 15 C -0.14 -1.92 8.12 71.98 0.58 -1.33 16 16 C -0.13 -2.75 7.89 71.98 0.57 -2.18 16 17 C -0.25 -5.21 10.10 66.91 0.68 -4.53 16 18 S 0.23 5.86 22.31 -56.49 -1.26 4.60 16 19 N -0.72 -30.97 3.68 -322.94 -1.19 -32.15 16 20 C -0.21 -10.00 7.57 84.03 0.64 -9.36 16 21 H 0.08 3.69 7.39 -2.91 -0.02 3.67 16 22 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.96 -54.71 13.06 21.65 0.28 -54.43 16 24 Si 0.95 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 28 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 2.10 6.01 -2.39 -0.01 2.08 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.59 6.32 -2.39 -0.02 1.57 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.38 7.60 -2.39 -0.02 1.37 16 35 H 0.06 2.23 6.17 -2.39 -0.01 2.21 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.41 13.71 7.28 -92.71 -0.68 13.03 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.79 7.07 -2.39 -0.02 0.78 16 44 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 45 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.22 2.78 7.23 -2.91 -0.02 2.76 16 48 H 0.37 18.06 7.80 -92.70 -0.72 17.34 16 49 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -64.46 403.08 1.91 -62.55 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.44 Total: 38.88 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.77 Total: 0.40 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.11 Total: -127.87 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.07 Total: -23.72 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.26 Total: 4.60 kcal Total: -64.46 1.91 -62.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698969137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.966 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds