Wall clock time and date at job start Tue Mar 31 2020 23:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 172.19587 * 3 2 1 5 5 N 1.46893 * 109.47039 * 203.96381 * 4 3 2 6 6 C 1.46901 * 111.00075 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52232 * 204.99773 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.36950 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99753 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99298 * 21 19 17 23 23 H 1.48498 * 109.47245 * 209.99827 * 21 19 17 24 24 H 1.48501 * 109.47001 * 329.99938 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 1.09008 * 109.46564 * 163.84185 * 1 2 3 28 28 H 1.08991 * 109.47397 * 283.83813 * 1 2 3 29 29 H 1.09004 * 109.47491 * 43.84589 * 1 2 3 30 30 H 1.08994 * 109.47035 * 83.95992 * 4 3 2 31 31 H 1.09002 * 109.46627 * 323.96302 * 4 3 2 32 32 H 1.00905 * 110.99849 * 303.95219 * 5 4 3 33 33 H 1.09006 * 109.52072 * 325.11887 * 6 5 4 34 34 H 1.09006 * 109.50431 * 62.43414 * 7 6 5 35 35 H 1.08996 * 109.50401 * 302.31288 * 7 6 5 36 36 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 37 37 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 38 38 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 39 39 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 40 40 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 41 41 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 42 42 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 43 43 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 44 44 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 45 45 H 0.96998 * 119.99664 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 47 47 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 48 48 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 49 49 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0001 5 7 4.6065 1.2678 0.5624 6 6 6.0750 1.3052 0.5777 7 6 6.5510 2.2652 1.6715 8 6 8.0791 2.3451 1.6436 9 7 8.5217 2.8181 0.3256 10 6 9.9737 3.0394 0.3062 11 6 10.4326 3.2873 -1.1323 12 7 11.8809 3.5074 -1.1517 13 6 12.5104 3.7467 -2.3191 14 8 11.8780 3.7803 -3.3534 15 6 14.0001 3.9737 -2.3392 16 16 14.5429 4.2668 -4.0408 17 6 16.2702 4.4935 -3.7762 18 1 16.6763 4.4308 -2.7775 19 6 17.1088 4.7526 -4.8514 20 7 18.3991 4.9224 -4.6537 21 14 16.4063 4.8617 -6.5789 22 1 16.0141 6.2649 -6.8660 23 1 17.4323 4.4240 -7.5591 24 1 15.2139 3.9830 -6.6847 25 6 8.1168 1.8877 -0.7358 26 6 6.5899 1.7940 -0.7789 27 1 -0.3633 -0.9872 -0.2860 28 1 -0.3634 0.2458 0.9977 29 1 -0.3634 0.7412 -0.7119 30 1 4.4813 -0.1060 -1.0220 31 1 4.4820 -0.8289 0.6045 32 1 4.2303 2.0566 0.0580 33 1 6.4628 0.3060 0.7760 34 1 6.2236 1.8992 2.6446 35 1 6.1315 3.2554 1.4944 36 1 8.4981 1.3572 1.8344 37 1 8.4204 3.0390 2.4119 38 1 10.4807 2.1598 0.7027 39 1 10.2174 3.9067 0.9198 40 1 10.1890 2.4200 -1.7459 41 1 9.9257 4.1669 -1.5288 42 1 12.3866 3.4809 -0.3245 43 1 14.2437 4.8413 -1.7260 44 1 14.5070 3.0942 -1.9422 45 1 18.9851 5.1039 -5.4051 46 1 8.4857 2.2492 -1.6957 47 1 8.5357 0.9019 -0.5339 48 1 6.2902 1.0915 -1.5565 49 1 6.1710 2.7770 -0.9945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699992632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:49 Heat of formation + Delta-G solvation = 10.738380 kcal Electronic energy + Delta-G solvation = -25429.663320 eV Core-core repulsion = 21711.805151 eV Total energy + Delta-G solvation = -3717.858169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.01517 -39.16314 -37.14123 -35.10494 -34.18153 -32.44906 -32.31412 -31.31475 -30.14942 -29.05202 -27.44418 -25.64650 -25.38943 -24.09453 -23.07329 -21.55126 -20.56416 -20.37374 -17.88041 -17.53915 -16.73712 -16.25678 -16.06883 -15.88157 -15.61366 -15.32946 -15.12014 -14.95538 -14.66617 -14.61514 -14.14223 -14.11198 -13.92009 -13.72870 -13.61246 -13.27473 -13.22482 -13.09138 -12.80238 -12.47964 -12.33956 -12.05572 -11.66310 -11.61799 -11.45682 -11.27192 -11.01433 -10.97991 -10.96400 -10.61483 -10.33025 -10.21253 -9.86801 -9.57101 -9.04140 -8.98769 -8.89233 -8.71750 -8.51101 -6.92780 -6.29730 -4.01586 2.17969 2.31244 2.71262 2.95507 3.16938 3.32722 3.49698 3.52016 3.62334 3.80137 3.96234 4.32221 4.32905 4.34950 4.54313 4.63787 4.72602 4.79469 4.83622 4.88104 4.93726 4.98146 5.07160 5.09461 5.10793 5.12316 5.16010 5.18531 5.20372 5.27876 5.30485 5.43331 5.47769 5.51105 5.60404 5.67527 5.72321 5.76947 5.79540 5.87832 5.99938 6.43386 6.47354 6.64505 6.67522 6.83007 7.23608 7.56955 7.93391 8.40787 8.46346 9.16540 10.79547 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.001456 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.143235 B =19226.298630 C =20109.048409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.178 4.178 3 C -0.189 4.189 4 C 0.173 3.827 5 N -0.681 5.681 6 C 0.086 3.914 7 C -0.102 4.102 8 C 0.056 3.944 9 N -0.533 5.533 10 C 0.046 3.954 11 C 0.118 3.882 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.048 3.952 26 C -0.147 4.147 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.347 0.653 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.066 0.934 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.672 -9.630 15.471 35.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.180 4.180 3 C -0.189 4.189 4 C 0.045 3.955 5 N -0.311 5.311 6 C -0.024 4.024 7 C -0.140 4.140 8 C -0.072 4.072 9 N -0.258 5.258 10 C -0.082 4.082 11 C -0.007 4.007 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.080 4.080 26 C -0.186 4.186 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.165 0.835 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.233 0.767 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -31.839 -9.317 14.232 36.098 hybrid contribution 1.613 -0.593 0.067 1.720 sum -30.226 -9.910 14.299 34.875 Atomic orbital electron populations 1.18880 0.84611 1.03064 1.03181 1.22454 0.93938 0.99861 1.01727 1.22110 0.93366 1.02298 1.01147 1.18805 0.84279 0.93668 0.98751 1.60593 1.07644 1.03920 1.58969 1.21688 0.86380 0.99663 0.94641 1.21534 0.93780 1.00146 0.98574 1.22117 0.95707 0.98748 0.90615 1.61944 1.12523 1.47137 1.04214 1.22264 0.87686 1.01397 0.96900 1.21405 0.80969 1.02320 0.95980 1.45885 1.08211 1.75212 1.09900 1.20271 0.89468 0.75513 0.83025 1.90701 1.67502 1.49014 1.32104 1.23276 0.93573 1.05503 1.05109 1.84795 1.08883 1.93857 1.04016 1.22321 0.89710 1.56349 0.98571 0.89377 1.24707 0.94117 0.93231 0.99184 1.69941 1.03070 1.46359 1.32347 0.86737 0.80737 0.80500 0.83898 1.19178 1.19923 1.15943 1.22202 0.95284 0.94354 0.96160 1.22335 0.96026 1.02340 0.97888 0.90159 0.90073 0.90132 0.92733 0.88883 0.83453 0.90498 0.90712 0.90777 0.94705 0.90221 0.94047 0.89719 0.91416 0.90652 0.76703 0.88423 0.88458 0.91933 0.89436 0.94602 0.91539 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.18 10.32 34.37 0.35 0.18 16 2 C -0.18 -1.43 14.13 -37.12 -0.52 -1.95 16 3 C -0.19 -1.59 13.60 -37.12 -0.50 -2.10 16 4 C 0.17 1.14 5.96 -6.61 -0.04 1.10 16 5 N -0.68 -4.54 6.23 -109.68 -0.68 -5.22 16 6 C 0.09 0.53 2.53 -67.59 -0.17 0.36 16 7 C -0.10 -0.64 5.70 -26.65 -0.15 -0.79 16 8 C 0.06 0.37 5.42 -3.83 -0.02 0.35 16 9 N -0.53 -4.20 4.81 -234.67 -1.13 -5.33 16 10 C 0.05 0.36 5.39 -3.82 -0.02 0.34 16 11 C 0.12 1.28 4.92 -4.04 -0.02 1.26 16 12 N -0.74 -9.09 5.56 -60.29 -0.33 -9.43 16 13 C 0.53 9.33 7.85 -10.98 -0.09 9.24 16 14 O -0.52 -11.16 15.86 5.56 0.09 -11.07 16 15 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 16 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.70 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 21 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C 0.05 0.38 4.85 -3.84 -0.02 0.36 16 26 C -0.15 -0.97 5.35 -26.65 -0.14 -1.11 16 27 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.32 7.51 -51.93 -0.39 -0.07 16 31 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.35 2.28 8.43 -39.29 -0.33 1.95 16 33 H 0.08 0.48 7.80 -51.93 -0.41 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.79 6.21 -51.93 -0.32 0.47 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 43 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 0.78 5.81 -51.93 -0.30 0.48 16 47 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.41 7.55 -51.93 -0.39 0.02 16 49 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 411.43 15.07 6.20 6.20 Total: -1.00 -34.58 411.43 -11.10 -45.68 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.40 Total: 0.38 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.91 Total: -6.90 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -1.37 Total: -45.76 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.58 -11.10 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.418 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds