Wall clock time and date at job start Tue Mar 31 2020 23:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 172.19587 * 3 2 1 5 5 N 1.46893 * 109.47039 * 203.96381 * 4 3 2 6 6 C 1.46901 * 111.00075 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52232 * 204.99773 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.36950 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99753 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99298 * 21 19 17 23 23 H 1.48498 * 109.47245 * 209.99827 * 21 19 17 24 24 H 1.48501 * 109.47001 * 329.99938 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 1.09008 * 109.46564 * 163.84185 * 1 2 3 28 28 H 1.08991 * 109.47397 * 283.83813 * 1 2 3 29 29 H 1.09004 * 109.47491 * 43.84589 * 1 2 3 30 30 H 1.08994 * 109.47035 * 83.95992 * 4 3 2 31 31 H 1.09002 * 109.46627 * 323.96302 * 4 3 2 32 32 H 1.00905 * 110.99849 * 303.95219 * 5 4 3 33 33 H 1.09006 * 109.52072 * 325.11887 * 6 5 4 34 34 H 1.09006 * 109.50431 * 62.43414 * 7 6 5 35 35 H 1.08996 * 109.50401 * 302.31288 * 7 6 5 36 36 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 37 37 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 38 38 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 39 39 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 40 40 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 41 41 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 42 42 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 43 43 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 44 44 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 45 45 H 0.96998 * 119.99664 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 47 47 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 48 48 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 49 49 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0001 5 7 4.6065 1.2678 0.5624 6 6 6.0750 1.3052 0.5777 7 6 6.5510 2.2652 1.6715 8 6 8.0791 2.3451 1.6436 9 7 8.5217 2.8181 0.3256 10 6 9.9737 3.0394 0.3062 11 6 10.4326 3.2873 -1.1323 12 7 11.8809 3.5074 -1.1517 13 6 12.5104 3.7467 -2.3191 14 8 11.8780 3.7803 -3.3534 15 6 14.0001 3.9737 -2.3392 16 16 14.5429 4.2668 -4.0408 17 6 16.2702 4.4935 -3.7762 18 1 16.6763 4.4308 -2.7775 19 6 17.1088 4.7526 -4.8514 20 7 18.3991 4.9224 -4.6537 21 14 16.4063 4.8617 -6.5789 22 1 16.0141 6.2649 -6.8660 23 1 17.4323 4.4240 -7.5591 24 1 15.2139 3.9830 -6.6847 25 6 8.1168 1.8877 -0.7358 26 6 6.5899 1.7940 -0.7789 27 1 -0.3633 -0.9872 -0.2860 28 1 -0.3634 0.2458 0.9977 29 1 -0.3634 0.7412 -0.7119 30 1 4.4813 -0.1060 -1.0220 31 1 4.4820 -0.8289 0.6045 32 1 4.2303 2.0566 0.0580 33 1 6.4628 0.3060 0.7760 34 1 6.2236 1.8992 2.6446 35 1 6.1315 3.2554 1.4944 36 1 8.4981 1.3572 1.8344 37 1 8.4204 3.0390 2.4119 38 1 10.4807 2.1598 0.7027 39 1 10.2174 3.9067 0.9198 40 1 10.1890 2.4200 -1.7459 41 1 9.9257 4.1669 -1.5288 42 1 12.3866 3.4809 -0.3245 43 1 14.2437 4.8413 -1.7260 44 1 14.5070 3.0942 -1.9422 45 1 18.9851 5.1039 -5.4051 46 1 8.4857 2.2492 -1.6957 47 1 8.5357 0.9019 -0.5339 48 1 6.2902 1.0915 -1.5565 49 1 6.1710 2.7770 -0.9945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699992632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:48 Heat of formation + Delta-G solvation = -14.748595 kcal Electronic energy + Delta-G solvation = -25430.768519 eV Core-core repulsion = 21711.805151 eV Total energy + Delta-G solvation = -3718.963367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86926 -40.23583 -37.77887 -36.02023 -34.88449 -34.67137 -33.01680 -31.87078 -31.33044 -29.72101 -28.31019 -27.80745 -25.99584 -24.70925 -23.66196 -22.24847 -21.86494 -20.95266 -19.88272 -18.13579 -17.88543 -17.42122 -17.06889 -16.93511 -16.70278 -16.33557 -16.05121 -15.85524 -15.66486 -15.44962 -15.13732 -14.94693 -14.77986 -14.64621 -14.40928 -14.38585 -14.09476 -13.81631 -13.70359 -13.54574 -13.34700 -13.04859 -13.02307 -12.82162 -12.63725 -12.48783 -12.19360 -12.03924 -11.86667 -11.56526 -11.49099 -11.17265 -11.06070 -10.85377 -10.73618 -10.53751 -10.16597 -9.42023 -9.30238 -8.99922 -8.51800 -6.22638 0.98400 1.31365 1.46382 1.54518 1.55156 1.61397 1.74198 2.13728 2.25154 2.69577 2.86734 3.00614 3.13624 3.47306 3.69597 3.79210 3.88276 3.93937 4.05841 4.10915 4.24219 4.28688 4.37167 4.43561 4.45712 4.47279 4.47917 4.58286 4.59982 4.75433 4.78829 4.81052 4.84465 4.88425 4.90118 4.93064 4.98851 5.07141 5.08483 5.20597 5.34623 5.36951 5.70653 5.96689 6.02521 6.09260 6.11412 6.31092 6.44530 6.68172 6.93668 7.17308 8.60654 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.001456 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.143235 B =19226.298630 C =20109.048409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.191 4.191 3 C -0.220 4.220 4 C 0.174 3.826 5 N -0.685 5.685 6 C 0.092 3.908 7 C -0.097 4.097 8 C 0.058 3.942 9 N -0.542 5.542 10 C 0.055 3.945 11 C 0.121 3.879 12 N -0.711 5.711 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.111 4.111 16 S -0.177 6.177 17 C -0.529 4.529 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 C 0.049 3.951 26 C -0.140 4.140 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.346 0.654 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.418 0.582 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.277 0.723 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.218 -10.215 16.577 37.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.192 4.192 3 C -0.221 4.221 4 C 0.046 3.954 5 N -0.315 5.315 6 C -0.018 4.018 7 C -0.135 4.135 8 C -0.069 4.069 9 N -0.268 5.268 10 C -0.073 4.073 11 C -0.003 4.003 12 N -0.365 5.365 13 C 0.321 3.679 14 O -0.442 6.442 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.079 4.079 26 C -0.180 4.180 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.255 0.745 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.388 -9.912 15.404 38.083 hybrid contribution 2.000 -0.435 -0.111 2.050 sum -31.388 -10.348 15.293 36.416 Atomic orbital electron populations 1.19093 0.82524 1.04250 1.04212 1.23384 0.95257 0.99324 1.01242 1.22682 0.94339 1.03111 1.01920 1.18848 0.83586 0.93731 0.99200 1.60602 1.07847 1.03971 1.59052 1.21637 0.86094 0.99773 0.94257 1.21483 0.93719 0.99624 0.98720 1.22144 0.95661 0.99224 0.89919 1.61958 1.12374 1.47511 1.04932 1.22177 0.87938 1.02477 0.94679 1.21459 0.79429 1.01373 0.98069 1.45623 1.09022 1.72809 1.09078 1.19960 0.88623 0.75562 0.83780 1.90693 1.68020 1.51520 1.33941 1.23266 0.95020 1.07117 1.00767 1.84735 1.06459 1.94110 1.09793 1.22469 0.91764 1.55862 0.97592 0.91857 1.25541 0.94434 0.92956 1.02883 1.70017 1.04267 1.47446 1.33800 0.85882 0.80264 0.80586 0.79742 1.18710 1.18307 1.16119 1.22163 0.95897 0.94348 0.95533 1.22270 0.95274 1.02011 0.98399 0.88810 0.88989 0.89004 0.92148 0.88328 0.83570 0.90140 0.90301 0.91663 0.94147 0.89358 0.92758 0.88543 0.92070 0.92128 0.74490 0.86673 0.86650 0.91362 0.90917 0.94324 0.91189 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.33 10.32 70.18 0.72 0.39 16 2 C -0.19 -2.94 14.13 31.12 0.44 -2.50 16 3 C -0.22 -3.65 13.60 31.13 0.42 -3.23 16 4 C 0.17 2.19 5.96 84.50 0.50 2.69 16 5 N -0.68 -8.60 6.23 -500.93 -3.12 -11.72 16 6 C 0.09 1.02 2.53 44.99 0.11 1.13 16 7 C -0.10 -1.06 5.70 30.65 0.17 -0.89 16 8 C 0.06 0.63 5.42 86.33 0.47 1.10 16 9 N -0.54 -7.55 4.81 -896.35 -4.31 -11.85 16 10 C 0.06 0.74 5.39 86.31 0.46 1.21 16 11 C 0.12 2.43 4.92 86.38 0.43 2.86 16 12 N -0.71 -15.91 5.56 -463.05 -2.57 -18.49 16 13 C 0.54 18.01 7.85 87.66 0.69 18.70 16 14 O -0.56 -23.97 15.86 -3.03 -0.05 -24.01 16 15 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 16 S -0.18 -8.93 18.55 -56.49 -1.05 -9.97 16 17 C -0.53 -30.68 10.04 67.95 0.68 -30.00 16 18 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.77 5.50 84.86 0.47 3.23 16 20 N -0.92 -55.74 13.97 21.65 0.30 -55.43 16 21 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 22 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 25 C 0.05 0.71 4.85 86.33 0.42 1.13 16 26 C -0.14 -1.73 5.35 30.64 0.16 -1.57 16 27 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 31 H 0.10 1.09 8.06 -2.39 -0.02 1.07 16 32 H 0.35 4.41 8.43 -89.69 -0.76 3.66 16 33 H 0.08 0.86 7.80 -2.38 -0.02 0.84 16 34 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.09 0.82 8.12 -2.38 -0.02 0.80 16 38 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.37 6.21 -2.39 -0.01 1.35 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 6.40 8.47 -92.71 -0.79 5.61 16 43 H 0.12 3.85 8.14 -2.40 -0.02 3.84 16 44 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 45 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.07 1.26 5.81 -2.39 -0.01 1.25 16 47 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 48 H 0.07 0.81 7.55 -2.39 -0.02 0.79 16 49 H 0.07 0.97 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -75.00 411.43 -2.92 -77.92 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.63 Total: 16.11 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 6.60 Total: -9.37 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -9.70 Total: -97.50 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.97 kcal Total: -75.00 -2.92 -77.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.169 kcal (2) G-P(sol) polarization free energy of solvation -74.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds