Wall clock time and date at job start Tue Mar 31 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30939 * 122.90328 * 2 1 4 4 C 1.29429 * 117.35986 * 179.97438 * 3 2 1 5 5 C 1.50707 * 124.80027 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47002 * 60.02708 * 5 4 3 7 7 C 1.52995 * 109.47080 * 300.02560 * 5 4 3 8 8 S 1.70946 * 110.39419 * 0.24399 * 4 3 2 9 9 C 1.35658 * 122.90101 * 179.97438 * 2 1 3 10 10 C 1.46687 * 126.13350 * 0.03944 * 9 2 1 11 11 O 1.21684 * 120.00128 * 351.81564 * 10 9 2 12 12 N 1.34778 * 119.99552 * 171.81723 * 10 9 2 13 13 C 1.46496 * 120.00640 * 0.16282 * 12 10 9 14 14 C 1.46506 * 119.99453 * 180.16614 * 12 10 9 15 15 C 1.52999 * 109.47034 * 89.99610 * 14 12 10 16 16 C 1.53005 * 109.46921 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.47134 * 180.02562 * 16 15 14 18 18 C 1.46497 * 120.00360 * 90.00242 * 17 16 15 19 19 C 1.36937 * 119.99873 * 270.00400 * 17 16 15 20 20 H 1.08001 * 120.00660 * 31.17856 * 19 17 16 21 21 C 1.38811 * 119.99992 * 211.18526 * 19 17 16 22 22 N 1.31621 * 119.99917 * 6.90311 * 21 19 17 23 23 Si 1.86799 * 120.00223 * 186.90725 * 21 19 17 24 24 H 1.48500 * 109.47152 * 59.99553 * 23 21 19 25 25 H 1.48503 * 109.47380 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47029 * 299.99722 * 23 21 19 27 27 H 1.09006 * 109.46650 * 90.02539 * 1 2 3 28 28 H 1.08997 * 109.47117 * 210.02405 * 1 2 3 29 29 H 1.08991 * 109.47037 * 330.02583 * 1 2 3 30 30 H 1.08999 * 109.46920 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46875 * 299.99528 * 6 5 4 32 32 H 1.09004 * 109.47044 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.47201 * 59.99822 * 6 5 4 34 34 H 1.09004 * 109.46843 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.47082 * 299.99850 * 7 5 4 36 36 H 1.08999 * 109.47136 * 60.00390 * 7 5 4 37 37 H 1.08996 * 109.47056 * 83.26823 * 13 12 10 38 38 H 1.09002 * 109.47288 * 203.27319 * 13 12 10 39 39 H 1.08999 * 109.46770 * 323.27141 * 13 12 10 40 40 H 1.09001 * 109.46964 * 209.99611 * 14 12 10 41 41 H 1.08994 * 109.47093 * 329.99809 * 14 12 10 42 42 H 1.08992 * 109.47325 * 300.00081 * 15 14 12 43 43 H 1.09006 * 109.47247 * 60.00429 * 15 14 12 44 44 H 1.09001 * 109.47244 * 300.00103 * 16 15 14 45 45 H 1.08994 * 109.46926 * 60.00370 * 16 15 14 46 46 H 1.09001 * 109.47412 * 85.29506 * 18 17 16 47 47 H 1.09005 * 109.47387 * 205.30073 * 18 17 16 48 48 H 1.09006 * 109.47021 * 325.29135 * 18 17 16 49 49 H 0.97005 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2627 2.9791 1.2490 7 6 4.2627 2.9781 -1.2495 8 16 3.9447 -0.6780 -0.0057 9 6 2.2439 -1.1390 0.0005 10 6 1.7191 -2.5088 0.0003 11 8 0.5273 -2.7037 0.1496 12 7 2.5570 -3.5514 -0.1653 13 6 3.9923 -3.3169 -0.3415 14 6 2.0323 -4.9192 -0.1691 15 6 1.6619 -5.3193 -1.5987 16 6 1.1145 -6.7481 -1.6027 17 7 0.7604 -7.1315 -2.9716 18 6 1.7565 -7.7722 -3.8338 19 6 -0.5018 -6.8909 -3.4452 20 1 -1.0596 -6.0383 -3.0871 21 6 -1.0643 -7.7430 -4.3856 22 7 -0.4439 -8.8541 -4.7214 23 14 -2.7018 -7.3126 -5.1747 24 1 -2.5810 -6.0174 -5.8910 25 1 -3.0827 -8.3775 -6.1372 26 1 -3.7441 -7.2011 -4.1228 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8901 0.5134 30 1 5.5007 1.7346 0.0002 31 1 3.2442 3.3675 1.2488 32 1 4.9686 3.8096 1.2489 33 1 4.4191 2.3698 2.1393 34 1 4.9686 3.8086 -1.2500 35 1 4.4191 2.3681 -2.1392 36 1 3.2442 3.3665 -1.2496 37 1 4.4627 -3.1938 0.6340 38 1 4.4391 -4.1680 -0.8556 39 1 4.1429 -2.4146 -0.9340 40 1 2.7919 -5.6008 0.2137 41 1 1.1462 -4.9702 0.4636 42 1 0.9024 -4.6378 -1.9815 43 1 2.5480 -5.2684 -2.2314 44 1 1.8744 -7.4294 -1.2200 45 1 0.2285 -6.7995 -0.9700 46 1 1.7590 -8.8466 -3.6499 47 1 1.5086 -7.5829 -4.8783 48 1 2.7431 -7.3637 -3.6149 49 1 -0.8371 -9.4498 -5.3783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700203287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:34 Heat of formation + Delta-G solvation = 22.537423 kcal Electronic energy + Delta-G solvation = -27237.627579 eV Core-core repulsion = 23520.281055 eV Total energy + Delta-G solvation = -3717.346524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57508 -39.49880 -36.38449 -35.83763 -35.35645 -32.49160 -31.31217 -30.32942 -28.44432 -27.57477 -27.27738 -25.85761 -25.52039 -25.08964 -22.65470 -21.41435 -20.69248 -20.16839 -18.68809 -18.09999 -16.87903 -16.61174 -16.11816 -15.91493 -15.44969 -14.89853 -14.76823 -14.50149 -14.23466 -13.98064 -13.72889 -13.64335 -13.33810 -13.17921 -13.03332 -12.80566 -12.65064 -12.63111 -12.42999 -12.25985 -11.92631 -11.76160 -11.57656 -11.52527 -11.40222 -11.28159 -10.91219 -10.78312 -10.72617 -10.41652 -10.16962 -9.95075 -9.88399 -9.69359 -9.68050 -9.54139 -9.04086 -8.61194 -8.42830 -6.55710 -5.69975 -3.21416 0.08451 0.99113 1.38692 2.30649 2.86663 3.11936 3.43386 3.47137 3.49743 3.68411 4.37912 4.40452 4.54844 4.57557 4.63939 4.76225 4.94946 5.01656 5.03735 5.24525 5.31166 5.35716 5.37213 5.43059 5.45839 5.48502 5.50156 5.63196 5.67802 5.77716 5.78652 5.81746 5.90695 6.02264 6.09592 6.13830 6.29239 6.49834 6.59072 6.81550 6.87615 7.07099 7.23007 7.39365 7.50273 7.71338 7.87935 8.06988 8.52436 9.31236 9.92161 10.45500 11.36669 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002396 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.942568 B =11683.709263 C =12281.741684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.153 3.847 3 N -0.476 5.476 4 C 0.040 3.960 5 C -0.019 4.019 6 C -0.140 4.140 7 C -0.141 4.141 8 S 0.177 5.823 9 C -0.302 4.302 10 C 0.593 3.407 11 O -0.516 6.516 12 N -0.608 5.608 13 C 0.066 3.934 14 C 0.119 3.881 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.601 5.601 18 C 0.164 3.836 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.006 3.994 22 N -0.908 5.908 23 Si 0.904 3.096 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.050 0.950 48 H -0.009 1.009 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.593 21.142 12.393 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 N -0.191 5.191 4 C -0.235 4.235 5 C -0.041 4.041 6 C -0.198 4.198 7 C -0.200 4.200 8 S 0.438 5.562 9 C -0.425 4.425 10 C 0.380 3.620 11 O -0.393 6.393 12 N -0.341 5.341 13 C -0.080 4.080 14 C -0.003 4.003 15 C -0.193 4.193 16 C 0.027 3.973 17 N -0.323 5.323 18 C 0.019 3.981 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.068 0.932 48 H 0.010 0.990 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.698 20.845 12.330 28.862 hybrid contribution -1.534 0.205 -0.668 1.685 sum 14.164 21.050 11.662 27.924 Atomic orbital electron populations 1.20719 0.86020 1.04661 1.03859 1.20653 0.98597 0.85047 0.94172 1.66056 1.04557 1.31449 1.16999 1.27889 0.94787 1.00808 0.99989 1.19888 0.94962 0.91276 0.97934 1.21802 1.03152 0.99205 0.95683 1.21812 1.03160 0.99251 0.95742 1.84257 1.05857 0.99407 1.66712 1.25453 0.95795 0.99200 1.22092 1.16738 0.85891 0.82341 0.77028 1.90802 1.14447 1.84332 1.49755 1.47755 1.07240 1.07231 1.71848 1.22008 0.81494 1.02499 1.01959 1.21673 0.99819 0.79290 0.99501 1.22616 1.01205 1.01428 0.94013 1.20633 0.97491 0.91172 0.87994 1.43784 1.09828 1.70731 1.07980 1.20725 0.87102 0.95163 0.95126 1.19109 0.91675 1.06036 1.21731 0.91870 1.25223 0.97875 0.95155 1.01034 1.70012 1.39096 1.11387 1.34746 0.86349 0.83983 0.77300 0.78982 1.21002 1.21620 1.20762 0.90097 0.87795 0.90852 0.89272 0.91356 0.91554 0.92530 0.91558 0.92452 0.91338 0.91708 0.88746 0.91153 0.90573 0.89575 0.91714 0.92934 0.94814 0.93312 0.96299 0.93167 0.99017 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.80 36.01 0.35 -0.84 16 2 C 0.15 2.05 6.79 -83.89 -0.57 1.49 16 3 N -0.48 -5.86 10.48 -7.70 -0.08 -5.94 16 4 C 0.04 0.40 5.90 -13.29 -0.08 0.32 16 5 C -0.02 -0.13 3.35 -91.77 -0.31 -0.44 16 6 C -0.14 -0.87 9.17 37.16 0.34 -0.53 16 7 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 8 S 0.18 1.64 18.08 -107.50 -1.94 -0.30 16 9 C -0.30 -4.00 6.25 -37.09 -0.23 -4.23 16 10 C 0.59 9.10 7.63 -12.85 -0.10 9.01 16 11 O -0.52 -9.48 13.84 5.20 0.07 -9.41 16 12 N -0.61 -8.13 2.87 -183.13 -0.53 -8.66 16 13 C 0.07 0.61 8.94 59.84 0.54 1.15 16 14 C 0.12 1.71 5.38 -4.04 -0.02 1.69 16 15 C -0.15 -2.73 5.86 -26.73 -0.16 -2.89 16 16 C 0.16 3.26 5.69 -4.04 -0.02 3.24 16 17 N -0.60 -15.68 2.90 -181.12 -0.52 -16.20 16 18 C 0.16 4.12 8.99 59.85 0.54 4.66 16 19 C -0.26 -7.33 9.58 -15.06 -0.14 -7.47 16 20 H 0.06 1.81 7.84 -52.49 -0.41 1.40 16 21 C 0.01 0.16 5.14 -17.43 -0.09 0.07 16 22 N -0.91 -27.18 10.97 55.49 0.61 -26.57 16 23 Si 0.90 22.60 29.56 -169.99 -5.02 17.58 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.48 5.86 -51.93 -0.30 1.17 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.48 7.80 -51.93 -0.41 0.08 16 38 H 0.09 0.77 8.02 -51.93 -0.42 0.36 16 39 H 0.07 0.64 4.63 -23.74 -0.11 0.53 16 40 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.09 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.64 8.07 -51.93 -0.42 0.23 16 45 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 46 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 47 H 0.05 1.36 7.09 -51.93 -0.37 0.99 16 48 H -0.01 -0.19 8.11 -51.93 -0.42 -0.61 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -33.95 404.22 -9.20 -43.15 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -8.26 Total: -4.38 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 0.39 Total: 4.64 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.52 Total: -57.37 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.94 Total: -0.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.95 -9.20 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700203287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.692 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds