Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30939 * 122.90328 * 2 1 4 4 C 1.29429 * 117.35986 * 179.97438 * 3 2 1 5 5 C 1.50707 * 124.80027 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47002 * 60.02708 * 5 4 3 7 7 C 1.52995 * 109.47080 * 300.02560 * 5 4 3 8 8 S 1.70946 * 110.39419 * 0.24399 * 4 3 2 9 9 C 1.35658 * 122.90101 * 179.97438 * 2 1 3 10 10 C 1.46687 * 126.13350 * 0.03944 * 9 2 1 11 11 O 1.21684 * 120.00128 * 351.81564 * 10 9 2 12 12 N 1.34778 * 119.99552 * 171.81723 * 10 9 2 13 13 C 1.46496 * 120.00640 * 0.16282 * 12 10 9 14 14 C 1.46506 * 119.99453 * 180.16614 * 12 10 9 15 15 C 1.52999 * 109.47034 * 89.99610 * 14 12 10 16 16 C 1.53005 * 109.46921 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.47134 * 180.02562 * 16 15 14 18 18 C 1.46497 * 120.00360 * 90.00242 * 17 16 15 19 19 C 1.36937 * 119.99873 * 270.00400 * 17 16 15 20 20 H 1.08001 * 120.00660 * 31.17856 * 19 17 16 21 21 C 1.38811 * 119.99992 * 211.18526 * 19 17 16 22 22 N 1.31621 * 119.99917 * 6.90311 * 21 19 17 23 23 Si 1.86799 * 120.00223 * 186.90725 * 21 19 17 24 24 H 1.48500 * 109.47152 * 59.99553 * 23 21 19 25 25 H 1.48503 * 109.47380 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47029 * 299.99722 * 23 21 19 27 27 H 1.09006 * 109.46650 * 90.02539 * 1 2 3 28 28 H 1.08997 * 109.47117 * 210.02405 * 1 2 3 29 29 H 1.08991 * 109.47037 * 330.02583 * 1 2 3 30 30 H 1.08999 * 109.46920 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46875 * 299.99528 * 6 5 4 32 32 H 1.09004 * 109.47044 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.47201 * 59.99822 * 6 5 4 34 34 H 1.09004 * 109.46843 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.47082 * 299.99850 * 7 5 4 36 36 H 1.08999 * 109.47136 * 60.00390 * 7 5 4 37 37 H 1.08996 * 109.47056 * 83.26823 * 13 12 10 38 38 H 1.09002 * 109.47288 * 203.27319 * 13 12 10 39 39 H 1.08999 * 109.46770 * 323.27141 * 13 12 10 40 40 H 1.09001 * 109.46964 * 209.99611 * 14 12 10 41 41 H 1.08994 * 109.47093 * 329.99809 * 14 12 10 42 42 H 1.08992 * 109.47325 * 300.00081 * 15 14 12 43 43 H 1.09006 * 109.47247 * 60.00429 * 15 14 12 44 44 H 1.09001 * 109.47244 * 300.00103 * 16 15 14 45 45 H 1.08994 * 109.46926 * 60.00370 * 16 15 14 46 46 H 1.09001 * 109.47412 * 85.29506 * 18 17 16 47 47 H 1.09005 * 109.47387 * 205.30073 * 18 17 16 48 48 H 1.09006 * 109.47021 * 325.29135 * 18 17 16 49 49 H 0.97005 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2627 2.9791 1.2490 7 6 4.2627 2.9781 -1.2495 8 16 3.9447 -0.6780 -0.0057 9 6 2.2439 -1.1390 0.0005 10 6 1.7191 -2.5088 0.0003 11 8 0.5273 -2.7037 0.1496 12 7 2.5570 -3.5514 -0.1653 13 6 3.9923 -3.3169 -0.3415 14 6 2.0323 -4.9192 -0.1691 15 6 1.6619 -5.3193 -1.5987 16 6 1.1145 -6.7481 -1.6027 17 7 0.7604 -7.1315 -2.9716 18 6 1.7565 -7.7722 -3.8338 19 6 -0.5018 -6.8909 -3.4452 20 1 -1.0596 -6.0383 -3.0871 21 6 -1.0643 -7.7430 -4.3856 22 7 -0.4439 -8.8541 -4.7214 23 14 -2.7018 -7.3126 -5.1747 24 1 -2.5810 -6.0174 -5.8910 25 1 -3.0827 -8.3775 -6.1372 26 1 -3.7441 -7.2011 -4.1228 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8901 0.5134 30 1 5.5007 1.7346 0.0002 31 1 3.2442 3.3675 1.2488 32 1 4.9686 3.8096 1.2489 33 1 4.4191 2.3698 2.1393 34 1 4.9686 3.8086 -1.2500 35 1 4.4191 2.3681 -2.1392 36 1 3.2442 3.3665 -1.2496 37 1 4.4627 -3.1938 0.6340 38 1 4.4391 -4.1680 -0.8556 39 1 4.1429 -2.4146 -0.9340 40 1 2.7919 -5.6008 0.2137 41 1 1.1462 -4.9702 0.4636 42 1 0.9024 -4.6378 -1.9815 43 1 2.5480 -5.2684 -2.2314 44 1 1.8744 -7.4294 -1.2200 45 1 0.2285 -6.7995 -0.9700 46 1 1.7590 -8.8466 -3.6499 47 1 1.5086 -7.5829 -4.8783 48 1 2.7431 -7.3637 -3.6149 49 1 -0.8371 -9.4498 -5.3783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700203287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = 1.922833 kcal Electronic energy + Delta-G solvation = -27238.521495 eV Core-core repulsion = 23520.281055 eV Total energy + Delta-G solvation = -3718.240440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54825 -40.50947 -37.94266 -36.85182 -36.49446 -34.20432 -32.49997 -31.87852 -29.55285 -28.33225 -28.05557 -27.88882 -26.72328 -26.12838 -24.20972 -22.41223 -21.96782 -21.52300 -19.63800 -19.01158 -18.70984 -17.81565 -17.22118 -16.94916 -16.77335 -16.20678 -15.88149 -15.74585 -15.47520 -15.04217 -14.88275 -14.66644 -14.58540 -14.45479 -14.35377 -14.04071 -13.93085 -13.43486 -13.33868 -13.21280 -13.01678 -12.90689 -12.76535 -12.60290 -12.57527 -12.52016 -12.38260 -12.28964 -12.17113 -12.10970 -11.95004 -11.92301 -11.41166 -11.07297 -10.65794 -10.56084 -10.38192 -10.04852 -9.52955 -8.65361 -7.88708 -5.42995 -0.80799 0.15972 0.54741 1.35067 1.41974 1.43924 1.51045 1.83560 2.06103 2.47366 2.93768 3.26259 3.45240 3.70031 3.71623 3.96940 3.99438 4.03623 4.10986 4.13136 4.29196 4.42223 4.49634 4.52600 4.61072 4.61912 4.66994 4.69853 4.75439 4.79488 4.80862 4.88663 4.91649 4.92767 4.93864 5.08740 5.20212 5.24497 5.26762 5.33298 5.40851 5.43722 5.53081 5.60959 5.65437 6.17317 6.36174 6.63950 6.96265 7.15047 7.85662 8.31114 9.15188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002396 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.942568 B =11683.709263 C =12281.741684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.141 3.859 3 N -0.499 5.499 4 C 0.035 3.965 5 C -0.021 4.021 6 C -0.137 4.137 7 C -0.139 4.139 8 S 0.256 5.744 9 C -0.338 4.338 10 C 0.584 3.416 11 O -0.562 6.562 12 N -0.608 5.608 13 C 0.057 3.943 14 C 0.128 3.872 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.621 5.621 18 C 0.177 3.823 19 C -0.267 4.267 20 H 0.053 0.947 21 C -0.046 4.046 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.034 0.966 46 H -0.001 1.001 47 H 0.021 0.979 48 H 0.031 0.969 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.702 22.359 13.132 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.001 3.999 3 N -0.214 5.214 4 C -0.238 4.238 5 C -0.043 4.043 6 C -0.196 4.196 7 C -0.198 4.198 8 S 0.518 5.482 9 C -0.462 4.462 10 C 0.373 3.627 11 O -0.443 6.443 12 N -0.339 5.339 13 C -0.087 4.087 14 C 0.005 3.995 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.345 5.345 18 C 0.032 3.968 19 C -0.398 4.398 20 H 0.071 0.929 21 C -0.241 4.241 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.039 0.961 48 H 0.049 0.951 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.872 22.080 13.093 31.861 hybrid contribution -2.376 -0.109 -0.860 2.529 sum 16.496 21.971 12.234 30.075 Atomic orbital electron populations 1.20610 0.86711 1.04259 1.03342 1.20740 0.98816 0.85787 0.94510 1.66100 1.05735 1.31084 1.18498 1.28607 0.94669 1.02633 0.97926 1.20152 0.95383 0.90486 0.98273 1.21792 1.02686 0.99809 0.95308 1.21807 1.02683 0.99885 0.95425 1.83772 1.01706 0.97701 1.65044 1.25399 0.98970 0.98037 1.23769 1.17133 0.85608 0.83542 0.76451 1.90771 1.16452 1.85210 1.51850 1.47811 1.08838 1.06261 1.70971 1.22333 0.78986 1.03508 1.03862 1.21504 1.00688 0.80759 0.96508 1.22291 0.99923 0.98322 0.96614 1.20790 0.97861 0.93293 0.85419 1.44063 1.09361 1.71027 1.10033 1.20514 0.88667 0.94180 0.93474 1.19291 0.92859 1.05717 1.21932 0.92899 1.25936 1.01165 0.95247 1.01797 1.70151 1.40385 1.12167 1.35277 0.85383 0.80157 0.77060 0.78079 1.20614 1.21230 1.20278 0.90702 0.89685 0.89628 0.86409 0.93260 0.89244 0.92479 0.89206 0.92797 0.93282 0.89006 0.86726 0.90978 0.86568 0.91332 0.95875 0.92063 0.92011 0.94723 0.98270 0.96056 0.95104 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.80 71.24 0.70 -1.77 16 2 C 0.14 3.85 6.79 42.10 0.29 4.13 16 3 N -0.50 -12.09 10.48 -178.28 -1.87 -13.96 16 4 C 0.04 0.63 5.90 88.46 0.52 1.15 16 5 C -0.02 -0.23 3.35 -11.54 -0.04 -0.27 16 6 C -0.14 -1.38 9.17 71.98 0.66 -0.72 16 7 C -0.14 -1.52 9.17 71.98 0.66 -0.86 16 8 S 0.26 4.06 18.08 -56.49 -1.02 3.04 16 9 C -0.34 -8.84 6.25 23.88 0.15 -8.70 16 10 C 0.58 18.13 7.63 86.45 0.66 18.79 16 11 O -0.56 -21.85 13.84 -4.30 -0.06 -21.91 16 12 N -0.61 -15.34 2.87 -851.51 -2.45 -17.79 16 13 C 0.06 0.86 8.94 127.77 1.14 2.00 16 14 C 0.13 3.48 5.38 86.38 0.46 3.94 16 15 C -0.13 -4.62 5.86 30.60 0.18 -4.45 16 16 C 0.15 6.34 5.69 86.38 0.49 6.83 16 17 N -0.62 -32.60 2.90 -726.93 -2.11 -34.71 16 18 C 0.18 8.85 8.99 127.77 1.15 10.00 16 19 C -0.27 -15.64 9.58 84.03 0.80 -14.84 16 20 H 0.05 3.14 7.84 -2.91 -0.02 3.11 16 21 C -0.05 -2.68 5.14 84.86 0.44 -2.24 16 22 N -0.93 -56.78 10.97 21.65 0.24 -56.55 16 23 Si 0.97 47.22 29.56 68.60 2.03 49.25 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 27 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.08 2.65 5.86 -2.39 -0.01 2.63 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.12 0.64 8.12 -2.39 -0.02 0.62 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.94 7.80 -2.39 -0.02 0.93 16 38 H 0.11 1.34 8.02 -2.39 -0.02 1.32 16 39 H 0.07 1.07 4.63 -20.31 -0.09 0.98 16 40 H 0.12 2.27 8.07 -2.39 -0.02 2.25 16 41 H 0.07 2.14 7.42 -2.39 -0.02 2.12 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 45 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 46 H 0.00 -0.05 7.75 -2.39 -0.02 -0.07 16 47 H 0.02 1.15 7.09 -2.38 -0.02 1.13 16 48 H 0.03 1.28 8.11 -2.38 -0.02 1.26 16 49 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -77.20 404.22 3.86 -73.34 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.84 Total: 6.27 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 8.26 Total: 13.02 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.18 Total: -123.00 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.02 Total: 3.04 kcal Total: -77.20 3.86 -73.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700203287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.258 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds