Wall clock time and date at job start Tue Mar 31 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30948 * 122.90453 * 2 1 4 4 C 1.29427 * 117.36221 * 180.02562 * 3 2 1 5 5 C 1.50701 * 124.80237 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47437 * 59.94581 * 5 4 3 7 7 C 1.52999 * 109.47108 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47087 * 299.94395 * 5 4 3 9 9 S 1.70949 * 110.39452 * 359.97438 * 4 3 2 10 10 C 1.35658 * 122.90436 * 180.02562 * 2 1 3 11 11 C 1.46680 * 126.13000 * 0.02562 * 10 2 1 12 12 O 1.21685 * 120.00219 * 359.97438 * 11 10 2 13 13 N 1.34786 * 119.99913 * 180.02562 * 11 10 2 14 14 C 1.46500 * 119.99517 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46673 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47386 * 179.97438 * 15 14 13 17 17 H 1.09007 * 109.46557 * 305.00374 * 16 15 14 18 18 C 1.52997 * 109.47482 * 185.00145 * 16 15 14 19 19 N 1.46501 * 109.46887 * 64.99942 * 16 15 14 20 20 C 1.36945 * 119.99855 * 205.00337 * 19 16 15 21 21 H 1.07996 * 119.99932 * 0.02562 * 20 19 16 22 22 C 1.38809 * 119.99494 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00668 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99617 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46909 * 60.00763 * 24 22 20 26 26 H 1.48505 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47587 * 300.00707 * 24 22 20 28 28 H 1.09006 * 109.46755 * 269.99915 * 1 2 3 29 29 H 1.08998 * 109.47081 * 29.99650 * 1 2 3 30 30 H 1.08998 * 109.47286 * 149.99880 * 1 2 3 31 31 H 1.09003 * 109.46774 * 60.00060 * 6 5 4 32 32 H 1.08996 * 109.47041 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46828 * 300.00346 * 6 5 4 34 34 H 1.08998 * 109.47628 * 59.99491 * 7 5 4 35 35 H 1.08996 * 109.47320 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.46705 * 299.99265 * 7 5 4 37 37 H 1.08999 * 109.46852 * 59.99854 * 8 5 4 38 38 H 1.08996 * 109.47266 * 180.02562 * 8 5 4 39 39 H 1.08998 * 109.46879 * 300.00601 * 8 5 4 40 40 H 0.96995 * 119.99775 * 359.97438 * 13 11 10 41 41 H 1.08991 * 109.47457 * 299.99445 * 14 13 11 42 42 H 1.09000 * 109.47494 * 60.00148 * 14 13 11 43 43 H 1.08996 * 109.47645 * 300.00188 * 15 14 13 44 44 H 1.09000 * 109.47245 * 60.00295 * 15 14 13 45 45 H 1.08997 * 109.47139 * 179.97438 * 18 16 15 46 46 H 1.08999 * 109.47142 * 300.00278 * 18 16 15 47 47 H 1.09000 * 109.47013 * 60.00246 * 18 16 15 48 48 H 0.97001 * 119.99958 * 25.00264 * 19 16 15 49 49 H 0.97000 * 120.00191 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2622 2.9786 1.2492 7 6 5.9118 1.5778 -0.0003 8 6 4.2632 2.9787 -1.2494 9 16 3.9448 -0.6780 -0.0004 10 6 2.2439 -1.1390 -0.0005 11 6 1.7191 -2.5086 -0.0017 12 8 0.5174 -2.6998 -0.0018 13 7 2.5680 -3.5556 -0.0015 14 6 2.0437 -4.9236 -0.0032 15 6 3.2082 -5.9159 -0.0034 16 6 2.6609 -7.3447 -0.0045 17 1 1.9800 -7.4735 0.8370 18 6 3.8202 -8.3352 0.1211 19 7 1.9416 -7.5910 -1.2568 20 6 0.9598 -8.5444 -1.3063 21 1 0.7155 -9.1144 -0.4222 22 6 0.2787 -8.7781 -2.4931 23 7 0.5768 -8.0839 -3.5708 24 14 -1.0600 -10.0792 -2.5609 25 1 -2.1330 -9.7362 -1.5931 26 1 -1.6292 -10.1328 -3.9315 27 1 -0.4829 -11.4022 -2.2118 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4183 2.3689 2.1392 32 1 4.9682 3.8090 1.2497 33 1 3.2438 3.3669 1.2488 34 1 6.0682 0.9686 -0.8904 35 1 6.6174 2.4085 0.0005 36 1 6.0681 0.9680 0.8896 37 1 3.2447 3.3670 -1.2497 38 1 4.9691 3.8092 -1.2493 39 1 4.4198 2.3691 -2.1393 40 1 3.5259 -3.4032 -0.0011 41 1 1.4330 -5.0798 0.8859 42 1 1.4349 -5.0783 -0.8940 43 1 3.8188 -5.7597 -0.8927 44 1 3.8174 -5.7614 0.8872 45 1 3.4301 -9.3530 0.1208 46 1 4.5010 -8.2062 -0.7203 47 1 4.3553 -8.1519 1.0529 48 1 2.1608 -7.0788 -2.0508 49 1 0.1006 -8.2470 -4.3999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713423306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:47 Heat of formation + Delta-G solvation = -7.704647 kcal Electronic energy + Delta-G solvation = -26843.670337 eV Core-core repulsion = 23125.012418 eV Total energy + Delta-G solvation = -3718.657919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58997 -39.29217 -37.18997 -36.53728 -34.43671 -32.28911 -31.53099 -29.74609 -28.54756 -27.91463 -27.70268 -27.54053 -25.25437 -23.94069 -22.95823 -21.34005 -20.44098 -20.06936 -19.17494 -17.92827 -17.24903 -16.81249 -15.89046 -15.77509 -15.24666 -15.08693 -14.71738 -14.43627 -14.26818 -14.00819 -13.83080 -13.65915 -13.48786 -12.98684 -12.87499 -12.81791 -12.59630 -12.50301 -12.36191 -12.13173 -12.04807 -11.88721 -11.56123 -11.52222 -11.46180 -11.35259 -11.10535 -10.91131 -10.73472 -10.63311 -10.30723 -10.10923 -9.98331 -9.70215 -9.66762 -9.61814 -9.03098 -8.89341 -8.78748 -6.94167 -5.73406 -3.02322 0.07667 0.95367 1.38088 2.30642 3.16175 3.20823 3.46956 3.51563 3.52223 3.56979 4.25286 4.40832 4.50259 4.62252 4.77378 4.83572 4.98849 5.08843 5.16135 5.27963 5.29869 5.38196 5.39430 5.43315 5.45019 5.56313 5.57903 5.63047 5.67002 5.69454 5.77426 5.84137 5.86712 5.87548 6.05231 6.16710 6.24041 6.33761 6.38686 6.45643 6.62816 6.68802 6.86052 7.06009 7.39600 7.54628 7.72956 8.21698 8.44829 9.56147 10.12480 10.47073 11.49130 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002260 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.452960 B =12383.942081 C =13142.654756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.148 3.852 3 N -0.473 5.473 4 C 0.073 3.927 5 C 0.008 3.992 6 C -0.134 4.134 7 C -0.157 4.157 8 C -0.135 4.135 9 S 0.157 5.843 10 C -0.299 4.299 11 C 0.592 3.408 12 O -0.517 6.517 13 N -0.722 5.722 14 C 0.123 3.877 15 C -0.133 4.133 16 C 0.175 3.825 17 H 0.050 0.950 18 C -0.163 4.163 19 N -0.723 5.723 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.393 0.607 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.035 0.965 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.030 23.435 9.516 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.011 3.989 3 N -0.187 5.187 4 C -0.203 4.203 5 C 0.004 3.996 6 C -0.193 4.193 7 C -0.215 4.215 8 C -0.194 4.194 9 S 0.416 5.584 10 C -0.423 4.423 11 C 0.376 3.624 12 O -0.395 6.395 13 N -0.373 5.373 14 C 0.001 3.999 15 C -0.172 4.172 16 C 0.064 3.936 17 H 0.068 0.932 18 C -0.223 4.223 19 N -0.365 5.365 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.783 23.077 9.534 28.051 hybrid contribution -0.997 -0.588 -0.409 1.228 sum 11.785 22.489 9.125 26.980 Atomic orbital electron populations 1.20680 0.85919 1.04635 1.03677 1.20669 0.98650 0.84856 0.94728 1.65967 1.04256 1.31275 1.17241 1.27419 0.94275 0.97807 1.00772 1.19324 0.91259 0.90636 0.98373 1.21847 1.03083 0.99062 0.95304 1.22060 0.94391 1.02107 1.02915 1.21853 1.03085 0.99079 0.95349 1.83759 1.05499 1.02430 1.66700 1.25605 0.96293 0.99333 1.21031 1.16661 0.86310 0.82310 0.77083 1.90820 1.14159 1.84794 1.49752 1.46029 1.09141 1.06954 1.75155 1.21527 0.96946 0.77581 1.03894 1.22076 0.97100 0.96339 1.01678 1.20146 0.92408 0.89812 0.91196 0.93235 1.22424 0.99348 1.01409 0.99168 1.42449 1.41811 1.44855 1.07431 1.19171 1.10339 1.11880 0.95576 0.91255 1.24725 1.00232 0.99991 0.95913 1.69642 1.44404 1.43395 1.00668 0.86296 0.81999 0.81455 0.76596 1.21245 1.21755 1.21361 0.90165 0.90853 0.87918 0.92413 0.91402 0.91304 0.91588 0.90396 0.91670 0.91299 0.91396 0.92323 0.77378 0.91438 0.89352 0.91548 0.91886 0.92682 0.93516 0.94577 0.78292 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.70 36.01 0.35 -0.79 16 2 C 0.15 2.00 6.79 -83.89 -0.57 1.43 16 3 N -0.47 -5.80 10.48 -7.70 -0.08 -5.88 16 4 C 0.07 0.74 5.78 -13.29 -0.08 0.66 16 5 C 0.01 0.06 0.99 -155.66 -0.15 -0.10 16 6 C -0.13 -0.84 8.45 37.16 0.31 -0.53 16 7 C -0.16 -0.82 7.53 37.16 0.28 -0.54 16 8 C -0.13 -0.88 8.45 37.16 0.31 -0.57 16 9 S 0.16 1.54 20.68 -107.50 -2.22 -0.68 16 10 C -0.30 -4.05 6.48 -37.10 -0.24 -4.29 16 11 C 0.59 9.47 7.78 -12.85 -0.10 9.37 16 12 O -0.52 -9.99 14.27 5.20 0.07 -9.91 16 13 N -0.72 -10.37 5.55 -61.62 -0.34 -10.71 16 14 C 0.12 2.05 5.56 -4.04 -0.02 2.03 16 15 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 16 C 0.17 3.33 2.89 -67.93 -0.20 3.13 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 19 N -0.72 -17.66 4.57 -53.42 -0.24 -17.91 16 20 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.50 6.01 -51.93 -0.31 1.19 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.39 4.53 7.66 -40.82 -0.31 4.21 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.83 7.75 -51.93 -0.40 1.42 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -32.61 411.07 -9.52 -42.14 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.47 Total: 8.73 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.13 Total: -2.03 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.06 Total: -62.10 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.22 Total: -0.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.61 -9.52 -42.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713423306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.431 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds