Wall clock time and date at job start Tue Mar 31 2020 22:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30948 * 122.90453 * 2 1 4 4 C 1.29427 * 117.36221 * 180.02562 * 3 2 1 5 5 C 1.50701 * 124.80237 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47437 * 59.94581 * 5 4 3 7 7 C 1.52999 * 109.47108 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47087 * 299.94395 * 5 4 3 9 9 S 1.70949 * 110.39452 * 359.97438 * 4 3 2 10 10 C 1.35658 * 122.90436 * 180.02562 * 2 1 3 11 11 C 1.46680 * 126.13000 * 0.02562 * 10 2 1 12 12 O 1.21685 * 120.00219 * 359.97438 * 11 10 2 13 13 N 1.34786 * 119.99913 * 180.02562 * 11 10 2 14 14 C 1.46500 * 119.99517 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46673 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47386 * 179.97438 * 15 14 13 17 17 H 1.09007 * 109.46557 * 305.00374 * 16 15 14 18 18 C 1.52997 * 109.47482 * 185.00145 * 16 15 14 19 19 N 1.46501 * 109.46887 * 64.99942 * 16 15 14 20 20 C 1.36945 * 119.99855 * 205.00337 * 19 16 15 21 21 H 1.07996 * 119.99932 * 0.02562 * 20 19 16 22 22 C 1.38809 * 119.99494 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00668 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99617 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46909 * 60.00763 * 24 22 20 26 26 H 1.48505 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47587 * 300.00707 * 24 22 20 28 28 H 1.09006 * 109.46755 * 269.99915 * 1 2 3 29 29 H 1.08998 * 109.47081 * 29.99650 * 1 2 3 30 30 H 1.08998 * 109.47286 * 149.99880 * 1 2 3 31 31 H 1.09003 * 109.46774 * 60.00060 * 6 5 4 32 32 H 1.08996 * 109.47041 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46828 * 300.00346 * 6 5 4 34 34 H 1.08998 * 109.47628 * 59.99491 * 7 5 4 35 35 H 1.08996 * 109.47320 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.46705 * 299.99265 * 7 5 4 37 37 H 1.08999 * 109.46852 * 59.99854 * 8 5 4 38 38 H 1.08996 * 109.47266 * 180.02562 * 8 5 4 39 39 H 1.08998 * 109.46879 * 300.00601 * 8 5 4 40 40 H 0.96995 * 119.99775 * 359.97438 * 13 11 10 41 41 H 1.08991 * 109.47457 * 299.99445 * 14 13 11 42 42 H 1.09000 * 109.47494 * 60.00148 * 14 13 11 43 43 H 1.08996 * 109.47645 * 300.00188 * 15 14 13 44 44 H 1.09000 * 109.47245 * 60.00295 * 15 14 13 45 45 H 1.08997 * 109.47139 * 179.97438 * 18 16 15 46 46 H 1.08999 * 109.47142 * 300.00278 * 18 16 15 47 47 H 1.09000 * 109.47013 * 60.00246 * 18 16 15 48 48 H 0.97001 * 119.99958 * 25.00264 * 19 16 15 49 49 H 0.97000 * 120.00191 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2622 2.9786 1.2492 7 6 5.9118 1.5778 -0.0003 8 6 4.2632 2.9787 -1.2494 9 16 3.9448 -0.6780 -0.0004 10 6 2.2439 -1.1390 -0.0005 11 6 1.7191 -2.5086 -0.0017 12 8 0.5174 -2.6998 -0.0018 13 7 2.5680 -3.5556 -0.0015 14 6 2.0437 -4.9236 -0.0032 15 6 3.2082 -5.9159 -0.0034 16 6 2.6609 -7.3447 -0.0045 17 1 1.9800 -7.4735 0.8370 18 6 3.8202 -8.3352 0.1211 19 7 1.9416 -7.5910 -1.2568 20 6 0.9598 -8.5444 -1.3063 21 1 0.7155 -9.1144 -0.4222 22 6 0.2787 -8.7781 -2.4931 23 7 0.5768 -8.0839 -3.5708 24 14 -1.0600 -10.0792 -2.5609 25 1 -2.1330 -9.7362 -1.5931 26 1 -1.6292 -10.1328 -3.9315 27 1 -0.4829 -11.4022 -2.2118 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4183 2.3689 2.1392 32 1 4.9682 3.8090 1.2497 33 1 3.2438 3.3669 1.2488 34 1 6.0682 0.9686 -0.8904 35 1 6.6174 2.4085 0.0005 36 1 6.0681 0.9680 0.8896 37 1 3.2447 3.3670 -1.2497 38 1 4.9691 3.8092 -1.2493 39 1 4.4198 2.3691 -2.1393 40 1 3.5259 -3.4032 -0.0011 41 1 1.4330 -5.0798 0.8859 42 1 1.4349 -5.0783 -0.8940 43 1 3.8188 -5.7597 -0.8927 44 1 3.8174 -5.7614 0.8872 45 1 3.4301 -9.3530 0.1208 46 1 4.5010 -8.2062 -0.7203 47 1 4.3553 -8.1519 1.0529 48 1 2.1608 -7.0788 -2.0508 49 1 0.1006 -8.2470 -4.3999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713423306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:46 Heat of formation + Delta-G solvation = -29.146102 kcal Electronic energy + Delta-G solvation = -26844.600108 eV Core-core repulsion = 23125.012418 eV Total energy + Delta-G solvation = -3719.587690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57652 -40.44484 -38.21567 -37.70989 -35.94378 -34.17878 -32.50303 -31.29861 -30.11895 -28.74113 -28.33855 -28.19021 -26.09497 -25.83871 -24.38546 -22.58550 -21.56649 -21.10997 -20.33659 -19.24929 -18.80747 -17.88309 -17.07835 -16.91547 -16.66544 -16.08229 -16.03675 -15.57254 -15.33897 -15.22557 -15.01942 -14.91962 -14.47934 -14.42815 -14.14772 -13.74634 -13.60575 -13.54058 -13.25677 -13.13462 -12.99080 -12.79711 -12.63860 -12.60954 -12.55169 -12.35085 -12.34120 -12.24474 -12.13602 -11.98004 -11.93364 -11.66105 -11.60490 -11.19427 -10.93216 -10.72738 -10.61703 -10.22087 -9.79377 -8.97725 -7.92195 -5.19010 -0.86506 0.08566 0.47927 1.31025 1.45795 1.48857 1.54220 1.96379 2.02951 2.57312 2.80852 3.41871 3.60793 3.67450 3.88875 3.90725 3.92022 3.95301 4.02396 4.20973 4.24456 4.34247 4.60443 4.63818 4.66032 4.69436 4.73772 4.74519 4.80505 4.84824 4.87662 4.96085 4.96822 5.00014 5.02612 5.07119 5.15936 5.22116 5.26162 5.34530 5.35543 5.39017 5.39847 5.54305 5.61665 6.30587 6.31560 6.54931 7.01926 7.36655 8.14507 8.35689 9.31157 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002260 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.452960 B =12383.942081 C =13142.654756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.143 3.857 3 N -0.493 5.493 4 C 0.076 3.924 5 C 0.005 3.995 6 C -0.132 4.132 7 C -0.158 4.158 8 C -0.133 4.133 9 S 0.220 5.780 10 C -0.337 4.337 11 C 0.588 3.412 12 O -0.562 6.562 13 N -0.709 5.709 14 C 0.134 3.866 15 C -0.117 4.117 16 C 0.165 3.835 17 H 0.044 0.956 18 C -0.153 4.153 19 N -0.735 5.735 20 C -0.233 4.233 21 H 0.074 0.926 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.966 3.034 25 H -0.282 1.282 26 H -0.298 1.298 27 H -0.276 1.276 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.409 0.591 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.033 0.967 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.014 24.601 11.081 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.004 3.996 3 N -0.207 5.207 4 C -0.199 4.199 5 C 0.001 3.999 6 C -0.191 4.191 7 C -0.215 4.215 8 C -0.192 4.192 9 S 0.481 5.519 10 C -0.460 4.460 11 C 0.375 3.625 12 O -0.443 6.443 13 N -0.360 5.360 14 C 0.011 3.989 15 C -0.156 4.156 16 C 0.056 3.944 17 H 0.062 0.938 18 C -0.213 4.213 19 N -0.376 5.376 20 C -0.365 4.365 21 H 0.092 0.908 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.208 1.208 26 H -0.225 1.225 27 H -0.202 1.202 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.842 24.233 11.156 31.027 hybrid contribution -1.818 -0.827 -0.810 2.155 sum 14.024 23.405 10.346 29.181 Atomic orbital electron populations 1.20598 0.86262 1.03981 1.03799 1.20814 0.99014 0.85415 0.94348 1.66032 1.05245 1.30729 1.18741 1.28205 0.94267 0.99195 0.98239 1.19591 0.91553 0.89788 0.98993 1.21848 1.02867 0.99631 0.94720 1.22112 0.93247 1.03081 1.03108 1.21860 1.02879 0.99670 0.94814 1.83411 1.01739 1.01373 1.65416 1.25440 0.99225 0.97916 1.23465 1.17033 0.85890 0.83473 0.76117 1.90793 1.16080 1.85684 1.51716 1.45800 1.09886 1.05746 1.74615 1.21203 0.97228 0.79311 1.01194 1.21942 0.96497 0.93117 1.04009 1.20447 0.92713 0.92672 0.88528 0.93778 1.22259 0.98484 0.99287 1.01258 1.42651 1.41908 1.44073 1.08955 1.19561 1.10097 1.11451 0.95366 0.90769 1.25490 1.03006 1.02591 0.95973 1.69799 1.45915 1.45446 1.00981 0.85312 0.79526 0.79519 0.76044 1.20843 1.22465 1.20239 0.89680 0.89580 0.90315 0.92488 0.88951 0.92887 0.91554 0.88097 0.91267 0.92888 0.88903 0.92782 0.75426 0.92359 0.94013 0.90940 0.87583 0.94800 0.93611 0.90541 0.79666 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 9.70 71.24 0.69 -1.64 16 2 C 0.14 3.90 6.79 42.09 0.29 4.19 16 3 N -0.49 -11.82 10.48 -178.29 -1.87 -13.69 16 4 C 0.08 1.41 5.78 88.46 0.51 1.92 16 5 C 0.00 0.05 0.99 -52.93 -0.05 0.00 16 6 C -0.13 -1.33 8.45 71.98 0.61 -0.72 16 7 C -0.16 -1.08 7.53 71.98 0.54 -0.53 16 8 C -0.13 -1.45 8.45 71.98 0.61 -0.85 16 9 S 0.22 3.90 20.68 -56.49 -1.17 2.73 16 10 C -0.34 -9.14 6.48 23.88 0.15 -8.98 16 11 C 0.59 19.35 7.78 86.45 0.67 20.02 16 12 O -0.56 -23.03 14.27 -4.30 -0.06 -23.09 16 13 N -0.71 -20.13 5.55 -467.08 -2.59 -22.73 16 14 C 0.13 4.53 5.56 86.38 0.48 5.01 16 15 C -0.12 -3.35 4.87 30.60 0.15 -3.21 16 16 C 0.16 6.09 2.89 44.99 0.13 6.22 16 17 H 0.04 1.68 8.08 -2.38 -0.02 1.66 16 18 C -0.15 -4.95 9.49 71.98 0.68 -4.27 16 19 N -0.74 -36.37 4.57 -322.93 -1.48 -37.85 16 20 C -0.23 -12.98 9.93 84.03 0.83 -12.14 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.73 13.06 21.65 0.28 -60.44 16 24 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.50 6.01 -2.39 -0.01 2.48 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.47 7.92 -2.39 -0.02 0.45 16 35 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.07 0.44 7.92 -2.38 -0.02 0.42 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.41 8.68 7.66 -92.71 -0.71 7.97 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.81 7.75 -2.39 -0.02 1.80 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.37 19.93 7.80 -92.71 -0.72 19.21 16 49 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -74.20 411.07 1.42 -72.78 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.49 Total: 31.90 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 6.76 Total: 0.88 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.66 Total: -134.71 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.17 Total: 2.73 kcal Total: -74.20 1.42 -72.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713423306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.635 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds