Wall clock time and date at job start Tue Mar 31 2020 23:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 N 1.46492 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00290 * 275.31270 * 4 3 2 6 6 H 1.07998 * 119.99957 * 37.58194 * 5 4 3 7 7 C 1.38810 * 119.99663 * 217.57653 * 5 4 3 8 8 N 1.31619 * 120.00464 * 21.43827 * 7 5 4 9 9 Si 1.86802 * 119.99764 * 201.42985 * 7 5 4 10 10 H 1.48508 * 109.46952 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47148 * 120.00395 * 9 7 5 12 12 H 1.48499 * 109.47505 * 240.00588 * 9 7 5 13 13 C 1.46503 * 119.99569 * 95.31568 * 4 3 2 14 14 C 1.53003 * 109.46995 * 269.99392 * 13 4 3 15 15 N 1.46503 * 109.46995 * 180.02562 * 14 13 4 16 16 C 1.34775 * 119.99655 * 180.02562 * 15 14 13 17 17 O 1.21685 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.46684 * 119.99724 * 180.02562 * 16 15 14 19 19 C 1.35655 * 126.13214 * 359.97438 * 18 16 15 20 20 N 1.30944 * 114.19237 * 179.74937 * 19 18 16 21 21 C 1.29430 * 117.36407 * 0.52140 * 20 19 18 22 22 C 1.50699 * 124.80726 * 179.76708 * 21 20 19 23 23 C 1.53001 * 109.46970 * 59.69285 * 22 21 20 24 24 C 1.52998 * 109.47111 * 299.69529 * 22 21 20 25 25 C 1.52997 * 109.47235 * 179.69537 * 22 21 20 26 26 S 1.70957 * 110.38932 * 359.49667 * 21 20 19 27 27 H 1.08996 * 109.47316 * 59.99571 * 1 2 3 28 28 H 1.09001 * 109.46894 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46624 * 299.99535 * 1 2 3 30 30 H 1.09005 * 109.46892 * 240.00609 * 2 1 3 31 31 H 1.08996 * 109.47316 * 120.00429 * 2 1 3 32 32 H 1.09005 * 109.46683 * 60.00481 * 3 2 1 33 33 H 1.09003 * 109.47290 * 300.01105 * 3 2 1 34 34 H 0.97000 * 119.99783 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47242 * 150.00319 * 13 4 3 36 36 H 1.08999 * 109.47532 * 29.99596 * 13 4 3 37 37 H 1.08999 * 109.46711 * 60.00702 * 14 13 4 38 38 H 1.08999 * 109.47147 * 300.00440 * 14 13 4 39 39 H 0.96996 * 120.00199 * 0.02562 * 15 14 13 40 40 H 1.08004 * 122.90351 * 0.02562 * 19 18 16 41 41 H 1.08997 * 109.47089 * 60.00278 * 23 22 21 42 42 H 1.08998 * 109.47650 * 300.00071 * 23 22 21 43 43 H 1.09005 * 109.46899 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.47644 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47197 * 300.00208 * 24 22 21 46 46 H 1.09005 * 109.47362 * 59.99648 * 24 22 21 47 47 H 1.08997 * 109.47104 * 299.99893 * 25 22 21 48 48 H 1.08995 * 109.47204 * 59.99528 * 25 22 21 49 49 H 1.09001 * 109.46947 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.3325 1.1799 6 1 3.8187 0.6868 1.9618 7 6 5.3625 2.0509 1.3714 8 7 5.6025 3.1238 0.6478 9 14 6.5992 1.4949 2.6562 10 1 6.0971 0.2700 3.3292 11 1 7.8979 1.2010 1.9987 12 1 6.7861 2.5714 3.6620 13 6 4.2369 1.5602 -1.2643 14 6 4.4917 0.1649 -1.8379 15 7 5.2242 0.2826 -3.1013 16 6 5.5605 -0.8255 -3.7909 17 8 5.2554 -1.9236 -3.3645 18 6 6.2943 -0.7077 -5.0555 19 6 6.6948 0.4475 -5.6433 20 7 7.3401 0.2804 -6.7704 21 6 7.5068 -0.9340 -7.1861 22 6 8.2174 -1.3177 -8.4584 23 6 9.6597 -0.8095 -8.4102 24 6 7.4960 -0.6923 -9.6540 25 6 8.2178 -2.8409 -8.6029 26 16 6.8131 -2.0414 -6.0838 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 1.9565 -0.8899 34 1 6.4215 3.6260 0.7820 35 1 5.1895 2.0597 -1.0873 36 1 3.6475 2.1423 -1.9727 37 1 3.5392 -0.3346 -2.0150 38 1 5.0811 -0.4172 -1.1295 39 1 5.4670 1.1579 -3.4413 40 1 6.5021 1.4206 -5.2163 41 1 10.1736 -1.2551 -7.5585 42 1 9.6594 0.2756 -8.3073 43 1 10.1738 -1.0875 -9.3303 44 1 8.0102 -0.9694 -10.5742 45 1 6.4685 -1.0543 -9.6883 46 1 7.4956 0.3929 -9.5511 47 1 8.7317 -3.2864 -7.7511 48 1 7.1903 -3.2029 -8.6371 49 1 8.7322 -3.1184 -9.5229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714659988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:19 Heat of formation + Delta-G solvation = -14.413354 kcal Electronic energy + Delta-G solvation = -26960.393670 eV Core-core repulsion = 23241.444840 eV Total energy + Delta-G solvation = -3718.948830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35481 -40.39062 -38.27381 -37.63176 -35.85435 -34.62097 -32.78267 -31.65462 -29.42385 -28.34656 -28.17853 -27.35423 -27.00955 -25.17343 -23.24616 -22.68757 -21.95869 -21.70809 -20.37267 -18.82334 -18.70700 -18.09603 -17.06858 -16.83590 -16.58916 -16.03990 -15.96762 -15.80940 -15.55840 -15.48050 -15.06293 -14.71569 -14.67069 -14.50478 -14.32210 -14.23888 -13.35844 -13.21439 -13.11713 -13.07382 -12.95012 -12.68845 -12.66660 -12.61237 -12.51794 -12.42694 -12.22713 -12.05245 -12.00068 -11.95164 -11.88546 -11.70516 -11.54581 -11.28928 -10.63471 -10.59398 -10.54614 -10.20802 -9.94655 -8.61147 -7.87757 -5.50448 -0.85032 0.06275 0.61794 1.33732 1.40838 1.46126 1.54905 2.05611 2.13513 2.48703 2.87769 3.19925 3.60170 3.67250 3.78546 3.92515 3.98008 4.09608 4.20569 4.27861 4.31277 4.35729 4.50754 4.66811 4.68970 4.70245 4.73873 4.84056 4.85003 4.85360 4.96438 4.96900 4.98397 5.04753 5.12458 5.21102 5.23567 5.24974 5.29083 5.36374 5.38466 5.42945 5.61622 5.63680 5.71533 6.36426 6.45097 6.51037 7.02288 7.13761 7.80497 8.32732 9.08089 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002547 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.644876 B =10992.425441 C =12077.548965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.052 0.948 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.698 5.698 16 C 0.589 3.411 17 O -0.584 6.584 18 C -0.329 4.329 19 C 0.107 3.893 20 N -0.491 5.491 21 C 0.064 3.936 22 C 0.005 3.995 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.158 4.158 26 S 0.231 5.769 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.412 0.588 40 H 0.199 0.801 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -7.774 -22.299 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.398 4.398 6 H 0.069 0.931 7 C -0.226 4.226 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.005 4.005 15 N -0.349 5.349 16 C 0.375 3.625 17 O -0.467 6.467 18 C -0.453 4.453 19 C -0.052 4.052 20 N -0.205 5.205 21 C -0.210 4.210 22 C 0.001 3.999 23 C -0.191 4.191 24 C -0.190 4.190 25 C -0.216 4.216 26 S 0.492 5.508 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.216 0.784 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.959 -9.103 -22.207 24.325 hybrid contribution 0.556 1.207 1.541 2.035 sum 4.515 -7.897 -20.666 22.579 Atomic orbital electron populations 1.21654 0.94243 1.01775 1.02014 1.22023 0.96444 0.98789 1.00261 1.21056 0.83262 0.94518 0.99147 1.43837 1.00895 1.85019 1.01921 1.19164 1.06154 1.19841 0.94676 0.93058 1.25739 1.02095 0.94761 0.99988 1.70081 1.25883 1.15489 1.43765 0.85519 0.79407 0.78024 0.79355 1.19791 1.21689 1.21293 1.20928 0.99382 0.91652 0.86283 1.22048 0.94373 1.01394 0.82720 1.45716 1.57022 1.08816 1.23386 1.17074 0.78359 0.84358 0.82692 1.90794 1.57352 1.27537 1.70969 1.25676 1.15986 0.99485 1.04188 1.22513 0.93422 0.99234 0.90068 1.66128 1.17653 1.22615 1.14112 1.28323 0.99692 0.91395 1.01619 1.19561 0.95409 0.97542 0.87373 1.21855 0.92466 1.01451 1.03366 1.21846 1.00141 1.00866 0.96171 1.22106 1.03466 0.91463 1.04565 1.83954 1.46849 1.08742 1.11284 0.92084 0.92297 0.92560 0.93644 0.94282 0.94550 0.93182 0.93695 0.90713 0.93503 0.92903 0.94769 0.75160 0.78447 0.92919 0.92566 0.88934 0.88978 0.92647 0.92550 0.91890 0.91663 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.14 -4.89 6.23 30.60 0.19 -4.70 16 3 C 0.15 5.96 5.72 86.38 0.49 6.45 16 4 N -0.60 -28.84 2.43 -701.99 -1.71 -30.55 16 5 C -0.27 -14.48 9.45 84.03 0.79 -13.68 16 6 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 7 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 8 N -0.91 -50.76 11.47 21.65 0.25 -50.52 16 9 Si 0.95 44.45 29.60 68.60 2.03 46.48 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 13 C 0.14 6.40 5.45 86.38 0.47 6.87 16 14 C 0.12 4.97 6.00 86.38 0.52 5.49 16 15 N -0.70 -23.97 5.54 -467.07 -2.59 -26.56 16 16 C 0.59 21.09 7.79 86.45 0.67 21.76 16 17 O -0.58 -25.35 16.97 -4.30 -0.07 -25.42 16 18 C -0.33 -9.47 6.48 23.88 0.15 -9.32 16 19 C 0.11 2.63 10.93 84.23 0.92 3.55 16 20 N -0.49 -11.66 10.49 -190.30 -2.00 -13.65 16 21 C 0.06 1.31 5.78 88.46 0.51 1.82 16 22 C 0.01 0.07 0.99 -52.93 -0.05 0.02 16 23 C -0.13 -1.63 8.45 71.98 0.61 -1.02 16 24 C -0.13 -1.53 8.45 71.98 0.61 -0.92 16 25 C -0.16 -1.55 7.53 71.98 0.54 -1.01 16 26 S 0.23 5.44 21.38 -56.49 -1.21 4.23 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.69 6.64 -2.38 -0.02 1.67 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 33 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 34 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 35 H 0.08 3.74 5.52 -2.38 -0.01 3.72 16 36 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 37 H 0.05 2.20 6.64 -2.39 -0.02 2.18 16 38 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 11.66 7.18 -92.71 -0.67 11.00 16 40 H 0.20 3.94 7.15 -2.91 -0.02 3.92 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.06 0.66 7.92 -2.39 -0.02 0.64 16 48 H 0.06 0.66 7.92 -2.39 -0.02 0.64 16 49 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -67.77 409.99 2.54 -65.23 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.27 Total: 19.66 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 7.57 Total: 11.10 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -6.04 Total: -121.28 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.07 Total: -25.42 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.21 Total: 4.23 kcal Total: -67.77 2.54 -65.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.819 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds