Wall clock time and date at job start Tue Mar 31 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29019 * 124.91701 * 2 1 4 4 C 1.31779 * 117.12545 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.75299 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46733 * 90.02787 * 5 4 3 7 7 O 1.21281 * 119.99782 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99726 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99880 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47194 * 325.00351 * 9 8 6 11 11 C 1.52992 * 109.47240 * 205.00358 * 9 8 6 12 12 N 1.46499 * 109.47267 * 55.00209 * 11 9 8 13 13 C 1.36935 * 119.99938 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31614 * 119.99892 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99858 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99644 * 17 15 13 19 19 H 1.48494 * 109.46800 * 209.99692 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99394 * 17 15 13 21 21 C 1.53004 * 109.46876 * 85.00192 * 9 8 6 22 22 C 1.52997 * 109.47180 * 294.99855 * 21 9 8 23 23 C 1.52995 * 109.47079 * 174.99816 * 22 21 9 24 24 C 1.52996 * 109.47483 * 295.00226 * 22 21 9 25 25 C 1.33640 * 114.50223 * 0.23988 * 4 3 2 26 26 C 1.50699 * 126.04238 * 179.76887 * 25 4 3 27 27 S 1.70972 * 124.91366 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47098 * 89.99558 * 1 2 3 29 29 H 1.09000 * 109.47239 * 209.99474 * 1 2 3 30 30 H 1.09001 * 109.46989 * 329.99914 * 1 2 3 31 31 H 1.08994 * 109.46983 * 330.03376 * 5 4 3 32 32 H 1.08995 * 109.47390 * 210.02902 * 5 4 3 33 33 H 0.96994 * 119.99731 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47330 * 295.00112 * 11 9 8 35 35 H 1.09005 * 109.47124 * 175.00316 * 11 9 8 36 36 H 0.96999 * 119.99984 * 359.97438 * 12 11 9 37 37 H 0.97005 * 119.99715 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.46887 * 55.00133 * 21 9 8 39 39 H 1.08999 * 109.46778 * 174.99805 * 21 9 8 40 40 H 1.09010 * 109.47163 * 55.00408 * 22 21 9 41 41 H 1.09000 * 109.47195 * 60.00326 * 23 22 21 42 42 H 1.09007 * 109.47625 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47484 * 299.99900 * 23 22 21 44 44 H 1.09000 * 109.47183 * 59.99818 * 24 22 21 45 45 H 1.08997 * 109.47266 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.46837 * 299.99702 * 24 22 21 47 47 H 1.09000 * 109.47232 * 89.99200 * 26 25 4 48 48 H 1.09002 * 109.47052 * 209.99827 * 26 25 4 49 49 H 1.09001 * 109.46967 * 329.99828 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.8574 2.4067 1.4208 7 8 4.3454 1.8078 2.3428 8 7 5.7184 3.4141 1.6666 9 6 6.0354 3.7860 3.0477 10 1 5.1503 3.6581 3.6707 11 6 6.4833 5.2482 3.0921 12 7 5.4540 6.0930 2.4813 13 6 5.6355 7.4483 2.4076 14 1 6.5355 7.8949 2.8037 15 6 4.6604 8.2487 1.8284 16 7 4.8347 9.5514 1.7581 17 14 3.1003 7.4771 1.1501 18 1 2.0698 7.4235 2.2180 19 1 2.5966 8.2936 0.0167 20 1 3.3943 6.1007 0.6764 21 6 7.1611 2.8916 3.5710 22 6 6.6705 1.4443 3.6441 23 6 7.8306 0.5323 4.0477 24 6 5.5520 1.3367 4.6826 25 6 3.9354 -0.4007 -0.0041 26 6 5.3574 -0.8995 -0.0096 27 16 2.4856 -1.4020 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 4.0906 2.8789 -0.5140 32 1 5.4432 1.7220 -0.5137 33 1 6.1274 3.8932 0.9292 34 1 7.4177 5.3589 2.5418 35 1 6.6338 5.5508 4.1284 36 1 4.6438 5.6923 2.1291 37 1 4.1531 10.1107 1.3536 38 1 8.0160 2.9520 2.8975 39 1 7.4577 3.2254 4.5654 40 1 6.2911 1.1395 2.6687 41 1 8.2100 0.8370 5.0231 42 1 7.4813 -0.4990 4.0994 43 1 8.6274 0.6089 3.3079 44 1 4.7255 1.9865 4.3950 45 1 5.2028 0.3055 4.7349 46 1 5.9314 1.6414 5.6579 47 1 5.7034 -1.0225 1.0167 48 1 5.4042 -1.8582 -0.5262 49 1 5.9934 -0.1786 -0.5234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714917660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:57 Heat of formation + Delta-G solvation = 1.476770 kcal Electronic energy + Delta-G solvation = -28472.874947 eV Core-core repulsion = 24754.615164 eV Total energy + Delta-G solvation = -3718.259783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53672 -39.45854 -36.77990 -35.09869 -33.97233 -33.49981 -31.49849 -30.64788 -30.16529 -28.88295 -26.95898 -25.78883 -25.29752 -23.29048 -22.44199 -21.15864 -20.27755 -19.74393 -18.91721 -18.12002 -17.69725 -16.97988 -15.91420 -15.84922 -15.11821 -14.95450 -14.50580 -14.40684 -14.10698 -13.74800 -13.64967 -13.56688 -13.39702 -13.34646 -13.21348 -12.96402 -12.73403 -12.44168 -12.36059 -12.24954 -12.12625 -12.04271 -11.83965 -11.67603 -11.29320 -11.21689 -11.12693 -10.86069 -10.55153 -10.34585 -10.21289 -10.06705 -9.68626 -9.61644 -9.58093 -9.28934 -8.94364 -8.70665 -8.65689 -7.27196 -5.79253 -3.15328 0.60163 1.20661 1.58990 2.62423 2.84624 3.37580 3.42895 3.46513 3.50576 3.96921 4.58032 4.64020 4.79705 4.82839 4.84533 4.99536 5.09548 5.10010 5.11176 5.15188 5.23702 5.30529 5.45551 5.46235 5.49519 5.52883 5.59060 5.60911 5.68625 5.77795 5.78293 5.86424 5.95333 5.96256 6.03534 6.05774 6.09574 6.22601 6.36459 6.40739 6.57379 6.60137 6.76306 6.87148 7.70153 7.77518 7.96239 8.39371 8.47617 9.18545 9.90872 10.10282 11.38871 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004118 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.819333 B = 6797.707026 C = 9001.708553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.047 3.953 3 N -0.458 5.458 4 C 0.091 3.909 5 C -0.073 4.073 6 C 0.517 3.483 7 O -0.525 6.525 8 N -0.714 5.714 9 C 0.133 3.867 10 H 0.090 0.910 11 C 0.149 3.851 12 N -0.754 5.754 13 C -0.247 4.247 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.933 5.933 17 Si 0.883 3.117 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.121 4.121 22 C -0.092 4.092 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.210 4.210 26 C -0.074 4.074 27 S 0.103 5.897 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.403 0.597 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.363 0.637 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -25.977 -4.083 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.231 4.231 3 N -0.172 5.172 4 C -0.040 4.040 5 C -0.116 4.116 6 C 0.302 3.698 7 O -0.402 6.402 8 N -0.366 5.366 9 C 0.029 3.971 10 H 0.108 0.892 11 C 0.021 3.979 12 N -0.401 5.401 13 C -0.377 4.377 14 H 0.108 0.892 15 C -0.188 4.188 16 N -0.580 5.580 17 Si 0.713 3.287 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.160 4.160 22 C -0.110 4.110 23 C -0.203 4.203 24 C -0.194 4.194 25 C -0.331 4.331 26 C -0.133 4.133 27 S 0.358 5.642 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.238 0.762 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.593 -26.732 -3.376 26.951 hybrid contribution -0.415 0.652 -0.844 1.144 sum -1.008 -26.080 -4.220 26.438 Atomic orbital electron populations 1.20428 0.85301 1.04233 1.03700 1.26801 1.01519 0.90621 1.04171 1.66003 1.04453 1.31630 1.15081 1.19267 0.89665 0.92689 1.02401 1.20235 0.97946 0.97075 0.96332 1.20195 0.78887 0.80141 0.90575 1.90697 1.51323 1.52825 1.45318 1.46006 1.46160 1.35107 1.09353 1.21420 0.98726 0.94460 0.82541 0.89221 1.20939 0.92546 0.86809 0.97569 1.42696 1.20070 1.04620 1.72683 1.19043 1.04510 0.81020 1.33085 0.89164 1.24651 0.98120 0.95161 1.00902 1.69700 1.35302 1.02939 1.50089 0.86583 0.84764 0.78409 0.78907 1.21125 1.21706 1.20318 1.22003 0.97751 0.94819 1.01434 1.21132 0.95067 0.94273 1.00534 1.21868 0.98251 0.99255 1.00958 1.21817 0.99078 1.01509 0.97015 1.25522 1.00104 0.95477 1.11973 1.20249 0.88683 1.01267 1.03133 1.83742 0.97816 1.12859 1.69741 0.89716 0.90246 0.89197 0.87146 0.87502 0.76200 0.95027 0.94150 0.80374 0.93023 0.91824 0.91061 0.90712 0.93079 0.93341 0.93292 0.90669 0.94014 0.94287 0.90301 0.91229 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.46 36.01 0.38 -0.28 16 2 C 0.05 0.58 7.39 -13.46 -0.10 0.48 16 3 N -0.46 -6.91 10.53 -8.06 -0.08 -6.99 16 4 C 0.09 1.25 5.23 -84.22 -0.44 0.81 16 5 C -0.07 -0.92 5.88 -29.03 -0.17 -1.09 16 6 C 0.52 7.62 6.38 -10.98 -0.07 7.55 16 7 O -0.52 -8.99 10.99 5.56 0.06 -8.93 16 8 N -0.71 -10.25 4.47 -53.81 -0.24 -10.49 16 9 C 0.13 2.04 2.33 -67.93 -0.16 1.88 16 10 H 0.09 1.57 5.92 -51.93 -0.31 1.27 16 11 C 0.15 2.73 5.82 -4.05 -0.02 2.71 16 12 N -0.75 -17.52 5.24 -59.91 -0.31 -17.83 16 13 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 16 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 17 Si 0.88 22.57 27.74 -169.99 -4.71 17.86 16 18 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 21 C -0.12 -1.54 4.36 -26.73 -0.12 -1.65 16 22 C -0.09 -1.15 2.38 -90.63 -0.22 -1.37 16 23 C -0.15 -1.54 9.19 37.15 0.34 -1.20 16 24 C -0.14 -1.90 8.04 37.16 0.30 -1.60 16 25 C -0.21 -2.44 6.59 -35.92 -0.24 -2.67 16 26 C -0.07 -0.64 10.10 36.01 0.36 -0.27 16 27 S 0.10 1.07 23.18 -107.50 -2.49 -1.42 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.11 0.97 6.71 -51.93 -0.35 0.62 16 33 H 0.40 5.38 8.60 -40.82 -0.35 5.03 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.36 8.50 5.20 -40.82 -0.21 8.29 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.02 5.19 -51.92 -0.27 0.75 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.23 4.76 -51.93 -0.25 0.98 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -34.29 398.60 -9.43 -43.72 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.02 Total: 10.20 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.40 Total: -3.63 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.14 Total: -63.80 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.06 Total: -8.93 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.86 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.29 -9.43 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714917660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.196 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds