Wall clock time and date at job start Tue Mar 31 2020 22:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29019 * 124.91701 * 2 1 4 4 C 1.31779 * 117.12545 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.75299 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46733 * 90.02787 * 5 4 3 7 7 O 1.21281 * 119.99782 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99726 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99880 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47194 * 325.00351 * 9 8 6 11 11 C 1.52992 * 109.47240 * 205.00358 * 9 8 6 12 12 N 1.46499 * 109.47267 * 55.00209 * 11 9 8 13 13 C 1.36935 * 119.99938 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31614 * 119.99892 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99858 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99644 * 17 15 13 19 19 H 1.48494 * 109.46800 * 209.99692 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99394 * 17 15 13 21 21 C 1.53004 * 109.46876 * 85.00192 * 9 8 6 22 22 C 1.52997 * 109.47180 * 294.99855 * 21 9 8 23 23 C 1.52995 * 109.47079 * 174.99816 * 22 21 9 24 24 C 1.52996 * 109.47483 * 295.00226 * 22 21 9 25 25 C 1.33640 * 114.50223 * 0.23988 * 4 3 2 26 26 C 1.50699 * 126.04238 * 179.76887 * 25 4 3 27 27 S 1.70972 * 124.91366 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47098 * 89.99558 * 1 2 3 29 29 H 1.09000 * 109.47239 * 209.99474 * 1 2 3 30 30 H 1.09001 * 109.46989 * 329.99914 * 1 2 3 31 31 H 1.08994 * 109.46983 * 330.03376 * 5 4 3 32 32 H 1.08995 * 109.47390 * 210.02902 * 5 4 3 33 33 H 0.96994 * 119.99731 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47330 * 295.00112 * 11 9 8 35 35 H 1.09005 * 109.47124 * 175.00316 * 11 9 8 36 36 H 0.96999 * 119.99984 * 359.97438 * 12 11 9 37 37 H 0.97005 * 119.99715 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.46887 * 55.00133 * 21 9 8 39 39 H 1.08999 * 109.46778 * 174.99805 * 21 9 8 40 40 H 1.09010 * 109.47163 * 55.00408 * 22 21 9 41 41 H 1.09000 * 109.47195 * 60.00326 * 23 22 21 42 42 H 1.09007 * 109.47625 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47484 * 299.99900 * 23 22 21 44 44 H 1.09000 * 109.47183 * 59.99818 * 24 22 21 45 45 H 1.08997 * 109.47266 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.46837 * 299.99702 * 24 22 21 47 47 H 1.09000 * 109.47232 * 89.99200 * 26 25 4 48 48 H 1.09002 * 109.47052 * 209.99827 * 26 25 4 49 49 H 1.09001 * 109.46967 * 329.99828 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.8574 2.4067 1.4208 7 8 4.3454 1.8078 2.3428 8 7 5.7184 3.4141 1.6666 9 6 6.0354 3.7860 3.0477 10 1 5.1503 3.6581 3.6707 11 6 6.4833 5.2482 3.0921 12 7 5.4540 6.0930 2.4813 13 6 5.6355 7.4483 2.4076 14 1 6.5355 7.8949 2.8037 15 6 4.6604 8.2487 1.8284 16 7 4.8347 9.5514 1.7581 17 14 3.1003 7.4771 1.1501 18 1 2.0698 7.4235 2.2180 19 1 2.5966 8.2936 0.0167 20 1 3.3943 6.1007 0.6764 21 6 7.1611 2.8916 3.5710 22 6 6.6705 1.4443 3.6441 23 6 7.8306 0.5323 4.0477 24 6 5.5520 1.3367 4.6826 25 6 3.9354 -0.4007 -0.0041 26 6 5.3574 -0.8995 -0.0096 27 16 2.4856 -1.4020 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 4.0906 2.8789 -0.5140 32 1 5.4432 1.7220 -0.5137 33 1 6.1274 3.8932 0.9292 34 1 7.4177 5.3589 2.5418 35 1 6.6338 5.5508 4.1284 36 1 4.6438 5.6923 2.1291 37 1 4.1531 10.1107 1.3536 38 1 8.0160 2.9520 2.8975 39 1 7.4577 3.2254 4.5654 40 1 6.2911 1.1395 2.6687 41 1 8.2100 0.8370 5.0231 42 1 7.4813 -0.4990 4.0994 43 1 8.6274 0.6089 3.3079 44 1 4.7255 1.9865 4.3950 45 1 5.2028 0.3055 4.7349 46 1 5.9314 1.6414 5.6579 47 1 5.7034 -1.0225 1.0167 48 1 5.4042 -1.8582 -0.5262 49 1 5.9934 -0.1786 -0.5234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714917660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:56 Heat of formation + Delta-G solvation = -21.306682 kcal Electronic energy + Delta-G solvation = -28473.862911 eV Core-core repulsion = 24754.615164 eV Total energy + Delta-G solvation = -3719.247747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55891 -40.49974 -38.02363 -36.55510 -35.03007 -34.79715 -33.34479 -31.65586 -31.17869 -29.98926 -27.94632 -27.32139 -26.11906 -24.44554 -23.95215 -22.51955 -21.44305 -20.78744 -19.92484 -19.68589 -18.89422 -18.15926 -17.11655 -17.02059 -16.50763 -16.07672 -15.87696 -15.62184 -15.31975 -14.89967 -14.74523 -14.66058 -14.45339 -14.39791 -14.19725 -14.18296 -13.91119 -13.64705 -13.43055 -13.25569 -13.06841 -13.01673 -13.00844 -12.94601 -12.72586 -12.52879 -12.41354 -12.09337 -12.03326 -11.86374 -11.65715 -11.37574 -11.23376 -11.05939 -10.71824 -10.57884 -10.13938 -9.89244 -9.51446 -9.32672 -8.05666 -5.37977 -0.25020 0.40062 0.73169 1.32798 1.36523 1.41491 1.66651 1.73555 2.41269 2.43555 3.16189 3.27272 3.48447 3.77396 3.87250 4.01877 4.06005 4.09918 4.12209 4.15262 4.32436 4.35532 4.41255 4.44505 4.61385 4.62213 4.64565 4.70789 4.82047 4.87622 4.89172 4.92683 4.93611 4.95208 5.00612 5.08078 5.10409 5.17877 5.23957 5.29141 5.40241 5.58396 5.63184 5.67486 5.74912 6.18613 6.65090 6.83630 7.04987 7.35633 7.81175 7.98804 9.15800 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004118 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.819333 B = 6797.707026 C = 9001.708553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 N -0.503 5.503 4 C 0.062 3.938 5 C -0.069 4.069 6 C 0.516 3.484 7 O -0.550 6.550 8 N -0.712 5.712 9 C 0.145 3.855 10 H 0.066 0.934 11 C 0.148 3.852 12 N -0.756 5.756 13 C -0.229 4.229 14 H 0.065 0.935 15 C -0.054 4.054 16 N -0.980 5.980 17 Si 0.945 3.055 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.256 1.256 21 C -0.113 4.113 22 C -0.087 4.087 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.215 4.215 26 C -0.074 4.074 27 S 0.144 5.856 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.410 0.590 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.363 0.637 37 H 0.258 0.742 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -28.948 -4.819 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.250 4.250 3 N -0.218 5.218 4 C -0.069 4.069 5 C -0.111 4.111 6 C 0.302 3.698 7 O -0.429 6.429 8 N -0.365 5.365 9 C 0.040 3.960 10 H 0.084 0.916 11 C 0.021 3.979 12 N -0.402 5.402 13 C -0.360 4.360 14 H 0.083 0.917 15 C -0.246 4.246 16 N -0.630 5.630 17 Si 0.773 3.227 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.181 1.181 21 C -0.152 4.152 22 C -0.105 4.105 23 C -0.198 4.198 24 C -0.189 4.189 25 C -0.336 4.336 26 C -0.133 4.133 27 S 0.400 5.600 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.245 0.755 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.196 0.804 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.179 -29.756 -4.112 30.039 hybrid contribution -0.602 1.511 -0.534 1.712 sum -0.423 -28.244 -4.646 28.627 Atomic orbital electron populations 1.20569 0.83482 1.04723 1.04922 1.27355 1.02955 0.91074 1.03623 1.66019 1.05511 1.33454 1.16856 1.19466 0.89602 0.93732 1.04081 1.20262 0.99284 0.96819 0.94742 1.20587 0.78191 0.79656 0.91347 1.90693 1.52129 1.53682 1.46352 1.45971 1.46300 1.35174 1.09025 1.21183 0.98750 0.92954 0.83094 0.91560 1.21114 0.91786 0.87926 0.97053 1.42708 1.21251 1.03350 1.72916 1.19057 1.03017 0.83050 1.30881 0.91747 1.25325 1.01394 0.95537 1.02364 1.69850 1.36554 1.04506 1.52138 0.85575 0.80707 0.78531 0.77857 1.21777 1.21908 1.18077 1.21947 0.96993 0.94274 1.01983 1.21060 0.95334 0.94491 0.99628 1.21804 0.97567 0.98826 1.01560 1.21744 0.98754 1.00565 0.97850 1.25965 1.01894 0.95282 1.10430 1.20370 0.87027 1.02584 1.03353 1.83509 0.96608 1.11267 1.68666 0.88059 0.88063 0.90356 0.87884 0.84119 0.75468 0.93624 0.94317 0.80354 0.93323 0.90154 0.90460 0.91587 0.92598 0.92968 0.91997 0.93444 0.94350 0.93539 0.90623 0.89338 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.46 71.24 0.75 -0.50 16 2 C 0.03 0.65 7.39 88.52 0.65 1.30 16 3 N -0.50 -15.01 10.53 -179.40 -1.89 -16.90 16 4 C 0.06 1.64 5.23 41.53 0.22 1.86 16 5 C -0.07 -1.63 5.88 29.11 0.17 -1.46 16 6 C 0.52 14.63 6.38 87.66 0.56 15.19 16 7 O -0.55 -18.63 10.99 -3.03 -0.03 -18.67 16 8 N -0.71 -19.37 4.47 -442.54 -1.98 -21.35 16 9 C 0.15 4.28 2.33 44.99 0.10 4.38 16 10 H 0.07 2.32 5.92 -2.39 -0.01 2.30 16 11 C 0.15 5.24 5.82 86.38 0.50 5.74 16 12 N -0.76 -34.59 5.24 -343.45 -1.80 -36.39 16 13 C -0.23 -12.87 10.47 84.04 0.88 -11.99 16 14 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 15 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 16 N -0.98 -62.69 13.97 21.65 0.30 -62.39 16 17 Si 0.94 47.02 27.74 68.60 1.90 48.92 16 18 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 19 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 20 H -0.26 -11.67 6.52 99.48 0.65 -11.03 16 21 C -0.11 -2.62 4.36 30.59 0.13 -2.49 16 22 C -0.09 -2.00 2.38 -10.80 -0.03 -2.03 16 23 C -0.14 -2.55 9.19 71.98 0.66 -1.88 16 24 C -0.13 -3.54 8.04 71.98 0.58 -2.96 16 25 C -0.21 -4.59 6.59 24.64 0.16 -4.43 16 26 C -0.07 -1.07 10.10 71.24 0.72 -0.35 16 27 S 0.14 2.73 23.18 -56.49 -1.31 1.42 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.14 2.19 6.71 -2.39 -0.02 2.17 16 33 H 0.41 10.12 8.60 -92.71 -0.80 9.32 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.36 16.61 5.20 -92.71 -0.48 16.13 16 37 H 0.26 15.79 8.31 -92.70 -0.77 15.01 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.67 5.19 -2.38 -0.01 1.66 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.55 4.76 -2.39 -0.01 1.54 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 1.05 6.76 -2.39 -0.02 1.04 16 Total: -1.00 -75.32 398.60 1.35 -73.96 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.37 Total: 33.74 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.53 Total: -2.35 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -5.36 Total: -137.03 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.03 Total: -18.67 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.90 Total: 48.92 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -75.32 1.35 -73.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714917660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.654 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds