Wall clock time and date at job start Tue Mar 31 2020 22:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31789 * 122.74708 * 2 1 4 4 C 1.29025 * 117.12182 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.16864 * 359.72328 * 4 3 2 6 6 C 1.33639 * 122.75481 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.03207 * 359.97438 * 6 2 1 8 8 C 1.53002 * 109.47028 * 90.00222 * 7 6 2 9 9 C 1.50702 * 109.47016 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99825 * 180.27446 * 9 8 7 12 12 C 1.46499 * 120.00028 * 174.64599 * 11 9 8 13 13 H 1.09007 * 109.46928 * 37.90377 * 12 11 9 14 14 C 1.52993 * 109.47220 * 157.90490 * 12 11 9 15 15 N 1.46501 * 109.47145 * 304.99852 * 14 12 11 16 16 C 1.36944 * 119.99637 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99355 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00377 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99693 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47346 * 60.00002 * 20 18 16 22 22 H 1.48498 * 109.47031 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47070 * 300.00163 * 20 18 16 24 24 C 1.53003 * 109.46918 * 277.90571 * 12 11 9 25 25 C 1.52998 * 109.47024 * 174.13419 * 24 12 11 26 26 C 1.53000 * 109.47004 * 174.81881 * 25 24 12 27 27 C 1.52994 * 109.47446 * 294.82428 * 25 24 12 28 28 H 1.09004 * 109.46969 * 269.99920 * 1 2 3 29 29 H 1.09001 * 109.47438 * 29.99484 * 1 2 3 30 30 H 1.08999 * 109.47183 * 150.00012 * 1 2 3 31 31 H 1.08003 * 124.91569 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47237 * 329.99924 * 7 6 2 33 33 H 1.08999 * 109.46827 * 209.99708 * 7 6 2 34 34 H 1.09003 * 109.47355 * 59.99774 * 8 7 6 35 35 H 1.09005 * 109.47192 * 299.99790 * 8 7 6 36 36 H 0.97005 * 119.99750 * 354.64380 * 11 9 8 37 37 H 1.09002 * 109.47457 * 64.99776 * 14 12 11 38 38 H 1.09002 * 109.47416 * 184.99797 * 14 12 11 39 39 H 0.97000 * 120.00112 * 0.02562 * 15 14 12 40 40 H 0.97007 * 119.99807 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.47014 * 294.13815 * 24 12 11 42 42 H 1.08998 * 109.46968 * 54.14229 * 24 12 11 43 43 H 1.09006 * 109.47023 * 54.82295 * 25 24 12 44 44 H 1.08994 * 109.46725 * 60.00703 * 26 25 24 45 45 H 1.09000 * 109.46737 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.47412 * 300.00459 * 26 25 24 47 47 H 1.08998 * 109.47500 * 65.52401 * 27 25 24 48 48 H 1.08998 * 109.47179 * 185.52496 * 27 25 24 49 49 H 1.08999 * 109.47138 * 305.52314 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 -0.0005 5 16 3.9333 -0.6730 0.0067 6 6 2.2300 -1.1239 -0.0005 7 6 1.6847 -2.5288 -0.0006 8 6 1.4997 -3.0040 -1.4431 9 6 0.9550 -4.4091 -1.4432 10 8 0.7359 -4.9745 -0.3930 11 7 0.7161 -5.0391 -2.6105 12 6 0.2987 -6.4434 -2.6129 13 1 -0.3769 -6.6230 -1.7765 14 6 -0.4199 -6.7596 -3.9260 15 7 -1.5284 -5.8205 -4.1145 16 6 -2.3197 -5.9100 -5.2286 17 1 -2.1268 -6.6732 -5.9679 18 6 -3.3697 -5.0198 -5.4074 19 7 -3.6043 -4.0894 -4.5065 20 14 -4.4496 -5.1424 -6.9267 21 1 -5.1001 -6.4768 -6.9654 22 1 -5.4909 -4.0847 -6.8805 23 1 -3.6158 -4.9628 -8.1424 24 6 1.5298 -7.3416 -2.4761 25 6 1.0848 -8.7982 -2.3316 26 6 2.3143 -9.7088 -2.3246 27 6 0.3162 -8.9690 -1.0198 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8027 -0.0002 32 1 0.7238 -2.5456 0.5136 33 1 2.3832 -3.1896 0.5128 34 1 2.4607 -2.9871 -1.9573 35 1 0.8013 -2.3431 -1.9566 36 1 0.8205 -4.5627 -3.4490 37 1 0.2809 -6.6657 -4.7555 38 1 -0.8080 -7.7776 -3.8918 39 1 -1.7013 -5.1348 -3.4506 40 1 -4.3379 -3.4671 -4.6318 41 1 2.1548 -7.2388 -3.3631 42 1 2.0987 -7.0464 -1.5944 43 1 0.4394 -9.0657 -3.1683 44 1 2.9596 -9.4414 -1.4879 45 1 1.9972 -10.7466 -2.2221 46 1 2.8619 -9.5871 -3.2591 47 1 -0.6101 -8.3961 -1.0641 48 1 0.0843 -10.0234 -0.8691 49 1 0.9266 -8.6093 -0.1915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:58 Heat of formation + Delta-G solvation = -12.669035 kcal Electronic energy + Delta-G solvation = -27292.622992 eV Core-core repulsion = 23573.749801 eV Total energy + Delta-G solvation = -3718.873191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15186 -39.60135 -37.32111 -34.87664 -34.38262 -33.49945 -31.37591 -30.84963 -29.20430 -27.60617 -27.02637 -25.58123 -25.12666 -23.66678 -22.65380 -21.29981 -20.06904 -19.40620 -18.97253 -18.27876 -17.30312 -16.76952 -15.93485 -15.86666 -15.25739 -15.17630 -14.89966 -14.46559 -14.03777 -13.79109 -13.64825 -13.57782 -13.24351 -13.16382 -12.79530 -12.77530 -12.64801 -12.45071 -12.22312 -12.18740 -12.08328 -11.89293 -11.70687 -11.55546 -11.10173 -10.94463 -10.88503 -10.79192 -10.76051 -10.46197 -10.28518 -10.03348 -9.82456 -9.75854 -9.64279 -9.35097 -8.93110 -8.83644 -8.62256 -6.98299 -5.80660 -3.10325 0.53155 1.18936 1.57204 2.62520 2.91753 3.40911 3.45796 3.46772 3.49009 4.07482 4.54678 4.64287 4.83508 4.93987 4.97238 5.01188 5.01651 5.08805 5.20758 5.27335 5.41575 5.50314 5.53589 5.56546 5.57912 5.70753 5.73192 5.77125 5.78526 5.83911 5.90551 5.92585 5.94844 6.00498 6.11291 6.17473 6.21229 6.22099 6.34527 6.44250 6.50373 6.58551 6.72387 6.96422 7.55822 7.65201 7.86722 8.37317 8.53450 9.49225 10.04970 10.40475 11.41539 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007792 B = 0.003219 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.566956 B = 8695.348684 C =11618.403568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.061 3.939 3 N -0.466 5.466 4 C 0.014 3.986 5 S 0.110 5.890 6 C -0.211 4.211 7 C -0.024 4.024 8 C -0.138 4.138 9 C 0.516 3.484 10 O -0.548 6.548 11 N -0.712 5.712 12 C 0.135 3.865 13 H 0.090 0.910 14 C 0.145 3.855 15 N -0.731 5.731 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.197 0.803 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.404 0.596 37 H 0.022 0.978 38 H 0.035 0.965 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.136 2.516 9.066 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 N -0.180 5.180 4 C -0.284 4.284 5 S 0.363 5.637 6 C -0.332 4.332 7 C -0.064 4.064 8 C -0.179 4.179 9 C 0.302 3.698 10 O -0.426 6.426 11 N -0.362 5.362 12 C 0.031 3.969 13 H 0.108 0.892 14 C 0.017 3.983 15 N -0.376 5.376 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.157 4.157 25 C -0.116 4.116 26 C -0.201 4.201 27 C -0.204 4.204 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.214 0.786 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.239 0.761 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.666 2.107 9.666 20.247 hybrid contribution -1.386 0.642 -1.158 1.916 sum 16.280 2.749 8.508 18.574 Atomic orbital electron populations 1.20430 0.86719 1.03946 1.03120 1.20318 0.98440 0.86056 1.02165 1.66188 1.05020 1.31732 1.15022 1.28246 0.95261 0.99902 1.04968 1.84004 1.07556 1.03815 1.68289 1.25775 0.94670 1.00846 1.11903 1.19761 1.02519 0.87826 0.96325 1.21682 1.03191 0.94706 0.98283 1.20434 0.77643 0.87751 0.83978 1.90674 1.52619 1.68039 1.31303 1.46008 1.68574 1.12920 1.08719 1.21323 0.95430 0.79686 1.00502 0.89244 1.21002 0.90284 0.94514 0.92532 1.42346 1.32908 1.36667 1.25666 1.19163 1.07626 1.12336 0.98371 0.91247 1.24732 0.99218 0.98234 0.98479 1.69650 1.32641 1.20315 1.35275 0.86283 0.80245 0.77067 0.82645 1.21264 1.21676 1.21281 1.21965 0.97703 0.94284 1.01781 1.21124 0.97037 0.94451 0.98952 1.21823 0.97783 0.99145 1.01398 1.21862 1.00659 1.01006 0.96913 0.90572 0.90482 0.90067 0.78607 0.88603 0.89823 0.89033 0.88269 0.76066 0.95979 0.94742 0.78020 0.93427 0.91987 0.91817 0.90467 0.93037 0.92905 0.92907 0.92103 0.93181 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.82 36.01 0.35 -0.56 16 2 C 0.06 0.74 6.74 -84.22 -0.57 0.17 16 3 N -0.47 -5.73 10.53 -11.90 -0.13 -5.85 16 4 C 0.01 0.13 12.23 51.58 0.63 0.77 16 5 S 0.11 0.99 23.22 -107.50 -2.50 -1.50 16 6 C -0.21 -2.34 5.84 -35.92 -0.21 -2.55 16 7 C -0.02 -0.27 4.44 -27.88 -0.12 -0.40 16 8 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16 9 C 0.52 7.75 7.72 -10.98 -0.08 7.66 16 10 O -0.55 -9.82 15.66 5.56 0.09 -9.73 16 11 N -0.71 -10.85 4.54 -53.81 -0.24 -11.09 16 12 C 0.14 2.19 2.08 -67.93 -0.14 2.05 16 13 H 0.09 1.66 5.89 -51.93 -0.31 1.35 16 14 C 0.14 2.73 5.46 -4.04 -0.02 2.71 16 15 N -0.73 -17.64 5.43 -59.91 -0.33 -17.97 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 20 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.12 -1.59 4.40 -26.73 -0.12 -1.71 16 25 C -0.10 -1.21 2.80 -90.62 -0.25 -1.46 16 26 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 27 C -0.15 -1.90 8.82 37.15 0.33 -1.57 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16 31 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.10 1.16 7.39 -51.93 -0.38 0.78 16 33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.16 7.98 -51.93 -0.41 0.75 16 36 H 0.40 5.93 8.58 -40.82 -0.35 5.58 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.03 0.66 6.72 -51.93 -0.35 0.31 16 39 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16 43 H 0.08 1.02 6.48 -51.93 -0.34 0.68 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.12 15.07 6.18 6.18 Total: -1.00 -31.97 410.12 -9.69 -41.66 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.20 Total: 13.02 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.27 Total: -4.95 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.03 Total: -61.63 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.97 -9.69 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.996 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds