Wall clock time and date at job start Tue Mar 31 2020 22:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31789 * 122.74708 * 2 1
4 4 C 1.29025 * 117.12182 * 180.02562 * 3 2 1
5 5 S 1.70975 * 110.16864 * 359.72328 * 4 3 2
6 6 C 1.33639 * 122.75481 * 180.02562 * 2 1 3
7 7 C 1.50702 * 126.03207 * 359.97438 * 6 2 1
8 8 C 1.53002 * 109.47028 * 90.00222 * 7 6 2
9 9 C 1.50702 * 109.47016 * 179.97438 * 8 7 6
10 10 O 1.21274 * 119.99906 * 0.02562 * 9 8 7
11 11 N 1.34779 * 119.99825 * 180.27446 * 9 8 7
12 12 C 1.46499 * 120.00028 * 174.64599 * 11 9 8
13 13 H 1.09007 * 109.46928 * 37.90377 * 12 11 9
14 14 C 1.52993 * 109.47220 * 157.90490 * 12 11 9
15 15 N 1.46501 * 109.47145 * 304.99852 * 14 12 11
16 16 C 1.36944 * 119.99637 * 179.97438 * 15 14 12
17 17 H 1.07994 * 120.00011 * 0.02562 * 16 15 14
18 18 C 1.38813 * 119.99355 * 180.02562 * 16 15 14
19 19 N 1.31614 * 120.00377 * 0.02562 * 18 16 15
20 20 Si 1.86805 * 119.99693 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47346 * 60.00002 * 20 18 16
22 22 H 1.48498 * 109.47031 * 180.02562 * 20 18 16
23 23 H 1.48506 * 109.47070 * 300.00163 * 20 18 16
24 24 C 1.53003 * 109.46918 * 277.90571 * 12 11 9
25 25 C 1.52998 * 109.47024 * 174.13419 * 24 12 11
26 26 C 1.53000 * 109.47004 * 174.81881 * 25 24 12
27 27 C 1.52994 * 109.47446 * 294.82428 * 25 24 12
28 28 H 1.09004 * 109.46969 * 269.99920 * 1 2 3
29 29 H 1.09001 * 109.47438 * 29.99484 * 1 2 3
30 30 H 1.08999 * 109.47183 * 150.00012 * 1 2 3
31 31 H 1.08003 * 124.91569 * 180.02562 * 4 3 2
32 32 H 1.09003 * 109.47237 * 329.99924 * 7 6 2
33 33 H 1.08999 * 109.46827 * 209.99708 * 7 6 2
34 34 H 1.09003 * 109.47355 * 59.99774 * 8 7 6
35 35 H 1.09005 * 109.47192 * 299.99790 * 8 7 6
36 36 H 0.97005 * 119.99750 * 354.64380 * 11 9 8
37 37 H 1.09002 * 109.47457 * 64.99776 * 14 12 11
38 38 H 1.09002 * 109.47416 * 184.99797 * 14 12 11
39 39 H 0.97000 * 120.00112 * 0.02562 * 15 14 12
40 40 H 0.97007 * 119.99807 * 179.97438 * 19 18 16
41 41 H 1.08994 * 109.47014 * 294.13815 * 24 12 11
42 42 H 1.08998 * 109.46968 * 54.14229 * 24 12 11
43 43 H 1.09006 * 109.47023 * 54.82295 * 25 24 12
44 44 H 1.08994 * 109.46725 * 60.00703 * 26 25 24
45 45 H 1.09000 * 109.46737 * 180.02562 * 26 25 24
46 46 H 1.08997 * 109.47412 * 300.00459 * 26 25 24
47 47 H 1.08998 * 109.47500 * 65.52401 * 27 25 24
48 48 H 1.08998 * 109.47179 * 185.52496 * 27 25 24
49 49 H 1.08999 * 109.47138 * 305.52314 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2199 1.1084 0.0000
4 6 3.5039 0.9820 -0.0005
5 16 3.9333 -0.6730 0.0067
6 6 2.2300 -1.1239 -0.0005
7 6 1.6847 -2.5288 -0.0006
8 6 1.4997 -3.0040 -1.4431
9 6 0.9550 -4.4091 -1.4432
10 8 0.7359 -4.9745 -0.3930
11 7 0.7161 -5.0391 -2.6105
12 6 0.2987 -6.4434 -2.6129
13 1 -0.3769 -6.6230 -1.7765
14 6 -0.4199 -6.7596 -3.9260
15 7 -1.5284 -5.8205 -4.1145
16 6 -2.3197 -5.9100 -5.2286
17 1 -2.1268 -6.6732 -5.9679
18 6 -3.3697 -5.0198 -5.4074
19 7 -3.6043 -4.0894 -4.5065
20 14 -4.4496 -5.1424 -6.9267
21 1 -5.1001 -6.4768 -6.9654
22 1 -5.4909 -4.0847 -6.8805
23 1 -3.6158 -4.9628 -8.1424
24 6 1.5298 -7.3416 -2.4761
25 6 1.0848 -8.7982 -2.3316
26 6 2.3143 -9.7088 -2.3246
27 6 0.3162 -8.9690 -1.0198
28 1 -0.3633 0.0000 1.0277
29 1 -0.3634 0.8900 -0.5137
30 1 -0.3633 -0.8900 -0.5138
31 1 4.2059 1.8027 -0.0002
32 1 0.7238 -2.5456 0.5136
33 1 2.3832 -3.1896 0.5128
34 1 2.4607 -2.9871 -1.9573
35 1 0.8013 -2.3431 -1.9566
36 1 0.8205 -4.5627 -3.4490
37 1 0.2809 -6.6657 -4.7555
38 1 -0.8080 -7.7776 -3.8918
39 1 -1.7013 -5.1348 -3.4506
40 1 -4.3379 -3.4671 -4.6318
41 1 2.1548 -7.2388 -3.3631
42 1 2.0987 -7.0464 -1.5944
43 1 0.4394 -9.0657 -3.1683
44 1 2.9596 -9.4414 -1.4879
45 1 1.9972 -10.7466 -2.2221
46 1 2.8619 -9.5871 -3.2591
47 1 -0.6101 -8.3961 -1.0641
48 1 0.0843 -10.0234 -0.8691
49 1 0.9266 -8.6093 -0.1915
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715390500.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:58
Heat of formation + Delta-G solvation = -12.669035 kcal
Electronic energy + Delta-G solvation = -27292.622992 eV
Core-core repulsion = 23573.749801 eV
Total energy + Delta-G solvation = -3718.873191 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.15186 -39.60135 -37.32111 -34.87664 -34.38262 -33.49945 -31.37591 -30.84963
-29.20430 -27.60617 -27.02637 -25.58123 -25.12666 -23.66678 -22.65380 -21.29981
-20.06904 -19.40620 -18.97253 -18.27876 -17.30312 -16.76952 -15.93485 -15.86666
-15.25739 -15.17630 -14.89966 -14.46559 -14.03777 -13.79109 -13.64825 -13.57782
-13.24351 -13.16382 -12.79530 -12.77530 -12.64801 -12.45071 -12.22312 -12.18740
-12.08328 -11.89293 -11.70687 -11.55546 -11.10173 -10.94463 -10.88503 -10.79192
-10.76051 -10.46197 -10.28518 -10.03348 -9.82456 -9.75854 -9.64279 -9.35097
-8.93110 -8.83644 -8.62256 -6.98299 -5.80660 -3.10325 0.53155 1.18936
1.57204 2.62520 2.91753 3.40911 3.45796 3.46772 3.49009 4.07482
4.54678 4.64287 4.83508 4.93987 4.97238 5.01188 5.01651 5.08805
5.20758 5.27335 5.41575 5.50314 5.53589 5.56546 5.57912 5.70753
5.73192 5.77125 5.78526 5.83911 5.90551 5.92585 5.94844 6.00498
6.11291 6.17473 6.21229 6.22099 6.34527 6.44250 6.50373 6.58551
6.72387 6.96422 7.55822 7.65201 7.86722 8.37317 8.53450 9.49225
10.04970 10.40475 11.41539
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.007792 B = 0.003219 C = 0.002409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3592.566956 B = 8695.348684 C =11618.403568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.061 3.939
3 N -0.466 5.466
4 C 0.014 3.986
5 S 0.110 5.890
6 C -0.211 4.211
7 C -0.024 4.024
8 C -0.138 4.138
9 C 0.516 3.484
10 O -0.548 6.548
11 N -0.712 5.712
12 C 0.135 3.865
13 H 0.090 0.910
14 C 0.145 3.855
15 N -0.731 5.731
16 C -0.244 4.244
17 H 0.070 0.930
18 C -0.010 4.010
19 N -0.931 5.931
20 Si 0.907 3.093
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.286 1.286
24 C -0.118 4.118
25 C -0.097 4.097
26 C -0.144 4.144
27 C -0.147 4.147
28 H 0.076 0.924
29 H 0.076 0.924
30 H 0.081 0.919
31 H 0.197 0.803
32 H 0.096 0.904
33 H 0.083 0.917
34 H 0.091 0.909
35 H 0.099 0.901
36 H 0.404 0.596
37 H 0.022 0.978
38 H 0.035 0.965
39 H 0.386 0.614
40 H 0.256 0.744
41 H 0.061 0.939
42 H 0.063 0.937
43 H 0.077 0.923
44 H 0.050 0.950
45 H 0.052 0.948
46 H 0.052 0.948
47 H 0.060 0.940
48 H 0.049 0.951
49 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.136 2.516 9.066 19.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.070 4.070
3 N -0.180 5.180
4 C -0.284 4.284
5 S 0.363 5.637
6 C -0.332 4.332
7 C -0.064 4.064
8 C -0.179 4.179
9 C 0.302 3.698
10 O -0.426 6.426
11 N -0.362 5.362
12 C 0.031 3.969
13 H 0.108 0.892
14 C 0.017 3.983
15 N -0.376 5.376
16 C -0.375 4.375
17 H 0.088 0.912
18 C -0.207 4.207
19 N -0.579 5.579
20 Si 0.738 3.262
21 H -0.213 1.213
22 H -0.217 1.217
23 H -0.213 1.213
24 C -0.157 4.157
25 C -0.116 4.116
26 C -0.201 4.201
27 C -0.204 4.204
28 H 0.094 0.906
29 H 0.095 0.905
30 H 0.099 0.901
31 H 0.214 0.786
32 H 0.114 0.886
33 H 0.102 0.898
34 H 0.110 0.890
35 H 0.117 0.883
36 H 0.239 0.761
37 H 0.040 0.960
38 H 0.053 0.947
39 H 0.220 0.780
40 H 0.066 0.934
41 H 0.080 0.920
42 H 0.082 0.918
43 H 0.095 0.905
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.071 0.929
47 H 0.079 0.921
48 H 0.068 0.932
49 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 17.666 2.107 9.666 20.247
hybrid contribution -1.386 0.642 -1.158 1.916
sum 16.280 2.749 8.508 18.574
Atomic orbital electron populations
1.20430 0.86719 1.03946 1.03120 1.20318 0.98440 0.86056 1.02165
1.66188 1.05020 1.31732 1.15022 1.28246 0.95261 0.99902 1.04968
1.84004 1.07556 1.03815 1.68289 1.25775 0.94670 1.00846 1.11903
1.19761 1.02519 0.87826 0.96325 1.21682 1.03191 0.94706 0.98283
1.20434 0.77643 0.87751 0.83978 1.90674 1.52619 1.68039 1.31303
1.46008 1.68574 1.12920 1.08719 1.21323 0.95430 0.79686 1.00502
0.89244 1.21002 0.90284 0.94514 0.92532 1.42346 1.32908 1.36667
1.25666 1.19163 1.07626 1.12336 0.98371 0.91247 1.24732 0.99218
0.98234 0.98479 1.69650 1.32641 1.20315 1.35275 0.86283 0.80245
0.77067 0.82645 1.21264 1.21676 1.21281 1.21965 0.97703 0.94284
1.01781 1.21124 0.97037 0.94451 0.98952 1.21823 0.97783 0.99145
1.01398 1.21862 1.00659 1.01006 0.96913 0.90572 0.90482 0.90067
0.78607 0.88603 0.89823 0.89033 0.88269 0.76066 0.95979 0.94742
0.78020 0.93427 0.91987 0.91817 0.90467 0.93037 0.92905 0.92907
0.92103 0.93181 0.92822
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.91 9.82 36.01 0.35 -0.56 16
2 C 0.06 0.74 6.74 -84.22 -0.57 0.17 16
3 N -0.47 -5.73 10.53 -11.90 -0.13 -5.85 16
4 C 0.01 0.13 12.23 51.58 0.63 0.77 16
5 S 0.11 0.99 23.22 -107.50 -2.50 -1.50 16
6 C -0.21 -2.34 5.84 -35.92 -0.21 -2.55 16
7 C -0.02 -0.27 4.44 -27.88 -0.12 -0.40 16
8 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16
9 C 0.52 7.75 7.72 -10.98 -0.08 7.66 16
10 O -0.55 -9.82 15.66 5.56 0.09 -9.73 16
11 N -0.71 -10.85 4.54 -53.81 -0.24 -11.09 16
12 C 0.14 2.19 2.08 -67.93 -0.14 2.05 16
13 H 0.09 1.66 5.89 -51.93 -0.31 1.35 16
14 C 0.14 2.73 5.46 -4.04 -0.02 2.71 16
15 N -0.73 -17.64 5.43 -59.91 -0.33 -17.97 16
16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16
17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16
19 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16
20 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16
21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
24 C -0.12 -1.59 4.40 -26.73 -0.12 -1.71 16
25 C -0.10 -1.21 2.80 -90.62 -0.25 -1.46 16
26 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16
27 C -0.15 -1.90 8.82 37.15 0.33 -1.57 16
28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
30 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16
31 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16
32 H 0.10 1.16 7.39 -51.93 -0.38 0.78 16
33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16
34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.10 1.16 7.98 -51.93 -0.41 0.75 16
36 H 0.40 5.93 8.58 -40.82 -0.35 5.58 16
37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.03 0.66 6.72 -51.93 -0.35 0.31 16
39 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16
40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16
43 H 0.08 1.02 6.48 -51.93 -0.34 0.68 16
44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16
48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 410.12 15.07 6.18 6.18
Total: -1.00 -31.97 410.12 -9.69 -41.66
By element:
Atomic # 1 Polarization: 21.21 SS G_CDS: -8.20 Total: 13.02 kcal
Atomic # 6 Polarization: -4.68 SS G_CDS: -0.27 Total: -4.95 kcal
Atomic # 7 Polarization: -61.66 SS G_CDS: 0.03 Total: -61.63 kcal
Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal
Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.50 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -31.97 -9.69 -41.66 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715390500.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.996 kcal
(2) G-P(sol) polarization free energy of solvation -31.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds