Wall clock time and date at job start Tue Mar 31 2020 22:39:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31789 * 122.74708 * 2 1
4 4 C 1.29025 * 117.12182 * 180.02562 * 3 2 1
5 5 S 1.70975 * 110.16864 * 359.72328 * 4 3 2
6 6 C 1.33639 * 122.75481 * 180.02562 * 2 1 3
7 7 C 1.50702 * 126.03207 * 359.97438 * 6 2 1
8 8 C 1.53002 * 109.47028 * 90.00222 * 7 6 2
9 9 C 1.50702 * 109.47016 * 179.97438 * 8 7 6
10 10 O 1.21274 * 119.99906 * 0.02562 * 9 8 7
11 11 N 1.34779 * 119.99825 * 180.27446 * 9 8 7
12 12 C 1.46499 * 120.00028 * 174.64599 * 11 9 8
13 13 H 1.09007 * 109.46928 * 37.90377 * 12 11 9
14 14 C 1.52993 * 109.47220 * 157.90490 * 12 11 9
15 15 N 1.46501 * 109.47145 * 304.99852 * 14 12 11
16 16 C 1.36944 * 119.99637 * 179.97438 * 15 14 12
17 17 H 1.07994 * 120.00011 * 0.02562 * 16 15 14
18 18 C 1.38813 * 119.99355 * 180.02562 * 16 15 14
19 19 N 1.31614 * 120.00377 * 0.02562 * 18 16 15
20 20 Si 1.86805 * 119.99693 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47346 * 60.00002 * 20 18 16
22 22 H 1.48498 * 109.47031 * 180.02562 * 20 18 16
23 23 H 1.48506 * 109.47070 * 300.00163 * 20 18 16
24 24 C 1.53003 * 109.46918 * 277.90571 * 12 11 9
25 25 C 1.52998 * 109.47024 * 174.13419 * 24 12 11
26 26 C 1.53000 * 109.47004 * 174.81881 * 25 24 12
27 27 C 1.52994 * 109.47446 * 294.82428 * 25 24 12
28 28 H 1.09004 * 109.46969 * 269.99920 * 1 2 3
29 29 H 1.09001 * 109.47438 * 29.99484 * 1 2 3
30 30 H 1.08999 * 109.47183 * 150.00012 * 1 2 3
31 31 H 1.08003 * 124.91569 * 180.02562 * 4 3 2
32 32 H 1.09003 * 109.47237 * 329.99924 * 7 6 2
33 33 H 1.08999 * 109.46827 * 209.99708 * 7 6 2
34 34 H 1.09003 * 109.47355 * 59.99774 * 8 7 6
35 35 H 1.09005 * 109.47192 * 299.99790 * 8 7 6
36 36 H 0.97005 * 119.99750 * 354.64380 * 11 9 8
37 37 H 1.09002 * 109.47457 * 64.99776 * 14 12 11
38 38 H 1.09002 * 109.47416 * 184.99797 * 14 12 11
39 39 H 0.97000 * 120.00112 * 0.02562 * 15 14 12
40 40 H 0.97007 * 119.99807 * 179.97438 * 19 18 16
41 41 H 1.08994 * 109.47014 * 294.13815 * 24 12 11
42 42 H 1.08998 * 109.46968 * 54.14229 * 24 12 11
43 43 H 1.09006 * 109.47023 * 54.82295 * 25 24 12
44 44 H 1.08994 * 109.46725 * 60.00703 * 26 25 24
45 45 H 1.09000 * 109.46737 * 180.02562 * 26 25 24
46 46 H 1.08997 * 109.47412 * 300.00459 * 26 25 24
47 47 H 1.08998 * 109.47500 * 65.52401 * 27 25 24
48 48 H 1.08998 * 109.47179 * 185.52496 * 27 25 24
49 49 H 1.08999 * 109.47138 * 305.52314 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2199 1.1084 0.0000
4 6 3.5039 0.9820 -0.0005
5 16 3.9333 -0.6730 0.0067
6 6 2.2300 -1.1239 -0.0005
7 6 1.6847 -2.5288 -0.0006
8 6 1.4997 -3.0040 -1.4431
9 6 0.9550 -4.4091 -1.4432
10 8 0.7359 -4.9745 -0.3930
11 7 0.7161 -5.0391 -2.6105
12 6 0.2987 -6.4434 -2.6129
13 1 -0.3769 -6.6230 -1.7765
14 6 -0.4199 -6.7596 -3.9260
15 7 -1.5284 -5.8205 -4.1145
16 6 -2.3197 -5.9100 -5.2286
17 1 -2.1268 -6.6732 -5.9679
18 6 -3.3697 -5.0198 -5.4074
19 7 -3.6043 -4.0894 -4.5065
20 14 -4.4496 -5.1424 -6.9267
21 1 -5.1001 -6.4768 -6.9654
22 1 -5.4909 -4.0847 -6.8805
23 1 -3.6158 -4.9628 -8.1424
24 6 1.5298 -7.3416 -2.4761
25 6 1.0848 -8.7982 -2.3316
26 6 2.3143 -9.7088 -2.3246
27 6 0.3162 -8.9690 -1.0198
28 1 -0.3633 0.0000 1.0277
29 1 -0.3634 0.8900 -0.5137
30 1 -0.3633 -0.8900 -0.5138
31 1 4.2059 1.8027 -0.0002
32 1 0.7238 -2.5456 0.5136
33 1 2.3832 -3.1896 0.5128
34 1 2.4607 -2.9871 -1.9573
35 1 0.8013 -2.3431 -1.9566
36 1 0.8205 -4.5627 -3.4490
37 1 0.2809 -6.6657 -4.7555
38 1 -0.8080 -7.7776 -3.8918
39 1 -1.7013 -5.1348 -3.4506
40 1 -4.3379 -3.4671 -4.6318
41 1 2.1548 -7.2388 -3.3631
42 1 2.0987 -7.0464 -1.5944
43 1 0.4394 -9.0657 -3.1683
44 1 2.9596 -9.4414 -1.4879
45 1 1.9972 -10.7466 -2.2221
46 1 2.8619 -9.5871 -3.2591
47 1 -0.6101 -8.3961 -1.0641
48 1 0.0843 -10.0234 -0.8691
49 1 0.9266 -8.6093 -0.1915
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715390500.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:57
Heat of formation + Delta-G solvation = -32.440916 kcal
Electronic energy + Delta-G solvation = -27293.480365 eV
Core-core repulsion = 23573.749801 eV
Total energy + Delta-G solvation = -3719.730564 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.13236 -40.70578 -38.56271 -36.34564 -35.36252 -35.05533 -32.99016 -31.98485
-30.54879 -28.54960 -28.00106 -27.20763 -25.98021 -24.78613 -24.27080 -22.55720
-21.28757 -20.57503 -19.81592 -19.18220 -19.06845 -18.05455 -17.24684 -16.92062
-16.59202 -16.22281 -16.01843 -15.81589 -15.31462 -15.08616 -15.00063 -14.69990
-14.47619 -14.28273 -14.12803 -13.95168 -13.51801 -13.44027 -13.40368 -13.27497
-13.15408 -13.04902 -12.93458 -12.72573 -12.62431 -12.48776 -12.24880 -12.02086
-11.88823 -11.82034 -11.75321 -11.53887 -11.34517 -10.99046 -10.80628 -10.59756
-10.18488 -9.91278 -9.64521 -8.99263 -7.93284 -5.22466 -0.25220 0.43388
0.79566 1.48836 1.50870 1.57016 1.70495 1.78577 2.29689 2.56940
3.34067 3.40895 3.62631 3.77434 3.90616 3.92948 4.01626 4.07862
4.16806 4.21974 4.25257 4.30397 4.37373 4.46796 4.56357 4.61324
4.70509 4.77041 4.80550 4.83139 4.91043 4.92062 4.96495 5.01230
5.01869 5.04779 5.06173 5.14217 5.19596 5.34852 5.36738 5.49492
5.50633 5.54165 5.65745 6.27340 6.63328 6.76919 7.31264 7.35055
8.08582 8.32682 9.29334
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.007792 B = 0.003219 C = 0.002409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3592.566956 B = 8695.348684 C =11618.403568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.047 3.953
3 N -0.501 5.501
4 C 0.018 3.982
5 S 0.155 5.845
6 C -0.229 4.229
7 C -0.016 4.016
8 C -0.127 4.127
9 C 0.514 3.486
10 O -0.580 6.580
11 N -0.712 5.712
12 C 0.145 3.855
13 H 0.062 0.938
14 C 0.148 3.852
15 N -0.742 5.742
16 C -0.245 4.245
17 H 0.077 0.923
18 C -0.070 4.070
19 N -0.966 5.966
20 Si 0.970 3.030
21 H -0.281 1.281
22 H -0.298 1.298
23 H -0.276 1.276
24 C -0.106 4.106
25 C -0.097 4.097
26 C -0.139 4.139
27 C -0.145 4.145
28 H 0.081 0.919
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.230 0.770
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.116 0.884
35 H 0.099 0.901
36 H 0.408 0.592
37 H 0.036 0.964
38 H 0.036 0.964
39 H 0.374 0.626
40 H 0.250 0.750
41 H 0.077 0.923
42 H 0.060 0.940
43 H 0.070 0.930
44 H 0.055 0.945
45 H 0.062 0.938
46 H 0.061 0.939
47 H 0.035 0.965
48 H 0.064 0.936
49 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.360 2.029 8.207 21.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.084 4.084
3 N -0.215 5.215
4 C -0.279 4.279
5 S 0.409 5.591
6 C -0.350 4.350
7 C -0.056 4.056
8 C -0.168 4.168
9 C 0.301 3.699
10 O -0.460 6.460
11 N -0.362 5.362
12 C 0.040 3.960
13 H 0.080 0.920
14 C 0.021 3.979
15 N -0.385 5.385
16 C -0.377 4.377
17 H 0.095 0.905
18 C -0.263 4.263
19 N -0.616 5.616
20 Si 0.799 3.201
21 H -0.207 1.207
22 H -0.225 1.225
23 H -0.202 1.202
24 C -0.145 4.145
25 C -0.116 4.116
26 C -0.196 4.196
27 C -0.202 4.202
28 H 0.100 0.900
29 H 0.092 0.908
30 H 0.094 0.906
31 H 0.246 0.754
32 H 0.099 0.901
33 H 0.102 0.898
34 H 0.134 0.866
35 H 0.117 0.883
36 H 0.244 0.756
37 H 0.054 0.946
38 H 0.054 0.946
39 H 0.206 0.794
40 H 0.059 0.941
41 H 0.095 0.905
42 H 0.078 0.922
43 H 0.089 0.911
44 H 0.074 0.926
45 H 0.081 0.919
46 H 0.080 0.920
47 H 0.054 0.946
48 H 0.083 0.917
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 19.932 1.583 8.785 21.839
hybrid contribution -1.996 0.759 -0.851 2.299
sum 17.936 2.343 7.934 19.752
Atomic orbital electron populations
1.20412 0.86950 1.03477 1.03367 1.20443 0.98772 0.86572 1.02637
1.66223 1.06316 1.32080 1.16905 1.28875 0.94971 1.01331 1.02746
1.83820 1.05146 1.02922 1.67223 1.25737 0.96379 1.00196 1.12695
1.19610 1.01920 0.88270 0.95832 1.21645 1.04075 0.92129 0.98933
1.20983 0.76911 0.88732 0.83233 1.90659 1.53990 1.69057 1.32317
1.46021 1.68354 1.12698 1.09124 1.21127 0.96106 0.80974 0.97840
0.92003 1.21117 0.89165 0.93344 0.94289 1.42509 1.33998 1.37280
1.24703 1.19573 1.07488 1.11727 0.98921 0.90499 1.25501 1.00960
0.98466 1.01360 1.69810 1.33259 1.21363 1.37203 0.85269 0.78365
0.76749 0.79689 1.20709 1.22455 1.20195 1.21866 0.96206 0.94192
1.02244 1.21133 0.97944 0.94271 0.98220 1.21772 0.96676 0.99056
1.02102 1.21832 0.99545 1.01517 0.97289 0.90027 0.90766 0.90629
0.75358 0.90063 0.89796 0.86608 0.88296 0.75609 0.94623 0.94614
0.79351 0.94122 0.90469 0.92166 0.91130 0.92633 0.91907 0.91964
0.94556 0.91671 0.93074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.89 9.82 71.24 0.70 -1.19 16
2 C 0.05 1.13 6.74 41.52 0.28 1.41 16
3 N -0.50 -11.86 10.53 -191.55 -2.02 -13.87 16
4 C 0.02 0.30 12.23 130.65 1.60 1.90 16
5 S 0.15 2.47 23.22 -56.49 -1.31 1.16 16
6 C -0.23 -4.91 5.84 24.64 0.14 -4.77 16
7 C -0.02 -0.36 4.44 29.85 0.13 -0.23 16
8 C -0.13 -2.91 5.68 29.85 0.17 -2.74 16
9 C 0.51 15.53 7.72 87.66 0.68 16.20 16
10 O -0.58 -21.25 15.66 -3.01 -0.05 -21.29 16
11 N -0.71 -21.65 4.54 -442.54 -2.01 -23.66 16
12 C 0.14 4.68 2.08 44.99 0.09 4.78 16
13 H 0.06 2.38 5.89 -2.38 -0.01 2.37 16
14 C 0.15 5.51 5.46 86.38 0.47 5.98 16
15 N -0.74 -36.04 5.43 -343.45 -1.87 -37.91 16
16 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16
17 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16
18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16
19 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16
20 Si 0.97 45.22 29.55 68.60 2.03 47.25 16
21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16
23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
24 C -0.11 -2.73 4.40 30.59 0.13 -2.59 16
25 C -0.10 -2.29 2.80 -10.80 -0.03 -2.32 16
26 C -0.14 -2.57 9.19 71.98 0.66 -1.90 16
27 C -0.14 -3.69 8.82 71.98 0.63 -3.05 16
28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16
29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.07 1.75 7.18 -2.39 -0.02 1.74 16
31 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16
32 H 0.08 2.05 7.39 -2.39 -0.02 2.03 16
33 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16
34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16
35 H 0.10 2.31 7.98 -2.38 -0.02 2.29 16
36 H 0.41 11.79 8.58 -92.70 -0.80 10.99 16
37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
38 H 0.04 1.35 6.72 -2.39 -0.02 1.34 16
39 H 0.37 19.75 7.33 -92.71 -0.68 19.07 16
40 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16
41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
42 H 0.06 1.62 8.10 -2.39 -0.02 1.61 16
43 H 0.07 1.77 6.48 -2.38 -0.02 1.76 16
44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
47 H 0.04 1.09 6.72 -2.39 -0.02 1.07 16
48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
Total: -1.00 -68.88 410.12 1.51 -67.37
By element:
Atomic # 1 Polarization: 43.55 SS G_CDS: -0.52 Total: 43.03 kcal
Atomic # 6 Polarization: -11.36 SS G_CDS: 6.97 Total: -4.38 kcal
Atomic # 7 Polarization: -127.52 SS G_CDS: -5.61 Total: -133.13 kcal
Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal
Atomic # 16 Polarization: 2.47 SS G_CDS: -1.31 Total: 1.16 kcal
Total: -68.88 1.51 -67.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715390500.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.926 kcal
(2) G-P(sol) polarization free energy of solvation -68.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds