Wall clock time and date at job start Tue Mar 31 2020 22:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31789 * 122.74708 * 2 1 4 4 C 1.29025 * 117.12182 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.16864 * 359.72328 * 4 3 2 6 6 C 1.33639 * 122.75481 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.03207 * 359.97438 * 6 2 1 8 8 C 1.53002 * 109.47028 * 90.00222 * 7 6 2 9 9 C 1.50702 * 109.47016 * 179.97438 * 8 7 6 10 10 O 1.21274 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99825 * 180.27446 * 9 8 7 12 12 C 1.46499 * 120.00028 * 174.64599 * 11 9 8 13 13 H 1.09007 * 109.46928 * 37.90377 * 12 11 9 14 14 C 1.52993 * 109.47220 * 157.90490 * 12 11 9 15 15 N 1.46501 * 109.47145 * 304.99852 * 14 12 11 16 16 C 1.36944 * 119.99637 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99355 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00377 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99693 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47346 * 60.00002 * 20 18 16 22 22 H 1.48498 * 109.47031 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47070 * 300.00163 * 20 18 16 24 24 C 1.53003 * 109.46918 * 277.90571 * 12 11 9 25 25 C 1.52998 * 109.47024 * 174.13419 * 24 12 11 26 26 C 1.53000 * 109.47004 * 174.81881 * 25 24 12 27 27 C 1.52994 * 109.47446 * 294.82428 * 25 24 12 28 28 H 1.09004 * 109.46969 * 269.99920 * 1 2 3 29 29 H 1.09001 * 109.47438 * 29.99484 * 1 2 3 30 30 H 1.08999 * 109.47183 * 150.00012 * 1 2 3 31 31 H 1.08003 * 124.91569 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47237 * 329.99924 * 7 6 2 33 33 H 1.08999 * 109.46827 * 209.99708 * 7 6 2 34 34 H 1.09003 * 109.47355 * 59.99774 * 8 7 6 35 35 H 1.09005 * 109.47192 * 299.99790 * 8 7 6 36 36 H 0.97005 * 119.99750 * 354.64380 * 11 9 8 37 37 H 1.09002 * 109.47457 * 64.99776 * 14 12 11 38 38 H 1.09002 * 109.47416 * 184.99797 * 14 12 11 39 39 H 0.97000 * 120.00112 * 0.02562 * 15 14 12 40 40 H 0.97007 * 119.99807 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.47014 * 294.13815 * 24 12 11 42 42 H 1.08998 * 109.46968 * 54.14229 * 24 12 11 43 43 H 1.09006 * 109.47023 * 54.82295 * 25 24 12 44 44 H 1.08994 * 109.46725 * 60.00703 * 26 25 24 45 45 H 1.09000 * 109.46737 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.47412 * 300.00459 * 26 25 24 47 47 H 1.08998 * 109.47500 * 65.52401 * 27 25 24 48 48 H 1.08998 * 109.47179 * 185.52496 * 27 25 24 49 49 H 1.08999 * 109.47138 * 305.52314 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 -0.0005 5 16 3.9333 -0.6730 0.0067 6 6 2.2300 -1.1239 -0.0005 7 6 1.6847 -2.5288 -0.0006 8 6 1.4997 -3.0040 -1.4431 9 6 0.9550 -4.4091 -1.4432 10 8 0.7359 -4.9745 -0.3930 11 7 0.7161 -5.0391 -2.6105 12 6 0.2987 -6.4434 -2.6129 13 1 -0.3769 -6.6230 -1.7765 14 6 -0.4199 -6.7596 -3.9260 15 7 -1.5284 -5.8205 -4.1145 16 6 -2.3197 -5.9100 -5.2286 17 1 -2.1268 -6.6732 -5.9679 18 6 -3.3697 -5.0198 -5.4074 19 7 -3.6043 -4.0894 -4.5065 20 14 -4.4496 -5.1424 -6.9267 21 1 -5.1001 -6.4768 -6.9654 22 1 -5.4909 -4.0847 -6.8805 23 1 -3.6158 -4.9628 -8.1424 24 6 1.5298 -7.3416 -2.4761 25 6 1.0848 -8.7982 -2.3316 26 6 2.3143 -9.7088 -2.3246 27 6 0.3162 -8.9690 -1.0198 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8027 -0.0002 32 1 0.7238 -2.5456 0.5136 33 1 2.3832 -3.1896 0.5128 34 1 2.4607 -2.9871 -1.9573 35 1 0.8013 -2.3431 -1.9566 36 1 0.8205 -4.5627 -3.4490 37 1 0.2809 -6.6657 -4.7555 38 1 -0.8080 -7.7776 -3.8918 39 1 -1.7013 -5.1348 -3.4506 40 1 -4.3379 -3.4671 -4.6318 41 1 2.1548 -7.2388 -3.3631 42 1 2.0987 -7.0464 -1.5944 43 1 0.4394 -9.0657 -3.1683 44 1 2.9596 -9.4414 -1.4879 45 1 1.9972 -10.7466 -2.2221 46 1 2.8619 -9.5871 -3.2591 47 1 -0.6101 -8.3961 -1.0641 48 1 0.0843 -10.0234 -0.8691 49 1 0.9266 -8.6093 -0.1915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:57 Heat of formation + Delta-G solvation = -32.440916 kcal Electronic energy + Delta-G solvation = -27293.480365 eV Core-core repulsion = 23573.749801 eV Total energy + Delta-G solvation = -3719.730564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.13236 -40.70578 -38.56271 -36.34564 -35.36252 -35.05533 -32.99016 -31.98485 -30.54879 -28.54960 -28.00106 -27.20763 -25.98021 -24.78613 -24.27080 -22.55720 -21.28757 -20.57503 -19.81592 -19.18220 -19.06845 -18.05455 -17.24684 -16.92062 -16.59202 -16.22281 -16.01843 -15.81589 -15.31462 -15.08616 -15.00063 -14.69990 -14.47619 -14.28273 -14.12803 -13.95168 -13.51801 -13.44027 -13.40368 -13.27497 -13.15408 -13.04902 -12.93458 -12.72573 -12.62431 -12.48776 -12.24880 -12.02086 -11.88823 -11.82034 -11.75321 -11.53887 -11.34517 -10.99046 -10.80628 -10.59756 -10.18488 -9.91278 -9.64521 -8.99263 -7.93284 -5.22466 -0.25220 0.43388 0.79566 1.48836 1.50870 1.57016 1.70495 1.78577 2.29689 2.56940 3.34067 3.40895 3.62631 3.77434 3.90616 3.92948 4.01626 4.07862 4.16806 4.21974 4.25257 4.30397 4.37373 4.46796 4.56357 4.61324 4.70509 4.77041 4.80550 4.83139 4.91043 4.92062 4.96495 5.01230 5.01869 5.04779 5.06173 5.14217 5.19596 5.34852 5.36738 5.49492 5.50633 5.54165 5.65745 6.27340 6.63328 6.76919 7.31264 7.35055 8.08582 8.32682 9.29334 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007792 B = 0.003219 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.566956 B = 8695.348684 C =11618.403568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.047 3.953 3 N -0.501 5.501 4 C 0.018 3.982 5 S 0.155 5.845 6 C -0.229 4.229 7 C -0.016 4.016 8 C -0.127 4.127 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.712 5.712 12 C 0.145 3.855 13 H 0.062 0.938 14 C 0.148 3.852 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.276 1.276 24 C -0.106 4.106 25 C -0.097 4.097 26 C -0.139 4.139 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.408 0.592 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.360 2.029 8.207 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 N -0.215 5.215 4 C -0.279 4.279 5 S 0.409 5.591 6 C -0.350 4.350 7 C -0.056 4.056 8 C -0.168 4.168 9 C 0.301 3.699 10 O -0.460 6.460 11 N -0.362 5.362 12 C 0.040 3.960 13 H 0.080 0.920 14 C 0.021 3.979 15 N -0.385 5.385 16 C -0.377 4.377 17 H 0.095 0.905 18 C -0.263 4.263 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.202 1.202 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.196 4.196 27 C -0.202 4.202 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.246 0.754 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.244 0.756 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.932 1.583 8.785 21.839 hybrid contribution -1.996 0.759 -0.851 2.299 sum 17.936 2.343 7.934 19.752 Atomic orbital electron populations 1.20412 0.86950 1.03477 1.03367 1.20443 0.98772 0.86572 1.02637 1.66223 1.06316 1.32080 1.16905 1.28875 0.94971 1.01331 1.02746 1.83820 1.05146 1.02922 1.67223 1.25737 0.96379 1.00196 1.12695 1.19610 1.01920 0.88270 0.95832 1.21645 1.04075 0.92129 0.98933 1.20983 0.76911 0.88732 0.83233 1.90659 1.53990 1.69057 1.32317 1.46021 1.68354 1.12698 1.09124 1.21127 0.96106 0.80974 0.97840 0.92003 1.21117 0.89165 0.93344 0.94289 1.42509 1.33998 1.37280 1.24703 1.19573 1.07488 1.11727 0.98921 0.90499 1.25501 1.00960 0.98466 1.01360 1.69810 1.33259 1.21363 1.37203 0.85269 0.78365 0.76749 0.79689 1.20709 1.22455 1.20195 1.21866 0.96206 0.94192 1.02244 1.21133 0.97944 0.94271 0.98220 1.21772 0.96676 0.99056 1.02102 1.21832 0.99545 1.01517 0.97289 0.90027 0.90766 0.90629 0.75358 0.90063 0.89796 0.86608 0.88296 0.75609 0.94623 0.94614 0.79351 0.94122 0.90469 0.92166 0.91130 0.92633 0.91907 0.91964 0.94556 0.91671 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.82 71.24 0.70 -1.19 16 2 C 0.05 1.13 6.74 41.52 0.28 1.41 16 3 N -0.50 -11.86 10.53 -191.55 -2.02 -13.87 16 4 C 0.02 0.30 12.23 130.65 1.60 1.90 16 5 S 0.15 2.47 23.22 -56.49 -1.31 1.16 16 6 C -0.23 -4.91 5.84 24.64 0.14 -4.77 16 7 C -0.02 -0.36 4.44 29.85 0.13 -0.23 16 8 C -0.13 -2.91 5.68 29.85 0.17 -2.74 16 9 C 0.51 15.53 7.72 87.66 0.68 16.20 16 10 O -0.58 -21.25 15.66 -3.01 -0.05 -21.29 16 11 N -0.71 -21.65 4.54 -442.54 -2.01 -23.66 16 12 C 0.14 4.68 2.08 44.99 0.09 4.78 16 13 H 0.06 2.38 5.89 -2.38 -0.01 2.37 16 14 C 0.15 5.51 5.46 86.38 0.47 5.98 16 15 N -0.74 -36.04 5.43 -343.45 -1.87 -37.91 16 16 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 20 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.11 -2.73 4.40 30.59 0.13 -2.59 16 25 C -0.10 -2.29 2.80 -10.80 -0.03 -2.32 16 26 C -0.14 -2.57 9.19 71.98 0.66 -1.90 16 27 C -0.14 -3.69 8.82 71.98 0.63 -3.05 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.75 7.18 -2.39 -0.02 1.74 16 31 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.08 2.05 7.39 -2.39 -0.02 2.03 16 33 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 2.31 7.98 -2.38 -0.02 2.29 16 36 H 0.41 11.79 8.58 -92.70 -0.80 10.99 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.35 6.72 -2.39 -0.02 1.34 16 39 H 0.37 19.75 7.33 -92.71 -0.68 19.07 16 40 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.62 8.10 -2.39 -0.02 1.61 16 43 H 0.07 1.77 6.48 -2.38 -0.02 1.76 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.04 1.09 6.72 -2.39 -0.02 1.07 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.88 410.12 1.51 -67.37 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.52 Total: 43.03 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 6.97 Total: -4.38 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -5.61 Total: -133.13 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.31 Total: 1.16 kcal Total: -68.88 1.51 -67.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.926 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds