Wall clock time and date at job start Tue Mar 31 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31788 * 122.75020 * 2 1 4 4 C 1.29024 * 117.12561 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16809 * 359.72532 * 4 3 2 6 6 C 1.33641 * 122.75251 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.03397 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.47111 * 90.00040 * 7 6 2 9 9 C 1.50707 * 109.47027 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99772 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99981 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99927 * 174.77695 * 11 9 8 13 13 H 1.08998 * 109.47028 * 328.01694 * 12 11 9 14 14 C 1.53010 * 109.46783 * 208.02106 * 12 11 9 15 15 N 1.46497 * 109.47079 * 54.99679 * 14 12 11 16 16 C 1.36933 * 119.99780 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00265 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46968 * 90.00381 * 20 18 16 22 22 H 1.48495 * 109.46946 * 210.00292 * 20 18 16 23 23 H 1.48496 * 109.46846 * 330.00276 * 20 18 16 24 24 C 1.52995 * 109.47731 * 88.02215 * 12 11 9 25 25 C 1.53002 * 109.47381 * 184.07039 * 24 12 11 26 26 C 1.52995 * 109.47384 * 66.11111 * 25 24 12 27 27 C 1.52999 * 109.47314 * 186.11516 * 25 24 12 28 28 H 1.09000 * 109.47146 * 269.99784 * 1 2 3 29 29 H 1.08999 * 109.47185 * 29.99961 * 1 2 3 30 30 H 1.09000 * 109.47110 * 149.99960 * 1 2 3 31 31 H 1.08000 * 124.91278 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47412 * 329.99595 * 7 6 2 33 33 H 1.09003 * 109.46922 * 209.99375 * 7 6 2 34 34 H 1.09003 * 109.46684 * 299.99480 * 8 7 6 35 35 H 1.08995 * 109.47346 * 59.99514 * 8 7 6 36 36 H 0.97006 * 119.99672 * 354.76679 * 11 9 8 37 37 H 1.08999 * 109.46547 * 174.99673 * 14 12 11 38 38 H 1.08991 * 109.46786 * 294.99145 * 14 12 11 39 39 H 0.96996 * 120.00158 * 359.97438 * 15 14 12 40 40 H 0.97001 * 119.99792 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46799 * 304.06426 * 24 12 11 42 42 H 1.08996 * 109.47166 * 64.06282 * 24 12 11 43 43 H 1.08995 * 109.46631 * 306.10969 * 25 24 12 44 44 H 1.09003 * 109.47372 * 303.64045 * 26 25 24 45 45 H 1.09001 * 109.47227 * 63.63652 * 26 25 24 46 46 H 1.09000 * 109.47532 * 183.64289 * 26 25 24 47 47 H 1.08996 * 109.47032 * 59.99085 * 27 25 24 48 48 H 1.08993 * 109.47590 * 179.97438 * 27 25 24 49 49 H 1.09007 * 109.46593 * 299.99649 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 16 3.9333 -0.6731 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 6 1.5007 -3.0045 -1.4419 9 6 0.9560 -4.4097 -1.4418 10 8 0.7361 -4.9747 -0.3914 11 7 0.7132 -5.0384 -2.6089 12 6 0.2930 -6.4418 -2.6113 13 1 0.7467 -6.9584 -1.7655 14 6 0.7413 -7.1061 -3.9148 15 7 2.1859 -6.9284 -4.0817 16 6 2.8162 -7.4428 -5.1832 17 1 2.2483 -7.9791 -5.9291 18 6 4.1849 -7.2740 -5.3417 19 7 4.8768 -6.6200 -4.4329 20 14 5.0446 -7.9750 -6.8447 21 1 5.0451 -6.9632 -7.9315 22 1 6.4443 -8.3267 -6.4951 23 1 4.3278 -9.1925 -7.3020 24 6 -1.2308 -6.5183 -2.4979 25 6 -1.6620 -7.9829 -2.3983 26 6 -1.1521 -8.5764 -1.0835 27 6 -3.1891 -8.0689 -2.4384 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8027 0.0002 32 1 0.7234 -2.5454 0.5141 33 1 2.3828 -3.1895 0.5147 34 1 0.8026 -2.3439 -1.9561 35 1 2.4620 -2.9879 -1.9554 36 1 0.8165 -4.5615 -3.4473 37 1 0.5078 -8.1702 -3.8792 38 1 0.2193 -6.6474 -4.7545 39 1 2.6959 -6.4465 -3.4120 40 1 5.8332 -6.5018 -4.5439 41 1 -1.5561 -5.9824 -1.6061 42 1 -1.6840 -6.0652 -3.3796 43 1 -1.2446 -8.5422 -3.2355 44 1 -0.0702 -8.4569 -1.0263 45 1 -1.6196 -8.0589 -0.2458 46 1 -1.4032 -9.6363 -1.0417 47 1 -3.5523 -7.6460 -3.3750 48 1 -3.4963 -9.1122 -2.3679 49 1 -3.6065 -7.5095 -1.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:01 Heat of formation + Delta-G solvation = -12.502873 kcal Electronic energy + Delta-G solvation = -27290.584211 eV Core-core repulsion = 23571.718225 eV Total energy + Delta-G solvation = -3718.865985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12865 -39.58685 -37.33019 -34.86208 -34.36478 -33.50439 -31.38385 -30.86878 -29.21540 -27.61347 -27.02640 -25.56717 -25.12383 -23.64129 -22.64881 -21.32117 -20.07931 -19.40190 -18.95682 -18.24884 -17.28130 -16.79107 -15.93653 -15.79049 -15.41745 -14.97253 -14.93011 -14.46790 -14.05062 -13.76249 -13.67942 -13.58115 -13.24573 -13.13804 -12.81299 -12.76691 -12.71381 -12.49104 -12.20665 -12.16672 -12.11604 -11.90536 -11.70538 -11.54279 -11.12039 -10.89928 -10.89669 -10.77571 -10.77044 -10.45547 -10.24699 -10.01747 -9.78674 -9.77080 -9.61933 -9.29744 -8.93586 -8.81696 -8.63105 -6.98226 -5.81192 -3.10568 0.57253 1.25300 1.64886 2.63013 2.92257 3.39897 3.45648 3.47230 3.50042 4.08752 4.54288 4.65833 4.86719 4.93373 4.99090 5.00837 5.03378 5.09870 5.16462 5.29001 5.43588 5.44414 5.51532 5.54705 5.56618 5.62450 5.68469 5.73693 5.77622 5.83955 5.91649 5.92868 5.96757 6.01105 6.11729 6.17593 6.18068 6.21047 6.34791 6.44133 6.50989 6.59724 6.72184 6.95954 7.57348 7.65302 7.86467 8.36903 8.53646 9.48865 10.04894 10.40351 11.41193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003356 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.814352 B = 8340.915469 C =11476.656357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.469 5.469 4 C 0.010 3.990 5 S 0.130 5.870 6 C -0.212 4.212 7 C -0.024 4.024 8 C -0.138 4.138 9 C 0.517 3.483 10 O -0.549 6.549 11 N -0.711 5.711 12 C 0.135 3.865 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.731 5.731 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.197 0.803 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.035 0.965 38 H 0.022 0.978 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 10.679 8.825 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 N -0.183 5.183 4 C -0.288 4.288 5 S 0.384 5.616 6 C -0.333 4.333 7 C -0.065 4.065 8 C -0.179 4.179 9 C 0.303 3.697 10 O -0.427 6.427 11 N -0.361 5.361 12 C 0.031 3.969 13 H 0.108 0.892 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.158 4.158 25 C -0.116 4.116 26 C -0.205 4.205 27 C -0.201 4.201 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.214 0.786 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.238 0.762 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.693 10.216 9.429 16.948 hybrid contribution 0.166 0.177 -1.157 1.182 sum -9.527 10.393 8.272 16.347 Atomic orbital electron populations 1.20362 0.87150 1.03335 1.02921 1.20232 0.98221 0.86173 1.03087 1.66179 1.05094 1.31676 1.15359 1.28251 0.95258 1.00317 1.04971 1.84290 1.07026 1.03053 1.67197 1.25806 0.95085 1.00797 1.11618 1.19756 1.02353 0.88009 0.96339 1.21682 1.03730 0.94177 0.98279 1.20441 0.77305 0.88018 0.83928 1.90673 1.52842 1.67920 1.31289 1.45971 1.68493 1.13013 1.08653 1.21337 0.93758 0.81293 1.00533 0.89159 1.21022 0.87205 0.97438 0.92749 1.42338 1.01619 1.67315 1.26270 1.19211 0.90860 1.28447 0.98829 0.91198 1.24730 0.96430 1.01075 0.98481 1.69660 1.06976 1.46237 1.35053 0.86207 0.79041 0.78601 0.82432 1.21732 1.21767 1.20763 1.21953 0.95442 0.96465 1.01891 1.21138 0.95484 0.96054 0.98960 1.21870 1.01853 0.99932 0.96818 1.21823 0.95642 1.01284 1.01390 0.90726 0.90706 0.90557 0.78605 0.88945 0.89539 0.88954 0.88218 0.76222 0.94723 0.96002 0.78071 0.93497 0.91704 0.92008 0.90426 0.92022 0.92955 0.93158 0.92905 0.92924 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.82 36.01 0.35 -0.36 16 2 C 0.05 0.63 6.74 -84.22 -0.57 0.06 16 3 N -0.47 -5.71 10.53 -11.90 -0.13 -5.83 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.13 1.37 23.22 -107.50 -2.50 -1.13 16 6 C -0.21 -2.43 5.84 -35.92 -0.21 -2.64 16 7 C -0.02 -0.29 4.44 -27.88 -0.12 -0.41 16 8 C -0.14 -1.67 5.68 -27.88 -0.16 -1.82 16 9 C 0.52 7.85 7.81 -10.98 -0.09 7.76 16 10 O -0.55 -9.86 15.65 5.56 0.09 -9.77 16 11 N -0.71 -10.81 4.49 -53.81 -0.24 -11.05 16 12 C 0.14 2.19 2.08 -67.93 -0.14 2.05 16 13 H 0.09 1.67 5.78 -51.93 -0.30 1.37 16 14 C 0.14 2.72 5.45 -4.04 -0.02 2.69 16 15 N -0.73 -17.64 5.43 -59.91 -0.33 -17.97 16 16 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.12 -1.59 4.47 -26.73 -0.12 -1.71 16 25 C -0.10 -1.21 2.78 -90.62 -0.25 -1.47 16 26 C -0.15 -1.90 9.05 37.15 0.34 -1.56 16 27 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.63 7.19 -51.93 -0.37 0.25 16 31 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.09 1.04 7.39 -51.93 -0.38 0.66 16 33 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.09 0.92 7.98 -51.93 -0.41 0.51 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.40 5.79 8.64 -40.82 -0.35 5.43 16 37 H 0.04 0.67 6.66 -51.93 -0.35 0.32 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.03 6.37 -51.93 -0.33 0.70 16 44 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -32.07 409.87 -9.66 -41.73 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.17 Total: 12.58 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.26 Total: -4.95 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.03 Total: -61.58 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.07 -9.66 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.230 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds