Wall clock time and date at job start Tue Mar 31 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31788 * 122.75020 * 2 1 4 4 C 1.29024 * 117.12561 * 179.97438 * 3 2 1 5 5 S 1.70980 * 110.16809 * 359.72532 * 4 3 2 6 6 C 1.33641 * 122.75251 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.03397 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.47111 * 90.00040 * 7 6 2 9 9 C 1.50707 * 109.47027 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99772 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99981 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99927 * 174.77695 * 11 9 8 13 13 H 1.08998 * 109.47028 * 328.01694 * 12 11 9 14 14 C 1.53010 * 109.46783 * 208.02106 * 12 11 9 15 15 N 1.46497 * 109.47079 * 54.99679 * 14 12 11 16 16 C 1.36933 * 119.99780 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00265 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46968 * 90.00381 * 20 18 16 22 22 H 1.48495 * 109.46946 * 210.00292 * 20 18 16 23 23 H 1.48496 * 109.46846 * 330.00276 * 20 18 16 24 24 C 1.52995 * 109.47731 * 88.02215 * 12 11 9 25 25 C 1.53002 * 109.47381 * 184.07039 * 24 12 11 26 26 C 1.52995 * 109.47384 * 66.11111 * 25 24 12 27 27 C 1.52999 * 109.47314 * 186.11516 * 25 24 12 28 28 H 1.09000 * 109.47146 * 269.99784 * 1 2 3 29 29 H 1.08999 * 109.47185 * 29.99961 * 1 2 3 30 30 H 1.09000 * 109.47110 * 149.99960 * 1 2 3 31 31 H 1.08000 * 124.91278 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47412 * 329.99595 * 7 6 2 33 33 H 1.09003 * 109.46922 * 209.99375 * 7 6 2 34 34 H 1.09003 * 109.46684 * 299.99480 * 8 7 6 35 35 H 1.08995 * 109.47346 * 59.99514 * 8 7 6 36 36 H 0.97006 * 119.99672 * 354.76679 * 11 9 8 37 37 H 1.08999 * 109.46547 * 174.99673 * 14 12 11 38 38 H 1.08991 * 109.46786 * 294.99145 * 14 12 11 39 39 H 0.96996 * 120.00158 * 359.97438 * 15 14 12 40 40 H 0.97001 * 119.99792 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46799 * 304.06426 * 24 12 11 42 42 H 1.08996 * 109.47166 * 64.06282 * 24 12 11 43 43 H 1.08995 * 109.46631 * 306.10969 * 25 24 12 44 44 H 1.09003 * 109.47372 * 303.64045 * 26 25 24 45 45 H 1.09001 * 109.47227 * 63.63652 * 26 25 24 46 46 H 1.09000 * 109.47532 * 183.64289 * 26 25 24 47 47 H 1.08996 * 109.47032 * 59.99085 * 27 25 24 48 48 H 1.08993 * 109.47590 * 179.97438 * 27 25 24 49 49 H 1.09007 * 109.46593 * 299.99649 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 16 3.9333 -0.6731 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 6 1.5007 -3.0045 -1.4419 9 6 0.9560 -4.4097 -1.4418 10 8 0.7361 -4.9747 -0.3914 11 7 0.7132 -5.0384 -2.6089 12 6 0.2930 -6.4418 -2.6113 13 1 0.7467 -6.9584 -1.7655 14 6 0.7413 -7.1061 -3.9148 15 7 2.1859 -6.9284 -4.0817 16 6 2.8162 -7.4428 -5.1832 17 1 2.2483 -7.9791 -5.9291 18 6 4.1849 -7.2740 -5.3417 19 7 4.8768 -6.6200 -4.4329 20 14 5.0446 -7.9750 -6.8447 21 1 5.0451 -6.9632 -7.9315 22 1 6.4443 -8.3267 -6.4951 23 1 4.3278 -9.1925 -7.3020 24 6 -1.2308 -6.5183 -2.4979 25 6 -1.6620 -7.9829 -2.3983 26 6 -1.1521 -8.5764 -1.0835 27 6 -3.1891 -8.0689 -2.4384 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8027 0.0002 32 1 0.7234 -2.5454 0.5141 33 1 2.3828 -3.1895 0.5147 34 1 0.8026 -2.3439 -1.9561 35 1 2.4620 -2.9879 -1.9554 36 1 0.8165 -4.5615 -3.4473 37 1 0.5078 -8.1702 -3.8792 38 1 0.2193 -6.6474 -4.7545 39 1 2.6959 -6.4465 -3.4120 40 1 5.8332 -6.5018 -4.5439 41 1 -1.5561 -5.9824 -1.6061 42 1 -1.6840 -6.0652 -3.3796 43 1 -1.2446 -8.5422 -3.2355 44 1 -0.0702 -8.4569 -1.0263 45 1 -1.6196 -8.0589 -0.2458 46 1 -1.4032 -9.6363 -1.0417 47 1 -3.5523 -7.6460 -3.3750 48 1 -3.4963 -9.1122 -2.3679 49 1 -3.6065 -7.5095 -1.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:00 Heat of formation + Delta-G solvation = -32.274781 kcal Electronic energy + Delta-G solvation = -27291.441585 eV Core-core repulsion = 23571.718225 eV Total energy + Delta-G solvation = -3719.723360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12588 -40.69601 -38.57251 -36.33329 -35.36443 -35.05730 -32.98573 -31.97325 -30.54581 -28.53036 -27.99599 -27.19779 -25.97384 -24.78151 -24.27566 -22.57915 -21.31263 -20.56242 -19.79608 -19.18256 -19.09068 -18.06768 -17.24850 -16.81490 -16.73018 -16.17896 -15.91028 -15.84418 -15.40963 -15.05038 -15.01692 -14.63445 -14.49911 -14.25810 -14.20546 -13.89395 -13.48009 -13.43100 -13.34832 -13.31327 -13.13678 -13.02992 -12.92042 -12.76851 -12.62548 -12.47301 -12.21522 -12.02707 -11.86070 -11.80895 -11.76455 -11.52880 -11.32249 -10.99735 -10.80516 -10.61150 -10.20249 -9.91628 -9.65371 -8.98999 -7.93592 -5.22479 -0.25666 0.43409 0.82688 1.48726 1.49560 1.57872 1.69104 1.78959 2.30526 2.56683 3.34205 3.40852 3.63042 3.77497 3.91771 3.95800 3.99661 4.08956 4.18880 4.21719 4.25481 4.32097 4.35444 4.46053 4.59145 4.61179 4.76282 4.77746 4.80322 4.83299 4.93354 4.93726 4.96372 5.01612 5.03019 5.04744 5.07282 5.14590 5.19567 5.37304 5.38969 5.50428 5.51192 5.54982 5.65523 6.27415 6.63267 6.74419 7.31001 7.35027 8.08703 8.32777 9.29391 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003356 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.814352 B = 8340.915469 C =11476.656357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.050 3.950 3 N -0.496 5.496 4 C 0.022 3.978 5 S 0.123 5.877 6 C -0.228 4.228 7 C -0.015 4.015 8 C -0.128 4.128 9 C 0.514 3.486 10 O -0.579 6.579 11 N -0.710 5.710 12 C 0.145 3.855 13 H 0.063 0.937 14 C 0.147 3.853 15 N -0.741 5.741 16 C -0.244 4.244 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.271 1.271 24 C -0.106 4.106 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.409 0.591 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.794 11.238 7.927 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 N -0.210 5.210 4 C -0.276 4.276 5 S 0.378 5.622 6 C -0.349 4.349 7 C -0.056 4.056 8 C -0.168 4.168 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.360 5.360 12 C 0.040 3.960 13 H 0.081 0.919 14 C 0.020 3.980 15 N -0.384 5.384 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.196 1.196 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.244 0.756 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.171 10.764 8.508 17.693 hybrid contribution 0.591 0.007 -0.841 1.029 sum -10.580 10.771 7.667 16.933 Atomic orbital electron populations 1.20448 0.85779 1.03943 1.03655 1.20593 0.99305 0.86001 1.02234 1.66256 1.05945 1.32008 1.16808 1.28832 0.95219 1.00753 1.02747 1.84328 1.06814 1.03781 1.67298 1.25733 0.95525 1.00506 1.13157 1.19607 1.02142 0.88002 0.95804 1.21641 1.03725 0.92521 0.98924 1.20946 0.76588 0.88969 0.83278 1.90657 1.54153 1.68885 1.32279 1.45973 1.68398 1.12607 1.09062 1.21140 0.95545 0.81454 0.97876 0.91871 1.21141 0.84477 0.97883 0.94512 1.42502 1.03645 1.66992 1.25306 1.19608 0.91225 1.27374 0.99333 0.90514 1.25492 0.97311 1.02215 1.01278 1.69814 1.06765 1.48128 1.36992 0.85200 0.77388 0.78238 0.79283 1.21286 1.22592 1.19580 1.21853 0.92962 0.97348 1.02352 1.21144 0.97185 0.95069 0.98235 1.21846 1.00168 1.00926 0.97341 1.21772 0.93572 1.02164 1.02095 0.89900 0.90320 0.89683 0.75488 0.88512 0.91291 0.86355 0.88840 0.75607 0.94599 0.94645 0.79394 0.94125 0.92062 0.90475 0.91151 0.94547 0.92761 0.91883 0.91992 0.91968 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.82 71.24 0.70 -0.63 16 2 C 0.05 1.11 6.74 41.52 0.28 1.39 16 3 N -0.50 -11.41 10.53 -191.55 -2.02 -13.43 16 4 C 0.02 0.41 12.23 130.66 1.60 2.00 16 5 S 0.12 2.54 23.22 -56.49 -1.31 1.22 16 6 C -0.23 -5.12 5.84 24.64 0.14 -4.98 16 7 C -0.02 -0.36 4.44 29.85 0.13 -0.23 16 8 C -0.13 -3.04 5.68 29.85 0.17 -2.87 16 9 C 0.51 15.69 7.81 87.66 0.68 16.37 16 10 O -0.58 -21.21 15.65 -3.03 -0.05 -21.26 16 11 N -0.71 -21.47 4.49 -442.54 -1.99 -23.46 16 12 C 0.14 4.67 2.08 44.99 0.09 4.77 16 13 H 0.06 2.42 5.78 -2.39 -0.01 2.41 16 14 C 0.15 5.46 5.45 86.38 0.47 5.93 16 15 N -0.74 -35.96 5.43 -343.45 -1.87 -37.82 16 16 C -0.24 -13.10 9.99 84.03 0.84 -12.27 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.97 -57.84 13.06 21.65 0.28 -57.55 16 20 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 C -0.11 -2.71 4.47 30.59 0.14 -2.58 16 25 C -0.10 -2.30 2.78 -10.80 -0.03 -2.33 16 26 C -0.15 -3.68 9.05 71.98 0.65 -3.03 16 27 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.26 7.19 -2.39 -0.02 1.24 16 31 H 0.23 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.10 2.15 7.39 -2.39 -0.02 2.13 16 33 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.12 2.19 7.98 -2.39 -0.02 2.17 16 35 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 36 H 0.41 11.47 8.64 -92.70 -0.80 10.67 16 37 H 0.04 1.36 6.66 -2.39 -0.02 1.34 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.37 19.69 7.33 -92.71 -0.68 19.01 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.77 6.37 -2.39 -0.02 1.76 16 44 H 0.04 1.09 6.37 -2.39 -0.02 1.08 16 45 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -68.61 409.87 1.56 -67.06 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.52 Total: 41.91 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 7.00 Total: -3.82 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -5.59 Total: -132.27 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.31 Total: 1.22 kcal Total: -68.61 1.56 -67.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.783 kcal (2) G-P(sol) polarization free energy of solvation -68.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds