Wall clock time and date at job start Tue Mar 31 2020 22:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29426 * 124.80404 * 2 1 4 4 C 1.30950 * 117.36195 * 179.73007 * 3 2 1 5 5 C 1.50694 * 122.90021 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47349 * 90.02816 * 5 4 3 7 7 C 1.52999 * 109.47153 * 174.99847 * 6 5 4 8 8 C 1.53003 * 109.46835 * 294.99875 * 6 5 4 9 9 C 1.35653 * 114.19147 * 0.02562 * 4 3 2 10 10 C 1.46684 * 126.12929 * 180.02562 * 9 4 3 11 11 O 1.21684 * 120.00113 * 359.97438 * 10 9 4 12 12 N 1.34785 * 120.00054 * 179.97438 * 10 9 4 13 13 C 1.46501 * 119.99980 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47090 * 35.00009 * 13 12 10 15 15 C 1.52998 * 109.47082 * 275.00027 * 13 12 10 16 16 C 1.52997 * 109.47179 * 154.99947 * 13 12 10 17 17 N 1.46510 * 109.47015 * 305.00083 * 16 13 12 18 18 C 1.46495 * 120.00017 * 269.99931 * 17 16 13 19 19 C 1.36944 * 119.99723 * 89.99868 * 17 16 13 20 20 H 1.07999 * 119.99780 * 22.29403 * 19 17 16 21 21 C 1.38807 * 119.99454 * 202.28992 * 19 17 16 22 22 N 1.31615 * 120.00600 * 11.47312 * 21 19 17 23 23 Si 1.86808 * 119.99661 * 191.47194 * 21 19 17 24 24 H 1.48494 * 109.46930 * 59.99835 * 23 21 19 25 25 H 1.48500 * 109.47130 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46870 * 300.00057 * 23 21 19 27 27 S 1.70956 * 124.80455 * 179.69095 * 2 1 3 28 28 H 1.08999 * 109.46779 * 90.00097 * 1 2 3 29 29 H 1.09001 * 109.47435 * 209.99517 * 1 2 3 30 30 H 1.08998 * 109.47269 * 330.00587 * 1 2 3 31 31 H 1.09003 * 109.47338 * 210.02629 * 5 4 3 32 32 H 1.09001 * 109.47720 * 330.02245 * 5 4 3 33 33 H 1.08995 * 109.47015 * 54.99721 * 6 5 4 34 34 H 1.08995 * 109.47263 * 60.00026 * 7 6 5 35 35 H 1.09004 * 109.46598 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47070 * 299.99522 * 7 6 5 37 37 H 1.09000 * 109.46988 * 59.99746 * 8 6 5 38 38 H 1.08999 * 109.46911 * 180.02562 * 8 6 5 39 39 H 1.09005 * 109.46683 * 299.99599 * 8 6 5 40 40 H 0.96993 * 119.99922 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47143 * 299.99950 * 15 13 12 42 42 H 1.08999 * 109.47119 * 60.00509 * 15 13 12 43 43 H 1.08999 * 109.46977 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47182 * 64.99378 * 16 13 12 45 45 H 1.08997 * 109.47571 * 185.00537 * 16 13 12 46 46 H 1.08995 * 109.47292 * 94.22268 * 18 17 16 47 47 H 1.08995 * 109.46928 * 214.22156 * 18 17 16 48 48 H 1.09004 * 109.46998 * 334.22401 * 18 17 16 49 49 H 0.96999 * 120.00619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8931 0.0055 5 6 4.5197 2.0417 0.0067 6 6 4.8448 2.4333 1.4497 7 6 5.9277 3.5141 1.4532 8 6 3.5839 2.9724 2.1281 9 6 3.9351 -0.4059 0.0099 10 6 5.3188 -0.8926 0.0170 11 8 6.2425 -0.1004 0.0189 12 7 5.5672 -2.2173 0.0214 13 6 6.9492 -2.7034 0.0279 14 1 7.5691 -2.0283 0.6179 15 6 7.4775 -2.7578 -1.4070 16 6 6.9943 -4.1043 0.6413 17 7 6.3789 -4.0753 1.9706 18 6 7.1999 -3.7983 3.1519 19 6 5.0364 -4.3071 2.1088 20 1 4.5006 -4.8500 1.3442 21 6 4.3642 -3.8445 3.2317 22 7 4.9531 -2.9970 4.0486 23 14 2.6237 -4.4246 3.5835 24 1 2.6171 -5.9008 3.7442 25 1 2.1330 -3.7890 4.8326 26 1 1.7378 -4.0457 2.4535 27 16 2.4828 -1.4037 0.0076 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5137 31 1 5.4351 1.7415 -0.5033 32 1 4.0785 2.8938 -0.5104 33 1 5.2031 1.5581 1.9916 34 1 5.5694 4.3892 0.9112 35 1 6.1589 3.7933 2.4812 36 1 6.8260 3.1299 0.9699 37 1 2.8124 2.2024 2.1256 38 1 3.8155 3.2518 3.1559 39 1 3.2256 3.8476 1.5861 40 1 4.8310 -2.8488 0.0203 41 1 6.8576 -3.4329 -1.9970 42 1 7.4455 -1.7598 -1.8440 43 1 8.5058 -3.1191 -1.4021 44 1 6.4474 -4.7983 0.0030 45 1 8.0308 -4.4300 0.7279 46 1 7.1582 -2.7337 3.3818 47 1 6.8203 -4.3682 3.9999 48 1 8.2320 -4.0868 2.9529 49 1 4.4835 -2.6740 4.8335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716032569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:59 Heat of formation + Delta-G solvation = 10.096189 kcal Electronic energy + Delta-G solvation = -29184.570146 eV Core-core repulsion = 25466.684130 eV Total energy + Delta-G solvation = -3717.886016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16525 -38.75206 -36.34764 -35.75354 -33.98365 -32.26833 -31.37955 -30.20150 -28.61504 -27.22346 -26.81612 -26.18310 -25.62928 -22.98642 -22.38098 -21.24109 -19.91972 -19.83872 -18.98995 -17.69667 -16.83230 -16.25424 -15.54504 -15.19988 -14.91010 -14.67614 -14.38944 -14.15156 -13.75884 -13.69544 -13.64158 -13.20326 -13.09378 -12.87988 -12.60371 -12.43453 -12.32506 -12.21310 -12.01594 -11.91520 -11.50923 -11.42715 -11.33028 -11.20092 -10.87400 -10.75265 -10.64225 -10.59797 -10.43017 -10.28581 -10.26757 -10.10089 -9.86272 -9.61458 -9.21500 -9.14900 -8.59947 -8.48238 -8.25204 -6.81039 -5.77006 -3.23238 0.56924 1.47781 1.90329 2.75723 3.29270 3.36958 3.38432 3.65489 3.87532 4.18153 4.42795 4.97015 5.18546 5.23266 5.26776 5.30783 5.35420 5.37374 5.47027 5.51432 5.55273 5.65442 5.78519 5.85801 5.88032 5.96203 5.99880 6.01921 6.07150 6.13882 6.16476 6.20628 6.22128 6.35750 6.42077 6.49331 6.60681 6.62658 6.73055 6.73158 6.86032 7.21319 7.36424 7.67015 7.77511 7.87607 8.20120 8.33276 8.82121 9.17294 9.81211 10.31254 11.26866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.005561 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.136776 B = 5033.575226 C = 6110.151297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.038 3.962 3 N -0.474 5.474 4 C 0.139 3.861 5 C -0.045 4.045 6 C -0.084 4.084 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.275 4.275 10 C 0.598 3.402 11 O -0.541 6.541 12 N -0.681 5.681 13 C 0.119 3.881 14 H 0.080 0.920 15 C -0.160 4.160 16 C 0.141 3.859 17 N -0.598 5.598 18 C 0.165 3.835 19 C -0.260 4.260 20 H 0.064 0.936 21 C 0.012 3.988 22 N -0.896 5.896 23 Si 0.887 3.113 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 S 0.177 5.823 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.401 0.599 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.044 0.956 48 H -0.004 1.004 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 5.648 -9.412 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.238 4.238 3 N -0.189 5.189 4 C 0.001 3.999 5 C -0.085 4.085 6 C -0.103 4.103 7 C -0.197 4.197 8 C -0.199 4.199 9 C -0.399 4.399 10 C 0.382 3.618 11 O -0.421 6.421 12 N -0.329 5.329 13 C 0.011 3.989 14 H 0.098 0.902 15 C -0.219 4.219 16 C 0.013 3.987 17 N -0.320 5.320 18 C 0.020 3.980 19 C -0.389 4.389 20 H 0.082 0.918 21 C -0.187 4.187 22 N -0.540 5.540 23 Si 0.717 3.283 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.203 1.203 27 S 0.435 5.565 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.237 0.763 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.014 0.986 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.826 5.603 -9.204 11.435 hybrid contribution -0.931 0.078 0.508 1.064 sum -4.757 5.682 -8.696 11.425 Atomic orbital electron populations 1.20443 0.85241 1.04292 1.03715 1.27268 1.01895 0.91855 1.02732 1.66048 1.04443 1.31226 1.17203 1.20490 0.89682 0.93354 0.96364 1.20487 0.96782 0.93026 0.98168 1.20953 0.95510 0.98950 0.94921 1.21757 0.98623 0.97942 1.01386 1.21828 0.97667 1.00862 0.99548 1.25596 0.98451 0.96916 1.18950 1.16575 0.85513 0.83076 0.76595 1.90701 1.44185 1.55148 1.52105 1.45639 1.09534 1.05509 1.72258 1.21884 0.82183 0.99705 0.95102 0.90231 1.22163 1.00660 1.01567 0.97498 1.21200 0.97143 0.92452 0.87915 1.43881 1.05599 1.82688 0.99850 1.20789 0.88757 0.99523 0.88924 1.18991 0.84467 1.29332 1.06153 0.91777 1.24952 0.97382 0.97337 0.99073 1.70046 1.36840 1.31869 1.15197 0.86600 0.85300 0.78543 0.77882 1.20994 1.21601 1.20338 1.84180 0.96581 1.10655 1.65098 0.89595 0.90044 0.89293 0.87834 0.91055 0.90624 0.93164 0.92901 0.92293 0.92655 0.93349 0.93036 0.76308 0.93033 0.92850 0.92099 0.93381 0.92790 0.95399 0.93705 0.98581 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.46 36.01 0.38 -0.42 16 2 C 0.04 0.56 7.39 -13.29 -0.10 0.46 16 3 N -0.47 -7.88 9.64 -7.71 -0.07 -7.95 16 4 C 0.14 2.47 5.32 -83.90 -0.45 2.03 16 5 C -0.04 -0.74 4.50 -27.88 -0.13 -0.86 16 6 C -0.08 -1.36 2.91 -90.62 -0.26 -1.63 16 7 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 8 C -0.14 -2.14 8.97 37.16 0.33 -1.81 16 9 C -0.27 -5.20 6.48 -37.10 -0.24 -5.44 16 10 C 0.60 12.24 7.74 -12.85 -0.10 12.14 16 11 O -0.54 -11.78 13.93 5.20 0.07 -11.71 16 12 N -0.68 -13.40 4.48 -55.11 -0.25 -13.65 16 13 C 0.12 2.21 2.88 -67.93 -0.20 2.01 16 14 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 15 C -0.16 -2.39 9.48 37.16 0.35 -2.03 16 16 C 0.14 2.68 5.36 -4.04 -0.02 2.66 16 17 N -0.60 -14.04 2.82 -181.12 -0.51 -14.55 16 18 C 0.16 3.97 9.01 59.84 0.54 4.51 16 19 C -0.26 -6.50 8.02 -15.06 -0.12 -6.62 16 20 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 21 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 22 N -0.90 -25.13 10.59 55.49 0.59 -24.55 16 23 Si 0.89 20.63 29.57 -169.99 -5.03 15.61 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 S 0.18 2.93 22.31 -107.50 -2.40 0.53 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.81 6.01 -51.93 -0.31 1.50 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 7.91 6.58 -40.82 -0.27 7.64 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 45 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 46 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 47 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 48 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -29.65 404.77 -9.61 -39.26 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.36 Total: 7.25 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 0.24 Total: 3.66 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.24 Total: -60.70 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.40 Total: 0.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.65 -9.61 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.355 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds