Wall clock time and date at job start Tue Mar 31 2020 22:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29426 * 124.80404 * 2 1 4 4 C 1.30950 * 117.36195 * 179.73007 * 3 2 1 5 5 C 1.50694 * 122.90021 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47349 * 90.02816 * 5 4 3 7 7 C 1.52999 * 109.47153 * 174.99847 * 6 5 4 8 8 C 1.53003 * 109.46835 * 294.99875 * 6 5 4 9 9 C 1.35653 * 114.19147 * 0.02562 * 4 3 2 10 10 C 1.46684 * 126.12929 * 180.02562 * 9 4 3 11 11 O 1.21684 * 120.00113 * 359.97438 * 10 9 4 12 12 N 1.34785 * 120.00054 * 179.97438 * 10 9 4 13 13 C 1.46501 * 119.99980 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47090 * 35.00009 * 13 12 10 15 15 C 1.52998 * 109.47082 * 275.00027 * 13 12 10 16 16 C 1.52997 * 109.47179 * 154.99947 * 13 12 10 17 17 N 1.46510 * 109.47015 * 305.00083 * 16 13 12 18 18 C 1.46495 * 120.00017 * 269.99931 * 17 16 13 19 19 C 1.36944 * 119.99723 * 89.99868 * 17 16 13 20 20 H 1.07999 * 119.99780 * 22.29403 * 19 17 16 21 21 C 1.38807 * 119.99454 * 202.28992 * 19 17 16 22 22 N 1.31615 * 120.00600 * 11.47312 * 21 19 17 23 23 Si 1.86808 * 119.99661 * 191.47194 * 21 19 17 24 24 H 1.48494 * 109.46930 * 59.99835 * 23 21 19 25 25 H 1.48500 * 109.47130 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46870 * 300.00057 * 23 21 19 27 27 S 1.70956 * 124.80455 * 179.69095 * 2 1 3 28 28 H 1.08999 * 109.46779 * 90.00097 * 1 2 3 29 29 H 1.09001 * 109.47435 * 209.99517 * 1 2 3 30 30 H 1.08998 * 109.47269 * 330.00587 * 1 2 3 31 31 H 1.09003 * 109.47338 * 210.02629 * 5 4 3 32 32 H 1.09001 * 109.47720 * 330.02245 * 5 4 3 33 33 H 1.08995 * 109.47015 * 54.99721 * 6 5 4 34 34 H 1.08995 * 109.47263 * 60.00026 * 7 6 5 35 35 H 1.09004 * 109.46598 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47070 * 299.99522 * 7 6 5 37 37 H 1.09000 * 109.46988 * 59.99746 * 8 6 5 38 38 H 1.08999 * 109.46911 * 180.02562 * 8 6 5 39 39 H 1.09005 * 109.46683 * 299.99599 * 8 6 5 40 40 H 0.96993 * 119.99922 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47143 * 299.99950 * 15 13 12 42 42 H 1.08999 * 109.47119 * 60.00509 * 15 13 12 43 43 H 1.08999 * 109.46977 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47182 * 64.99378 * 16 13 12 45 45 H 1.08997 * 109.47571 * 185.00537 * 16 13 12 46 46 H 1.08995 * 109.47292 * 94.22268 * 18 17 16 47 47 H 1.08995 * 109.46928 * 214.22156 * 18 17 16 48 48 H 1.09004 * 109.46998 * 334.22401 * 18 17 16 49 49 H 0.96999 * 120.00619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8931 0.0055 5 6 4.5197 2.0417 0.0067 6 6 4.8448 2.4333 1.4497 7 6 5.9277 3.5141 1.4532 8 6 3.5839 2.9724 2.1281 9 6 3.9351 -0.4059 0.0099 10 6 5.3188 -0.8926 0.0170 11 8 6.2425 -0.1004 0.0189 12 7 5.5672 -2.2173 0.0214 13 6 6.9492 -2.7034 0.0279 14 1 7.5691 -2.0283 0.6179 15 6 7.4775 -2.7578 -1.4070 16 6 6.9943 -4.1043 0.6413 17 7 6.3789 -4.0753 1.9706 18 6 7.1999 -3.7983 3.1519 19 6 5.0364 -4.3071 2.1088 20 1 4.5006 -4.8500 1.3442 21 6 4.3642 -3.8445 3.2317 22 7 4.9531 -2.9970 4.0486 23 14 2.6237 -4.4246 3.5835 24 1 2.6171 -5.9008 3.7442 25 1 2.1330 -3.7890 4.8326 26 1 1.7378 -4.0457 2.4535 27 16 2.4828 -1.4037 0.0076 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5137 31 1 5.4351 1.7415 -0.5033 32 1 4.0785 2.8938 -0.5104 33 1 5.2031 1.5581 1.9916 34 1 5.5694 4.3892 0.9112 35 1 6.1589 3.7933 2.4812 36 1 6.8260 3.1299 0.9699 37 1 2.8124 2.2024 2.1256 38 1 3.8155 3.2518 3.1559 39 1 3.2256 3.8476 1.5861 40 1 4.8310 -2.8488 0.0203 41 1 6.8576 -3.4329 -1.9970 42 1 7.4455 -1.7598 -1.8440 43 1 8.5058 -3.1191 -1.4021 44 1 6.4474 -4.7983 0.0030 45 1 8.0308 -4.4300 0.7279 46 1 7.1582 -2.7337 3.3818 47 1 6.8203 -4.3682 3.9999 48 1 8.2320 -4.0868 2.9529 49 1 4.4835 -2.6740 4.8335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716032569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:58 Heat of formation + Delta-G solvation = -6.835010 kcal Electronic energy + Delta-G solvation = -29185.304338 eV Core-core repulsion = 25466.684130 eV Total energy + Delta-G solvation = -3718.620208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52989 -40.24502 -38.01821 -37.05960 -35.70714 -33.55255 -33.07390 -31.77295 -29.76748 -28.53091 -28.04619 -28.00938 -27.37453 -24.24863 -23.86358 -22.94402 -21.41859 -21.19155 -20.42528 -19.02882 -18.68517 -17.75132 -17.04990 -16.80311 -16.49521 -16.00573 -15.75789 -15.58895 -15.43054 -15.13506 -14.84569 -14.81477 -14.52712 -14.36946 -13.94025 -13.80028 -13.48410 -13.28706 -13.27249 -13.12185 -13.08826 -12.89097 -12.71513 -12.69289 -12.57538 -12.49752 -12.15630 -12.00833 -11.97827 -11.89164 -11.85412 -11.69315 -11.59773 -10.99762 -10.66791 -10.58219 -10.49815 -9.93274 -9.64721 -8.76276 -7.77313 -5.24455 -0.74538 0.19212 0.59508 1.41608 1.44716 1.48433 1.52679 2.13965 2.39871 2.52708 3.00289 3.38707 3.69909 3.80277 3.87498 3.95906 3.99716 4.11439 4.19430 4.28535 4.43089 4.52719 4.52985 4.63590 4.69323 4.72258 4.74932 4.79560 4.80892 4.83465 4.88807 4.94694 4.97125 4.99170 5.05938 5.15744 5.17503 5.32380 5.33660 5.39256 5.40612 5.42601 5.64827 5.70277 5.74312 6.34181 6.53776 6.66927 7.17433 7.27056 7.90184 8.36139 9.25684 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.005561 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.136776 B = 5033.575226 C = 6110.151297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 N -0.486 5.486 4 C 0.142 3.858 5 C -0.042 4.042 6 C -0.081 4.081 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.316 4.316 10 C 0.591 3.409 11 O -0.566 6.566 12 N -0.683 5.683 13 C 0.121 3.879 14 H 0.045 0.955 15 C -0.146 4.146 16 C 0.141 3.859 17 N -0.612 5.612 18 C 0.181 3.819 19 C -0.248 4.248 20 H 0.077 0.923 21 C -0.040 4.040 22 N -0.932 5.932 23 Si 0.935 3.065 24 H -0.280 1.280 25 H -0.307 1.307 26 H -0.255 1.255 27 S 0.172 5.828 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.077 0.923 46 H -0.010 1.010 47 H 0.019 0.981 48 H 0.028 0.972 49 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 5.515 -11.309 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.217 4.217 3 N -0.202 5.202 4 C 0.003 3.997 5 C -0.081 4.081 6 C -0.101 4.101 7 C -0.191 4.191 8 C -0.191 4.191 9 C -0.440 4.440 10 C 0.377 3.623 11 O -0.449 6.449 12 N -0.331 5.331 13 C 0.014 3.986 14 H 0.064 0.936 15 C -0.205 4.205 16 C 0.014 3.986 17 N -0.334 5.334 18 C 0.035 3.965 19 C -0.378 4.378 20 H 0.095 0.905 21 C -0.236 4.236 22 N -0.578 5.578 23 Si 0.764 3.236 24 H -0.206 1.206 25 H -0.234 1.234 26 H -0.179 1.179 27 S 0.430 5.570 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.009 0.991 47 H 0.038 0.962 48 H 0.046 0.954 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.441 5.432 -11.154 13.547 hybrid contribution -0.439 0.114 1.057 1.150 sum -5.880 5.545 -10.097 12.933 Atomic orbital electron populations 1.20743 0.81618 1.05596 1.05953 1.28172 1.03692 0.90584 0.99296 1.66139 1.03831 1.31616 1.18605 1.20762 0.90539 0.93395 0.94964 1.20465 0.96085 0.93392 0.98186 1.20888 0.96847 0.97998 0.94344 1.21708 0.97358 0.97841 1.02170 1.21753 0.96304 1.00878 1.00153 1.25513 0.98534 0.97997 1.21929 1.16866 0.86208 0.83130 0.76137 1.90669 1.45238 1.55649 1.53319 1.45695 1.09896 1.05353 1.72150 1.21812 0.81439 0.98315 0.97024 0.93641 1.22032 1.02248 1.01505 0.94708 1.21408 0.98477 0.92860 0.85887 1.44115 1.05379 1.82510 1.01402 1.20474 0.90431 0.96766 0.88785 1.19320 0.85160 1.27717 1.05626 0.90525 1.25582 1.00530 0.97958 0.99491 1.70253 1.38003 1.33973 1.15605 0.85803 0.82284 0.77952 0.77605 1.20601 1.23359 1.17915 1.84030 0.95901 1.11365 1.65712 0.86660 0.88492 0.88111 0.89440 0.88951 0.95338 0.90579 0.92228 0.93296 0.94657 0.92747 0.90820 0.76391 0.91217 0.94038 0.89651 0.91489 0.90440 0.99137 0.96236 0.95395 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.46 71.24 0.75 -0.63 16 2 C 0.06 1.62 7.39 88.46 0.65 2.27 16 3 N -0.49 -15.64 9.64 -178.29 -1.72 -17.36 16 4 C 0.14 5.09 5.32 42.09 0.22 5.32 16 5 C -0.04 -1.38 4.50 29.85 0.13 -1.25 16 6 C -0.08 -2.70 2.91 -10.79 -0.03 -2.73 16 7 C -0.13 -3.62 9.19 71.98 0.66 -2.96 16 8 C -0.13 -3.97 8.97 71.98 0.65 -3.32 16 9 C -0.32 -12.21 6.48 23.88 0.15 -12.06 16 10 C 0.59 25.15 7.74 86.45 0.67 25.81 16 11 O -0.57 -26.05 13.93 -4.30 -0.06 -26.11 16 12 N -0.68 -27.28 4.48 -446.50 -2.00 -29.28 16 13 C 0.12 4.48 2.88 44.99 0.13 4.61 16 14 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.15 -4.14 9.48 71.98 0.68 -3.46 16 16 C 0.14 5.12 5.36 86.38 0.46 5.58 16 17 N -0.61 -28.63 2.82 -726.94 -2.05 -30.68 16 18 C 0.18 8.91 9.01 127.77 1.15 10.06 16 19 C -0.25 -12.34 8.02 84.03 0.67 -11.67 16 20 H 0.08 3.58 7.84 -2.91 -0.02 3.56 16 21 C -0.04 -2.12 5.13 84.86 0.44 -1.69 16 22 N -0.93 -54.41 10.59 21.65 0.23 -54.18 16 23 Si 0.94 42.34 29.57 68.60 2.03 44.37 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.31 -14.63 7.11 99.48 0.71 -13.93 16 26 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 27 S 0.17 5.55 22.31 -56.49 -1.26 4.29 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 3.18 6.01 -2.39 -0.01 3.17 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 1.17 6.75 -2.39 -0.02 1.16 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.40 15.81 6.58 -92.71 -0.61 15.19 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 45 H 0.08 2.47 7.86 -2.39 -0.02 2.45 16 46 H -0.01 -0.55 7.42 -2.39 -0.02 -0.57 16 47 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 48 H 0.03 1.16 7.84 -2.38 -0.02 1.14 16 49 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.66 404.77 2.89 -64.78 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.32 Total: 30.27 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.39 Total: 13.90 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.54 Total: -131.50 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.06 Total: -26.11 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.26 Total: 4.29 kcal Total: -67.66 2.89 -64.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.945 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds