Wall clock time and date at job start Tue Mar 31 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30939 * 122.90105 * 2 1 4 4 C 1.29434 * 117.36177 * 180.02562 * 3 2 1 5 5 C 1.50701 * 124.80255 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47166 * 59.97239 * 5 4 3 7 7 C 1.53002 * 109.46825 * 179.97438 * 5 4 3 8 8 C 1.52995 * 109.47254 * 299.97044 * 5 4 3 9 9 S 1.70952 * 110.39002 * 359.97438 * 4 3 2 10 10 C 1.35657 * 122.90425 * 180.02562 * 2 1 3 11 11 C 1.46684 * 126.13132 * 0.23152 * 10 2 1 12 12 O 1.21687 * 119.99796 * 350.99754 * 11 10 2 13 13 N 1.34771 * 119.99886 * 170.99866 * 11 10 2 14 14 C 1.46494 * 120.00374 * 0.48005 * 13 11 10 15 15 C 1.46502 * 119.99803 * 180.47662 * 13 11 10 16 16 C 1.53005 * 109.47070 * 90.00145 * 15 13 11 17 17 N 1.46502 * 109.47070 * 179.97438 * 16 15 13 18 18 C 1.46501 * 119.99883 * 269.99645 * 17 16 15 19 19 C 1.36934 * 119.99966 * 90.00323 * 17 16 15 20 20 H 1.07998 * 120.00294 * 24.70060 * 19 17 16 21 21 C 1.38811 * 119.99805 * 204.70662 * 19 17 16 22 22 N 1.31618 * 119.99865 * 6.54156 * 21 19 17 23 23 Si 1.86794 * 120.00242 * 186.53716 * 21 19 17 24 24 H 1.48504 * 109.47059 * 59.99877 * 23 21 19 25 25 H 1.48498 * 109.47716 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47296 * 300.00620 * 23 21 19 27 27 H 1.09004 * 109.47589 * 269.96346 * 1 2 3 28 28 H 1.09001 * 109.47287 * 29.96426 * 1 2 3 29 29 H 1.09000 * 109.47340 * 149.96731 * 1 2 3 30 30 H 1.08999 * 109.46734 * 60.00277 * 6 5 4 31 31 H 1.08993 * 109.46659 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47250 * 299.99801 * 6 5 4 33 33 H 1.09006 * 109.46782 * 60.00407 * 7 5 4 34 34 H 1.08998 * 109.46895 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47188 * 300.00094 * 7 5 4 36 36 H 1.09009 * 109.47110 * 60.00396 * 8 5 4 37 37 H 1.09000 * 109.47155 * 179.97438 * 8 5 4 38 38 H 1.08997 * 109.47360 * 300.00283 * 8 5 4 39 39 H 1.09000 * 109.47631 * 83.38289 * 14 13 11 40 40 H 1.08999 * 109.47546 * 203.39034 * 14 13 11 41 41 H 1.09004 * 109.47006 * 323.38697 * 14 13 11 42 42 H 1.08996 * 109.47291 * 209.99752 * 15 13 11 43 43 H 1.08994 * 109.47249 * 330.00118 * 15 13 11 44 44 H 1.08998 * 109.47245 * 300.00041 * 16 15 13 45 45 H 1.09002 * 109.46834 * 59.99871 * 16 15 13 46 46 H 1.09004 * 109.46837 * 95.03192 * 18 17 16 47 47 H 1.08996 * 109.46923 * 215.03145 * 18 17 16 48 48 H 1.09000 * 109.47148 * 335.03396 * 18 17 16 49 49 H 0.97004 * 119.99940 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4821 2.1231 0.0000 6 6 4.2625 2.9783 1.2496 7 6 5.9117 1.5779 -0.0003 8 6 4.2626 2.9791 -1.2489 9 16 3.9447 -0.6780 -0.0004 10 6 2.2440 -1.1390 -0.0005 11 6 1.7191 -2.5087 -0.0059 12 8 0.5289 -2.7048 0.1544 13 7 2.5552 -3.5499 -0.1884 14 6 3.9895 -3.3144 -0.3709 15 6 2.0295 -4.9173 -0.2043 16 6 1.6499 -5.3012 -1.6359 17 7 1.1248 -6.6688 -1.6518 18 6 2.0340 -7.8002 -1.8505 19 6 -0.2158 -6.8895 -1.4811 20 1 -0.9264 -6.1148 -1.7283 21 6 -0.6614 -8.1090 -0.9901 22 7 0.2055 -9.0049 -0.5680 23 14 -2.4914 -8.4787 -0.9285 24 1 -3.0554 -8.4168 -2.3009 25 1 -2.7034 -9.8372 -0.3676 26 1 -3.1703 -7.4761 -0.0687 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4190 2.3683 2.1393 31 1 4.9684 3.8087 1.2500 32 1 3.2441 3.3666 1.2497 33 1 6.0681 0.9687 -0.8906 34 1 6.6173 2.4087 -0.0004 35 1 6.0681 0.9680 0.8894 36 1 3.2441 3.3676 -1.2488 37 1 4.9680 3.8102 -1.2484 38 1 4.4191 2.3699 -2.1391 39 1 4.4666 -3.2046 0.6029 40 1 4.4321 -4.1589 -0.8992 41 1 4.1372 -2.4044 -0.9525 42 1 2.7910 -5.6036 0.1661 43 1 1.1474 -4.9748 0.4334 44 1 0.8884 -4.6149 -2.0063 45 1 2.5321 -5.2436 -2.2735 46 1 2.3296 -8.2032 -0.8818 47 1 1.5292 -8.5749 -2.4276 48 1 2.9196 -7.4643 -2.3898 49 1 -0.1059 -9.8569 -0.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716038253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:55 Heat of formation + Delta-G solvation = 28.912481 kcal Electronic energy + Delta-G solvation = -27758.779473 eV Core-core repulsion = 24041.709392 eV Total energy + Delta-G solvation = -3717.070081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.44682 -39.35699 -37.07560 -36.04003 -34.94881 -31.73033 -31.22566 -29.27500 -27.94117 -27.80271 -27.63071 -26.45945 -25.82144 -25.05930 -23.63484 -21.20686 -20.29838 -20.12560 -18.38545 -17.97263 -16.81928 -16.45259 -16.01976 -15.82590 -15.18481 -14.92983 -14.59245 -14.33697 -14.11256 -13.92693 -13.64915 -13.47596 -13.17672 -13.05156 -13.00719 -12.73333 -12.57296 -12.46921 -12.30749 -12.23280 -12.06613 -11.92926 -11.76128 -11.40970 -11.39025 -11.30834 -11.23937 -10.83680 -10.80555 -10.50791 -10.14307 -9.95137 -9.80799 -9.72406 -9.53887 -9.39320 -8.89408 -8.55833 -8.35181 -6.71474 -5.69635 -3.17593 0.23142 1.12982 1.54494 2.45761 3.12945 3.32190 3.44744 3.47866 3.50859 3.69587 4.35528 4.48986 4.54455 4.58110 4.65709 4.93535 4.96260 5.09336 5.15020 5.22280 5.23939 5.35981 5.45491 5.47440 5.50377 5.52327 5.53405 5.64660 5.67663 5.73732 5.78760 5.80540 5.88005 5.91091 5.96091 6.20764 6.26505 6.37259 6.56863 6.73220 6.73650 7.01533 7.40063 7.50530 7.64503 7.74762 7.86932 8.32699 8.44892 9.28091 9.88541 10.37250 11.35292 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.002593 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.510183 B =10794.265507 C =11628.282432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.146 3.854 3 N -0.477 5.477 4 C 0.040 3.960 5 C 0.008 3.992 6 C -0.134 4.134 7 C -0.155 4.155 8 C -0.134 4.134 9 S 0.184 5.816 10 C -0.300 4.300 11 C 0.586 3.414 12 O -0.514 6.514 13 N -0.606 5.606 14 C 0.066 3.934 15 C 0.095 3.905 16 C 0.144 3.856 17 N -0.599 5.599 18 C 0.164 3.836 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.912 5.912 23 Si 0.907 3.093 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.045 0.955 48 H -0.006 1.006 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.029 22.744 1.342 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.009 3.991 3 N -0.191 5.191 4 C -0.235 4.235 5 C 0.005 3.995 6 C -0.192 4.192 7 C -0.213 4.213 8 C -0.193 4.193 9 S 0.444 5.556 10 C -0.423 4.423 11 C 0.373 3.627 12 O -0.391 6.391 13 N -0.339 5.339 14 C -0.079 4.079 15 C -0.028 4.028 16 C 0.015 3.985 17 N -0.322 5.322 18 C 0.019 3.981 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.557 5.557 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.013 0.987 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.130 22.385 1.480 27.059 hybrid contribution -1.674 -0.292 0.220 1.713 sum 13.456 22.093 1.699 25.924 Atomic orbital electron populations 1.20599 0.86121 1.04109 1.03629 1.20602 0.98508 0.85095 0.94900 1.66019 1.04598 1.31527 1.16997 1.27862 0.94592 1.00588 1.00472 1.19259 0.91312 0.90871 0.98079 1.21832 1.02942 0.99011 0.95465 1.22043 0.94522 1.01970 1.02776 1.21837 1.02946 0.99011 0.95491 1.84241 1.05582 0.99073 1.66696 1.25641 0.96176 0.99387 1.21130 1.16771 0.86077 0.82264 0.77636 1.90841 1.14538 1.84267 1.49479 1.47917 1.06985 1.07779 1.71236 1.21986 0.82081 1.02066 1.01812 1.22723 0.99891 0.77625 1.02611 1.21127 0.96626 0.87969 0.92752 1.43935 1.04835 0.99821 1.83576 1.20850 0.89535 0.89283 0.98391 1.19212 0.82334 0.99908 1.36690 0.91325 1.25103 0.97776 0.97970 0.98658 1.70033 1.32148 1.07595 1.45953 0.86297 0.85055 0.77114 0.77886 1.21033 1.21640 1.20757 0.90160 0.91056 0.88429 0.92501 0.91612 0.91402 0.91719 0.90606 0.91734 0.91405 0.91632 0.92454 0.91983 0.88925 0.91378 0.91114 0.89271 0.93470 0.94684 0.95178 0.93575 0.98709 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.60 36.01 0.35 -0.84 16 2 C 0.15 2.12 6.79 -83.89 -0.57 1.55 16 3 N -0.48 -6.30 10.48 -7.70 -0.08 -6.38 16 4 C 0.04 0.43 5.78 -13.29 -0.08 0.35 16 5 C 0.01 0.06 0.99 -155.66 -0.15 -0.09 16 6 C -0.13 -0.96 8.45 37.16 0.31 -0.64 16 7 C -0.16 -0.88 7.53 37.16 0.28 -0.60 16 8 C -0.13 -0.96 8.45 37.16 0.31 -0.65 16 9 S 0.18 1.91 16.49 -107.50 -1.77 0.14 16 10 C -0.30 -4.40 6.24 -37.10 -0.23 -4.63 16 11 C 0.59 10.28 7.60 -12.85 -0.10 10.18 16 12 O -0.51 -10.79 13.99 5.20 0.07 -10.72 16 13 N -0.61 -9.78 2.87 -183.13 -0.53 -10.31 16 14 C 0.07 0.75 8.95 59.84 0.54 1.29 16 15 C 0.10 1.85 5.70 -4.04 -0.02 1.83 16 16 C 0.14 3.07 6.03 -4.04 -0.02 3.05 16 17 N -0.60 -15.38 2.92 -181.12 -0.53 -15.91 16 18 C 0.16 4.03 9.00 59.85 0.54 4.57 16 19 C -0.25 -7.15 9.67 -15.06 -0.15 -7.30 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 0.08 5.22 -17.43 -0.09 -0.01 16 22 N -0.91 -26.77 10.48 55.49 0.58 -26.19 16 23 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.53 6.23 -51.93 -0.32 1.21 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.61 7.81 -51.93 -0.41 0.20 16 40 H 0.09 0.94 8.02 -51.93 -0.42 0.53 16 41 H 0.07 0.70 4.63 -23.81 -0.11 0.59 16 42 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.09 2.06 7.41 -51.93 -0.38 1.67 16 44 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 45 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 46 H 0.03 0.79 7.34 -51.93 -0.38 0.40 16 47 H 0.05 1.22 7.27 -51.93 -0.38 0.85 16 48 H -0.01 -0.12 7.83 -51.93 -0.41 -0.53 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -32.99 399.89 -8.56 -41.56 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -8.22 Total: -3.85 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.91 Total: 8.07 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.55 Total: -58.79 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.77 Total: 0.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.99 -8.56 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716038253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.469 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds