Wall clock time and date at job start Tue Mar 31 2020 22:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30939 * 122.90105 * 2 1 4 4 C 1.29434 * 117.36177 * 180.02562 * 3 2 1 5 5 C 1.50701 * 124.80255 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47166 * 59.97239 * 5 4 3 7 7 C 1.53002 * 109.46825 * 179.97438 * 5 4 3 8 8 C 1.52995 * 109.47254 * 299.97044 * 5 4 3 9 9 S 1.70952 * 110.39002 * 359.97438 * 4 3 2 10 10 C 1.35657 * 122.90425 * 180.02562 * 2 1 3 11 11 C 1.46684 * 126.13132 * 0.23152 * 10 2 1 12 12 O 1.21687 * 119.99796 * 350.99754 * 11 10 2 13 13 N 1.34771 * 119.99886 * 170.99866 * 11 10 2 14 14 C 1.46494 * 120.00374 * 0.48005 * 13 11 10 15 15 C 1.46502 * 119.99803 * 180.47662 * 13 11 10 16 16 C 1.53005 * 109.47070 * 90.00145 * 15 13 11 17 17 N 1.46502 * 109.47070 * 179.97438 * 16 15 13 18 18 C 1.46501 * 119.99883 * 269.99645 * 17 16 15 19 19 C 1.36934 * 119.99966 * 90.00323 * 17 16 15 20 20 H 1.07998 * 120.00294 * 24.70060 * 19 17 16 21 21 C 1.38811 * 119.99805 * 204.70662 * 19 17 16 22 22 N 1.31618 * 119.99865 * 6.54156 * 21 19 17 23 23 Si 1.86794 * 120.00242 * 186.53716 * 21 19 17 24 24 H 1.48504 * 109.47059 * 59.99877 * 23 21 19 25 25 H 1.48498 * 109.47716 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47296 * 300.00620 * 23 21 19 27 27 H 1.09004 * 109.47589 * 269.96346 * 1 2 3 28 28 H 1.09001 * 109.47287 * 29.96426 * 1 2 3 29 29 H 1.09000 * 109.47340 * 149.96731 * 1 2 3 30 30 H 1.08999 * 109.46734 * 60.00277 * 6 5 4 31 31 H 1.08993 * 109.46659 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47250 * 299.99801 * 6 5 4 33 33 H 1.09006 * 109.46782 * 60.00407 * 7 5 4 34 34 H 1.08998 * 109.46895 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47188 * 300.00094 * 7 5 4 36 36 H 1.09009 * 109.47110 * 60.00396 * 8 5 4 37 37 H 1.09000 * 109.47155 * 179.97438 * 8 5 4 38 38 H 1.08997 * 109.47360 * 300.00283 * 8 5 4 39 39 H 1.09000 * 109.47631 * 83.38289 * 14 13 11 40 40 H 1.08999 * 109.47546 * 203.39034 * 14 13 11 41 41 H 1.09004 * 109.47006 * 323.38697 * 14 13 11 42 42 H 1.08996 * 109.47291 * 209.99752 * 15 13 11 43 43 H 1.08994 * 109.47249 * 330.00118 * 15 13 11 44 44 H 1.08998 * 109.47245 * 300.00041 * 16 15 13 45 45 H 1.09002 * 109.46834 * 59.99871 * 16 15 13 46 46 H 1.09004 * 109.46837 * 95.03192 * 18 17 16 47 47 H 1.08996 * 109.46923 * 215.03145 * 18 17 16 48 48 H 1.09000 * 109.47148 * 335.03396 * 18 17 16 49 49 H 0.97004 * 119.99940 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 6 4.4821 2.1231 0.0000 6 6 4.2625 2.9783 1.2496 7 6 5.9117 1.5779 -0.0003 8 6 4.2626 2.9791 -1.2489 9 16 3.9447 -0.6780 -0.0004 10 6 2.2440 -1.1390 -0.0005 11 6 1.7191 -2.5087 -0.0059 12 8 0.5289 -2.7048 0.1544 13 7 2.5552 -3.5499 -0.1884 14 6 3.9895 -3.3144 -0.3709 15 6 2.0295 -4.9173 -0.2043 16 6 1.6499 -5.3012 -1.6359 17 7 1.1248 -6.6688 -1.6518 18 6 2.0340 -7.8002 -1.8505 19 6 -0.2158 -6.8895 -1.4811 20 1 -0.9264 -6.1148 -1.7283 21 6 -0.6614 -8.1090 -0.9901 22 7 0.2055 -9.0049 -0.5680 23 14 -2.4914 -8.4787 -0.9285 24 1 -3.0554 -8.4168 -2.3009 25 1 -2.7034 -9.8372 -0.3676 26 1 -3.1703 -7.4761 -0.0687 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3634 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4190 2.3683 2.1393 31 1 4.9684 3.8087 1.2500 32 1 3.2441 3.3666 1.2497 33 1 6.0681 0.9687 -0.8906 34 1 6.6173 2.4087 -0.0004 35 1 6.0681 0.9680 0.8894 36 1 3.2441 3.3676 -1.2488 37 1 4.9680 3.8102 -1.2484 38 1 4.4191 2.3699 -2.1391 39 1 4.4666 -3.2046 0.6029 40 1 4.4321 -4.1589 -0.8992 41 1 4.1372 -2.4044 -0.9525 42 1 2.7910 -5.6036 0.1661 43 1 1.1474 -4.9748 0.4334 44 1 0.8884 -4.6149 -2.0063 45 1 2.5321 -5.2436 -2.2735 46 1 2.3296 -8.2032 -0.8818 47 1 1.5292 -8.5749 -2.4276 48 1 2.9196 -7.4643 -2.3898 49 1 -0.1059 -9.8569 -0.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716038253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:54 Heat of formation + Delta-G solvation = 8.860241 kcal Electronic energy + Delta-G solvation = -27759.649003 eV Core-core repulsion = 24041.709392 eV Total energy + Delta-G solvation = -3717.939611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53852 -40.55395 -37.97332 -37.58926 -36.54117 -33.57418 -32.44124 -30.82488 -29.12448 -28.30787 -28.17219 -27.93933 -27.68004 -25.99833 -25.25973 -22.83340 -21.70529 -21.00664 -19.53843 -18.95249 -18.83565 -17.68818 -17.22594 -17.05418 -16.66590 -16.13579 -15.81900 -15.56439 -15.10339 -15.04920 -14.97579 -14.80131 -14.52867 -14.27781 -14.17844 -14.05603 -13.81607 -13.55234 -13.20064 -13.15798 -13.07651 -12.95343 -12.80009 -12.76600 -12.59060 -12.51844 -12.45917 -12.25352 -12.10039 -12.03925 -11.94336 -11.89661 -11.63040 -11.06805 -10.69694 -10.53982 -10.35944 -10.08561 -9.54954 -8.77003 -7.86671 -5.36861 -0.78112 0.17846 0.58999 1.37979 1.42773 1.45316 1.51679 1.84833 2.07493 2.48846 2.88213 3.27965 3.47088 3.67494 3.74856 3.94559 3.95642 4.00357 4.04659 4.16202 4.28725 4.32281 4.55667 4.59543 4.62628 4.66848 4.68794 4.71645 4.76426 4.82418 4.85380 4.86275 4.94211 4.98103 4.98884 5.04952 5.10122 5.21904 5.29560 5.34964 5.37050 5.41885 5.44643 5.61489 5.74614 6.22978 6.31998 6.64833 7.00631 7.14096 7.82968 8.24327 9.15583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.002593 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.510183 B =10794.265507 C =11628.282432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.141 3.859 3 N -0.498 5.498 4 C 0.041 3.959 5 C 0.005 3.995 6 C -0.132 4.132 7 C -0.156 4.156 8 C -0.132 4.132 9 S 0.260 5.740 10 C -0.340 4.340 11 C 0.581 3.419 12 O -0.564 6.564 13 N -0.605 5.605 14 C 0.058 3.942 15 C 0.115 3.885 16 C 0.149 3.851 17 N -0.616 5.616 18 C 0.177 3.823 19 C -0.265 4.265 20 H 0.056 0.944 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.283 1.283 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.068 0.932 46 H 0.010 0.990 47 H 0.018 0.982 48 H 0.036 0.964 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.216 24.536 1.062 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.002 3.998 3 N -0.213 5.213 4 C -0.233 4.233 5 C 0.001 3.999 6 C -0.191 4.191 7 C -0.214 4.214 8 C -0.191 4.191 9 S 0.522 5.478 10 C -0.464 4.464 11 C 0.369 3.631 12 O -0.445 6.445 13 N -0.337 5.337 14 C -0.086 4.086 15 C -0.010 4.010 16 C 0.022 3.978 17 N -0.340 5.340 18 C 0.033 3.967 19 C -0.396 4.396 20 H 0.074 0.926 21 C -0.241 4.241 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.210 1.210 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.054 0.946 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.387 24.205 1.188 30.420 hybrid contribution -2.540 -0.687 0.283 2.646 sum 15.847 23.519 1.471 28.398 Atomic orbital electron populations 1.20501 0.86701 1.03518 1.03429 1.20707 0.98770 0.85728 0.94620 1.66088 1.05706 1.30917 1.18586 1.28659 0.94515 1.02266 0.97859 1.19529 0.91745 0.90008 0.98620 1.21835 1.02622 0.99643 0.94985 1.22098 0.93141 1.03013 1.03161 1.21839 1.02618 0.99641 0.95012 1.83744 1.01201 0.97655 1.65170 1.25442 0.99596 0.97702 1.23612 1.17201 0.85612 0.83576 0.76707 1.90808 1.16783 1.85271 1.51654 1.47850 1.09007 1.06053 1.70821 1.22328 0.78952 1.03593 1.03698 1.22117 0.98728 0.79905 1.00217 1.21140 0.96963 0.85443 0.94300 1.44116 1.04315 1.01595 1.83948 1.20636 0.90256 0.88474 0.97360 1.19360 0.83853 0.99774 1.36583 0.92581 1.25774 1.01592 0.97923 0.98804 1.70175 1.33471 1.07649 1.46658 0.85385 0.80603 0.76747 0.77974 1.20259 1.21191 1.20953 0.90214 0.89606 0.90868 0.92723 0.89097 0.93189 0.91249 0.88307 0.91368 0.93195 0.89137 0.92615 0.89721 0.86896 0.90121 0.89752 0.93777 0.95745 0.91361 0.97138 0.96356 0.94577 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.42 9.60 71.24 0.68 -1.73 16 2 C 0.14 4.14 6.79 42.09 0.29 4.42 16 3 N -0.50 -12.82 10.48 -178.29 -1.87 -14.69 16 4 C 0.04 0.80 5.78 88.46 0.51 1.31 16 5 C 0.00 0.06 0.99 -52.93 -0.05 0.01 16 6 C -0.13 -1.55 8.45 71.98 0.61 -0.94 16 7 C -0.16 -1.11 7.53 71.98 0.54 -0.57 16 8 C -0.13 -1.54 8.45 71.98 0.61 -0.93 16 9 S 0.26 4.74 16.49 -56.49 -0.93 3.81 16 10 C -0.34 -9.89 6.24 23.88 0.15 -9.75 16 11 C 0.58 20.89 7.60 86.45 0.66 21.55 16 12 O -0.56 -25.32 13.99 -4.31 -0.06 -25.38 16 13 N -0.61 -19.20 2.87 -851.52 -2.45 -21.65 16 14 C 0.06 1.14 8.95 127.77 1.14 2.28 16 15 C 0.12 4.53 5.70 86.38 0.49 5.02 16 16 C 0.15 6.36 6.03 86.38 0.52 6.88 16 17 N -0.62 -31.99 2.92 -726.92 -2.13 -34.11 16 18 C 0.18 8.66 9.00 127.77 1.15 9.81 16 19 C -0.27 -15.49 9.67 84.03 0.81 -14.68 16 20 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 21 C -0.05 -2.65 5.22 84.86 0.44 -2.21 16 22 N -0.93 -55.76 10.48 21.65 0.23 -55.53 16 23 Si 0.96 47.38 29.56 68.60 2.03 49.40 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.50 6.23 -2.39 -0.01 2.49 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.45 7.92 -2.38 -0.02 0.43 16 34 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 0.46 7.92 -2.39 -0.02 0.44 16 36 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.34 7.81 -2.39 -0.02 1.32 16 40 H 0.11 1.83 8.02 -2.39 -0.02 1.81 16 41 H 0.08 1.39 4.63 -20.26 -0.09 1.30 16 42 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 43 H 0.04 2.14 7.41 -2.39 -0.02 2.12 16 44 H 0.02 1.14 8.04 -2.39 -0.02 1.12 16 45 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 46 H 0.01 0.54 7.34 -2.39 -0.02 0.53 16 47 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 48 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -75.47 399.89 4.22 -71.25 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.84 Total: 6.42 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 8.56 Total: 20.48 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -6.21 Total: -125.98 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -0.93 Total: 3.81 kcal Total: -75.47 4.22 -71.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716038253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.112 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds