Wall clock time and date at job start Tue Mar 31 2020 23:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00050 * 2 1 4 4 N 1.46899 * 109.47055 * 124.99820 * 3 2 1 5 5 C 1.47845 * 111.00141 * 69.16061 * 4 3 2 6 6 C 1.55109 * 104.90991 * 146.23962 * 5 4 3 7 7 C 1.55150 * 101.55808 * 323.15393 * 6 5 4 8 8 H 1.08996 * 110.70671 * 276.97104 * 7 6 5 9 9 N 1.46902 * 110.70520 * 153.90380 * 7 6 5 10 10 C 1.46898 * 110.99688 * 63.81246 * 9 7 6 11 11 C 1.53243 * 109.33841 * 187.25251 * 10 9 7 12 12 N 1.47079 * 108.52023 * 306.16783 * 11 10 9 13 13 C 1.34773 * 120.87963 * 231.18929 * 12 11 10 14 14 O 1.21283 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99721 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46942 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00017 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00294 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00153 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00093 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 90.00077 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00257 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00251 * 21 19 17 25 25 C 1.47082 * 118.23464 * 51.45710 * 12 11 10 26 26 C 1.46898 * 110.99909 * 188.10811 * 9 7 6 27 27 C 1.47449 * 111.00008 * 189.99623 * 4 3 2 28 28 H 1.08006 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00551 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99930 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47088 * 4.99600 * 3 2 1 32 32 H 1.09003 * 109.47020 * 245.00097 * 3 2 1 33 33 H 1.09006 * 110.37033 * 265.19196 * 5 4 3 34 34 H 1.09000 * 110.37572 * 27.52757 * 5 4 3 35 35 H 1.08999 * 111.14769 * 205.04890 * 6 5 4 36 36 H 1.09002 * 110.92688 * 81.15974 * 6 5 4 37 37 H 1.08999 * 109.49478 * 67.28723 * 10 9 7 38 38 H 1.09000 * 109.49127 * 307.20488 * 10 9 7 39 39 H 1.08998 * 109.62883 * 186.45852 * 11 10 9 40 40 H 1.08999 * 109.78638 * 65.97380 * 11 10 9 41 41 H 1.08997 * 109.46935 * 60.00104 * 15 13 12 42 42 H 1.09000 * 109.47082 * 299.99666 * 15 13 12 43 43 H 0.97006 * 119.99745 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.62853 * 68.25707 * 25 12 11 45 45 H 1.09004 * 109.62104 * 188.83615 * 25 12 11 46 46 H 1.08997 * 109.49231 * 292.71200 * 26 9 7 47 47 H 1.09005 * 109.49101 * 52.79037 * 26 9 7 48 48 H 1.08998 * 109.88787 * 117.33596 * 27 4 3 49 49 H 1.09001 * 110.02162 * 356.22928 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 4.0976 0.3654 0.9380 6 6 5.3344 1.0303 1.5969 7 6 5.1110 2.5238 1.2410 8 1 5.4751 2.7393 0.2365 9 7 5.7639 3.3959 2.2264 10 6 7.2215 3.2143 2.2060 11 6 7.8471 4.0003 3.3632 12 7 7.3931 5.3968 3.2787 13 6 8.2762 6.4144 3.3114 14 8 9.4628 6.1846 3.4121 15 6 7.7892 7.8378 3.2228 16 16 9.2037 8.9648 3.2922 17 6 8.3686 10.5117 3.1730 18 1 7.2922 10.5392 3.0884 19 6 9.0941 11.6950 3.1866 20 7 8.4702 12.8506 3.0971 21 14 10.9558 11.6475 3.3322 22 1 11.5569 11.5849 1.9757 23 1 11.3612 10.4485 4.1089 24 1 11.4294 12.8711 4.0275 25 6 5.9494 5.6534 3.1637 26 6 5.3991 4.8021 2.0085 27 6 3.5769 2.6760 1.3095 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.8660 -0.5791 1.4304 34 1 4.2773 0.2059 -0.1252 35 1 6.2607 0.6589 1.1587 36 1 5.3276 0.8811 2.6766 37 1 7.6205 3.5802 1.2600 38 1 7.4577 2.1559 2.3158 39 1 8.9337 3.9632 3.2859 40 1 7.5328 3.5700 4.3141 41 1 7.1180 8.0447 4.0563 42 1 7.2563 7.9816 2.2828 43 1 8.9773 13.6775 3.1070 44 1 5.4533 5.3780 4.0943 45 1 5.7810 6.7098 2.9543 46 1 5.8235 5.1459 1.0652 47 1 4.3136 4.8952 1.9748 48 1 3.2874 3.0816 2.2789 49 1 3.2339 3.3372 0.5137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716832545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:25 Heat of formation + Delta-G solvation = 10.634223 kcal Electronic energy + Delta-G solvation = -27012.540721 eV Core-core repulsion = 23294.678036 eV Total energy + Delta-G solvation = -3717.862686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43211 -39.43021 -37.60065 -35.24982 -33.83170 -32.44858 -31.80550 -30.93875 -29.36429 -28.91217 -26.52863 -25.61570 -25.16045 -23.87827 -21.87472 -21.47617 -20.60927 -19.98491 -19.13207 -17.78428 -17.09722 -16.70304 -16.24722 -15.73976 -15.63730 -15.46232 -15.18191 -14.96366 -14.72998 -14.48394 -14.02230 -13.89411 -13.76032 -13.57455 -13.34531 -12.96792 -12.80980 -12.73104 -12.57104 -12.26032 -12.03550 -11.90229 -11.66640 -11.52710 -11.31513 -11.26965 -11.22218 -11.18459 -11.01948 -10.98714 -10.59448 -9.92850 -9.86671 -9.48502 -9.01609 -8.93287 -8.70114 -8.50383 -8.46701 -6.93226 -6.29990 -4.01790 1.83647 2.68253 2.91468 3.14948 3.32104 3.41012 3.49895 3.58423 3.68686 4.04353 4.31986 4.33248 4.47372 4.51280 4.59868 4.67791 4.76535 4.80226 4.88214 4.91976 4.97347 4.99987 5.06377 5.08557 5.09677 5.18181 5.22619 5.24414 5.38402 5.43225 5.45708 5.46688 5.51419 5.59019 5.67443 5.70517 5.74628 5.76907 5.88780 5.97167 6.17456 6.30974 6.48942 6.51105 6.59946 6.69676 6.70783 7.46503 7.92979 8.40148 8.42148 9.16260 10.79150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.001981 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.247513 B =14133.043712 C =15012.480038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.074 3.926 4 N -0.521 5.521 5 C 0.043 3.957 6 C -0.121 4.121 7 C 0.063 3.937 8 H 0.047 0.953 9 N -0.524 5.524 10 C 0.043 3.957 11 C 0.119 3.881 12 N -0.621 5.621 13 C 0.534 3.466 14 O -0.520 6.520 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.274 1.274 25 C 0.113 3.887 26 C 0.038 3.962 27 C 0.049 3.951 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 -27.206 -5.662 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.164 4.164 3 C -0.054 4.054 4 N -0.245 5.245 5 C -0.085 4.085 6 C -0.159 4.159 7 C -0.047 4.047 8 H 0.065 0.935 9 N -0.249 5.249 10 C -0.086 4.086 11 C -0.004 4.004 12 N -0.357 5.357 13 C 0.322 3.678 14 O -0.395 6.395 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.199 1.199 25 C -0.010 4.010 26 C -0.091 4.091 27 C -0.079 4.079 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.298 -27.580 -4.618 30.549 hybrid contribution -0.081 0.993 -1.744 2.009 sum -12.379 -26.587 -6.362 30.009 Atomic orbital electron populations 1.23825 0.95802 1.01949 1.00636 1.22771 0.95908 0.97900 0.99810 1.21487 0.95501 0.96460 0.91909 1.63673 1.15696 1.05230 1.39909 1.23090 0.89713 0.96668 0.99037 1.22815 0.97354 0.93107 1.02609 1.22861 0.94692 0.93603 0.93527 0.93515 1.62034 1.08355 1.05745 1.48805 1.22503 0.87041 1.00817 0.98224 1.21598 1.00488 0.80357 0.97927 1.48136 1.06830 1.05944 1.74800 1.20308 0.85868 0.86468 0.75198 1.90686 1.16012 1.84630 1.48151 1.23303 1.04501 0.93896 1.05468 1.84799 1.09678 1.00387 1.96778 1.22307 0.96741 0.89515 1.58309 0.89391 1.24710 0.99093 0.94281 0.93202 1.69940 1.36408 0.97392 1.47907 0.86737 0.85173 0.79871 0.80083 1.19250 1.15918 1.19914 1.21922 0.80250 1.00204 0.98667 1.22629 1.01135 0.87704 0.97639 1.22906 0.92001 0.90264 1.02696 0.88528 0.88371 0.87501 0.90271 0.93873 0.89939 0.93610 0.90935 0.89246 0.94321 0.89510 0.88646 0.90936 0.88440 0.88682 0.91942 0.90395 0.88788 0.94107 0.89299 0.88912 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.32 29.02 0.42 -0.64 16 2 C -0.15 -0.91 9.33 -36.02 -0.34 -1.25 16 3 C 0.07 0.49 5.02 -4.98 -0.02 0.46 16 4 N -0.52 -3.92 5.15 -232.55 -1.20 -5.12 16 5 C 0.04 0.28 6.05 -2.19 -0.01 0.26 16 6 C -0.12 -0.80 5.55 -24.48 -0.14 -0.94 16 7 C 0.06 0.48 2.64 -65.88 -0.17 0.31 16 8 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 9 N -0.52 -4.62 4.46 -223.87 -1.00 -5.62 16 10 C 0.04 0.40 5.49 -3.70 -0.02 0.38 16 11 C 0.12 1.39 6.60 -3.60 -0.02 1.37 16 12 N -0.62 -8.51 3.00 -172.18 -0.52 -9.02 16 13 C 0.53 9.72 7.73 -10.98 -0.08 9.63 16 14 O -0.52 -11.33 15.31 5.56 0.09 -11.25 16 15 C -0.12 -2.36 4.52 36.01 0.16 -2.20 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 21 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 1.21 6.53 -3.37 -0.02 1.18 16 26 C 0.04 0.34 5.42 -3.47 -0.02 0.32 16 27 C 0.05 0.37 5.27 -2.83 -0.01 0.35 16 28 H 0.10 0.51 7.84 -52.48 -0.41 0.10 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.11 0.62 7.86 -52.49 -0.41 0.21 16 31 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.04 0.28 7.85 -51.93 -0.41 -0.13 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.28 7.62 -51.93 -0.40 -0.12 16 35 H 0.07 0.43 7.92 -51.93 -0.41 0.01 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.67 6.91 -51.93 -0.36 0.31 16 39 H 0.10 1.25 7.06 -51.93 -0.37 0.88 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.77 7.99 -51.92 -0.41 1.36 16 42 H 0.09 1.72 7.67 -51.92 -0.40 1.32 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.00 6.02 -51.93 -0.31 0.69 16 46 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16 48 H 0.09 0.77 7.50 -51.93 -0.39 0.38 16 49 H 0.05 0.37 7.56 -51.93 -0.39 -0.02 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -33.29 394.58 -11.06 -44.35 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.37 Total: -2.34 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -1.94 Total: -45.46 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.29 -11.06 -44.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716832545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.984 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds