Wall clock time and date at job start Tue Mar 31 2020 23:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00050 * 2 1 4 4 N 1.46899 * 109.47055 * 124.99820 * 3 2 1 5 5 C 1.47845 * 111.00141 * 69.16061 * 4 3 2 6 6 C 1.55109 * 104.90991 * 146.23962 * 5 4 3 7 7 C 1.55150 * 101.55808 * 323.15393 * 6 5 4 8 8 H 1.08996 * 110.70671 * 276.97104 * 7 6 5 9 9 N 1.46902 * 110.70520 * 153.90380 * 7 6 5 10 10 C 1.46898 * 110.99688 * 63.81246 * 9 7 6 11 11 C 1.53243 * 109.33841 * 187.25251 * 10 9 7 12 12 N 1.47079 * 108.52023 * 306.16783 * 11 10 9 13 13 C 1.34773 * 120.87963 * 231.18929 * 12 11 10 14 14 O 1.21283 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99721 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46942 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00017 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00294 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00153 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00093 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 90.00077 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00257 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00251 * 21 19 17 25 25 C 1.47082 * 118.23464 * 51.45710 * 12 11 10 26 26 C 1.46898 * 110.99909 * 188.10811 * 9 7 6 27 27 C 1.47449 * 111.00008 * 189.99623 * 4 3 2 28 28 H 1.08006 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00551 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99930 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47088 * 4.99600 * 3 2 1 32 32 H 1.09003 * 109.47020 * 245.00097 * 3 2 1 33 33 H 1.09006 * 110.37033 * 265.19196 * 5 4 3 34 34 H 1.09000 * 110.37572 * 27.52757 * 5 4 3 35 35 H 1.08999 * 111.14769 * 205.04890 * 6 5 4 36 36 H 1.09002 * 110.92688 * 81.15974 * 6 5 4 37 37 H 1.08999 * 109.49478 * 67.28723 * 10 9 7 38 38 H 1.09000 * 109.49127 * 307.20488 * 10 9 7 39 39 H 1.08998 * 109.62883 * 186.45852 * 11 10 9 40 40 H 1.08999 * 109.78638 * 65.97380 * 11 10 9 41 41 H 1.08997 * 109.46935 * 60.00104 * 15 13 12 42 42 H 1.09000 * 109.47082 * 299.99666 * 15 13 12 43 43 H 0.97006 * 119.99745 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.62853 * 68.25707 * 25 12 11 45 45 H 1.09004 * 109.62104 * 188.83615 * 25 12 11 46 46 H 1.08997 * 109.49231 * 292.71200 * 26 9 7 47 47 H 1.09005 * 109.49101 * 52.79037 * 26 9 7 48 48 H 1.08998 * 109.88787 * 117.33596 * 27 4 3 49 49 H 1.09001 * 110.02162 * 356.22928 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 4.0976 0.3654 0.9380 6 6 5.3344 1.0303 1.5969 7 6 5.1110 2.5238 1.2410 8 1 5.4751 2.7393 0.2365 9 7 5.7639 3.3959 2.2264 10 6 7.2215 3.2143 2.2060 11 6 7.8471 4.0003 3.3632 12 7 7.3931 5.3968 3.2787 13 6 8.2762 6.4144 3.3114 14 8 9.4628 6.1846 3.4121 15 6 7.7892 7.8378 3.2228 16 16 9.2037 8.9648 3.2922 17 6 8.3686 10.5117 3.1730 18 1 7.2922 10.5392 3.0884 19 6 9.0941 11.6950 3.1866 20 7 8.4702 12.8506 3.0971 21 14 10.9558 11.6475 3.3322 22 1 11.5569 11.5849 1.9757 23 1 11.3612 10.4485 4.1089 24 1 11.4294 12.8711 4.0275 25 6 5.9494 5.6534 3.1637 26 6 5.3991 4.8021 2.0085 27 6 3.5769 2.6760 1.3095 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.8660 -0.5791 1.4304 34 1 4.2773 0.2059 -0.1252 35 1 6.2607 0.6589 1.1587 36 1 5.3276 0.8811 2.6766 37 1 7.6205 3.5802 1.2600 38 1 7.4577 2.1559 2.3158 39 1 8.9337 3.9632 3.2859 40 1 7.5328 3.5700 4.3141 41 1 7.1180 8.0447 4.0563 42 1 7.2563 7.9816 2.2828 43 1 8.9773 13.6775 3.1070 44 1 5.4533 5.3780 4.0943 45 1 5.7810 6.7098 2.9543 46 1 5.8235 5.1459 1.0652 47 1 4.3136 4.8952 1.9748 48 1 3.2874 3.0816 2.2789 49 1 3.2339 3.3372 0.5137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716832545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:24 Heat of formation + Delta-G solvation = -12.374289 kcal Electronic energy + Delta-G solvation = -27013.538445 eV Core-core repulsion = 23294.678036 eV Total energy + Delta-G solvation = -3718.860410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37842 -40.34459 -38.54834 -36.06774 -34.68405 -34.56726 -32.74226 -31.64993 -30.52296 -29.68194 -27.89717 -27.29911 -25.79286 -24.71204 -22.82021 -22.06570 -21.30548 -20.47298 -20.39750 -19.55198 -18.37709 -17.26578 -17.19368 -17.10975 -16.90644 -16.71310 -16.20574 -15.95007 -15.72986 -15.44089 -15.11500 -14.95267 -14.73724 -14.61260 -14.57198 -14.15183 -13.78739 -13.51287 -13.36213 -13.32590 -13.25401 -13.02845 -12.91990 -12.68518 -12.66628 -12.34444 -12.12595 -12.01302 -11.87133 -11.81421 -11.80824 -11.60705 -11.18059 -10.95227 -10.53625 -10.38522 -9.90074 -9.39139 -9.22827 -9.01588 -8.52314 -6.23493 0.95774 1.30264 1.38766 1.44808 1.48695 1.52724 2.01832 2.24141 2.63935 2.72541 2.85900 3.14365 3.45679 3.49119 3.76875 3.87479 3.96252 4.00005 4.04472 4.14426 4.21058 4.24745 4.27620 4.32373 4.37308 4.38760 4.41317 4.46741 4.54662 4.65562 4.71475 4.75809 4.80775 4.82912 4.92223 4.98321 5.00806 5.03529 5.06062 5.22274 5.43543 5.70010 5.73557 5.85958 5.91882 5.98555 5.99787 6.10499 6.10683 6.24633 6.92862 7.04132 8.59902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.001981 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.247513 B =14133.043712 C =15012.480038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C 0.075 3.925 4 N -0.532 5.532 5 C 0.045 3.955 6 C -0.115 4.115 7 C 0.065 3.935 8 H 0.043 0.957 9 N -0.524 5.524 10 C 0.052 3.948 11 C 0.117 3.883 12 N -0.609 5.609 13 C 0.534 3.466 14 O -0.563 6.563 15 C -0.106 4.106 16 S -0.177 6.177 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.238 1.238 24 H -0.258 1.258 25 C 0.107 3.893 26 C 0.042 3.958 27 C 0.053 3.947 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.030 0.970 47 H 0.109 0.891 48 H 0.086 0.914 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 -29.178 -5.800 33.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C -0.053 4.053 4 N -0.257 5.257 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.044 4.044 8 H 0.061 0.939 9 N -0.249 5.249 10 C -0.077 4.077 11 C -0.005 4.005 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.442 6.442 15 C -0.256 4.256 16 S 0.050 5.950 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.162 1.162 24 H -0.182 1.182 25 C -0.015 4.015 26 C -0.086 4.086 27 C -0.075 4.075 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.127 0.873 48 H 0.104 0.896 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.080 -29.581 -4.762 32.693 hybrid contribution -0.050 1.473 -1.711 2.258 sum -13.130 -28.109 -6.473 31.692 Atomic orbital electron populations 1.23981 0.95787 1.02586 0.99853 1.22832 0.96172 0.97913 1.00530 1.21487 0.95393 0.96708 0.91671 1.63674 1.16171 1.05325 1.40504 1.23095 0.89285 0.96563 0.99355 1.22784 0.97960 0.92285 1.02306 1.22857 0.94719 0.93936 0.92914 0.93938 1.62053 1.07849 1.05678 1.49281 1.22415 0.87290 1.01514 0.96453 1.21761 0.99869 0.79184 0.99690 1.48165 1.07627 1.05918 1.72589 1.20026 0.85742 0.86622 0.75428 1.90670 1.17736 1.85077 1.50733 1.23267 1.01948 0.93511 1.06918 1.84728 1.13142 1.00202 1.96935 1.22440 0.95909 0.91403 1.57828 0.91836 1.25541 1.03353 0.94033 0.92952 1.70014 1.38225 0.98143 1.48929 0.85884 0.80063 0.80221 0.80304 1.18755 1.16174 1.18243 1.22186 0.78271 1.00811 1.00249 1.22598 1.02170 0.87602 0.96241 1.22840 0.91706 0.90499 1.02452 0.88275 0.87442 0.87150 0.90292 0.93776 0.89583 0.93154 0.89918 0.89795 0.95606 0.87364 0.90268 0.89446 0.86953 0.87214 0.91356 0.88737 0.88758 0.95154 0.87279 0.89608 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 14.32 67.79 0.97 -0.86 16 2 C -0.16 -1.73 9.33 25.65 0.24 -1.49 16 3 C 0.07 0.88 5.02 85.56 0.43 1.30 16 4 N -0.53 -7.04 5.15 -889.65 -4.59 -11.62 16 5 C 0.04 0.49 6.05 86.84 0.53 1.01 16 6 C -0.12 -1.26 5.55 32.05 0.18 -1.09 16 7 C 0.06 0.85 2.64 46.10 0.12 0.97 16 8 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 9 N -0.52 -8.01 4.46 -862.19 -3.84 -11.85 16 10 C 0.05 0.87 5.49 86.38 0.47 1.35 16 11 C 0.12 2.55 6.60 86.35 0.57 3.12 16 12 N -0.61 -15.79 3.00 -817.05 -2.45 -18.25 16 13 C 0.53 19.09 7.73 87.66 0.68 19.77 16 14 O -0.56 -24.59 15.31 -3.04 -0.05 -24.64 16 15 C -0.11 -4.05 4.52 71.24 0.32 -3.73 16 16 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 17 C -0.53 -30.73 10.04 67.95 0.68 -30.05 16 18 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 19 C 0.05 2.74 5.50 84.86 0.47 3.21 16 20 N -0.92 -55.55 13.97 21.65 0.30 -55.24 16 21 Si 0.91 45.08 27.74 68.60 1.90 46.98 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.11 2.05 6.53 86.50 0.57 2.62 16 26 C 0.04 0.68 5.42 86.54 0.47 1.15 16 27 C 0.05 0.68 5.27 86.64 0.46 1.14 16 28 H 0.10 0.91 7.84 -2.91 -0.02 0.89 16 29 H 0.11 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.11 1.11 7.86 -2.91 -0.02 1.09 16 31 H 0.08 0.90 7.68 -2.39 -0.02 0.88 16 32 H 0.04 0.50 7.85 -2.39 -0.02 0.48 16 33 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.51 7.62 -2.39 -0.02 0.49 16 35 H 0.08 0.75 7.92 -2.39 -0.02 0.73 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 1.39 6.91 -2.39 -0.02 1.37 16 39 H 0.08 2.03 7.06 -2.39 -0.02 2.01 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 3.97 7.99 -2.40 -0.02 3.95 16 42 H 0.11 3.88 7.67 -2.40 -0.02 3.86 16 43 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.82 6.02 -2.38 -0.01 1.80 16 46 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.11 1.34 6.56 -2.38 -0.02 1.33 16 48 H 0.09 1.24 7.50 -2.39 -0.02 1.22 16 49 H 0.06 0.69 7.56 -2.39 -0.02 0.68 16 Total: -1.00 -71.77 394.58 -1.75 -73.52 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.87 Total: 12.72 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 7.15 Total: -1.57 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -10.58 Total: -96.97 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -71.77 -1.75 -73.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716832545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.149 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds