Wall clock time and date at job start Tue Mar 31 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47434 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46888 * 55.00148 * 5 4 3 7 7 C 1.53003 * 109.47014 * 174.99394 * 5 4 3 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31614 * 120.00468 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99699 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00536 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00384 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00287 * 13 11 9 17 17 N 1.46491 * 109.46969 * 294.99999 * 5 4 3 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4 19 19 O 1.21684 * 120.00059 * 0.02562 * 18 17 5 20 20 C 1.46685 * 119.99701 * 179.97438 * 18 17 5 21 21 S 1.76215 * 126.13294 * 359.69365 * 20 18 17 22 22 C 1.70951 * 90.31295 * 179.97438 * 21 20 18 23 23 C 1.50709 * 124.80502 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.46793 * 270.33957 * 23 22 21 25 25 N 1.29427 * 110.39215 * 0.34741 * 22 21 20 26 26 C 1.30943 * 117.36586 * 359.72413 * 25 22 21 27 27 C 1.50693 * 122.90698 * 180.02562 * 26 25 22 28 28 H 1.08996 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46758 * 299.99717 * 1 2 3 30 30 H 1.09002 * 109.47072 * 59.99810 * 1 2 3 31 31 H 1.09004 * 109.47269 * 240.00349 * 2 1 3 32 32 H 1.08991 * 109.47771 * 119.99996 * 2 1 3 33 33 H 1.08997 * 109.47600 * 59.99990 * 3 2 1 34 34 H 1.09002 * 109.47306 * 300.00047 * 3 2 1 35 35 H 1.08995 * 109.47597 * 59.99813 * 4 3 2 36 36 H 1.09005 * 109.47041 * 299.99967 * 4 3 2 37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4 38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4 39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 40 40 H 0.97000 * 120.00663 * 179.97438 * 12 11 9 41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4 42 42 H 1.08998 * 109.46514 * 30.34247 * 23 22 21 43 43 H 1.08995 * 109.47078 * 150.34248 * 23 22 21 44 44 H 1.08992 * 109.47463 * 299.99713 * 24 23 22 45 45 H 1.09007 * 109.46676 * 60.00507 * 24 23 22 46 46 H 1.09001 * 109.46641 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47419 * 269.96294 * 27 26 25 48 48 H 1.09001 * 109.47221 * 29.95782 * 27 26 25 49 49 H 1.08999 * 109.47261 * 149.96294 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6457 3.4236 0.8423 7 6 5.6048 2.8868 0.1252 8 7 6.1030 4.2594 0.0060 9 6 7.4468 4.5095 0.0869 10 1 8.1395 3.6949 0.2389 11 6 7.9194 5.8093 -0.0317 12 7 9.2111 6.0496 0.0455 13 14 6.7219 7.2173 -0.3022 14 1 6.2896 7.7587 1.0113 15 1 7.3874 8.2897 -1.0847 16 1 5.5369 6.7229 -1.0482 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6979 4.0754 -0.4293 20 6 2.0862 4.7647 -2.6182 21 16 3.0808 4.9134 -4.0652 22 6 1.8211 5.7562 -4.8559 23 6 1.8904 6.2809 -6.2670 24 6 2.4499 7.7049 -6.2546 25 7 0.8018 5.8858 -4.0688 26 6 0.8995 5.3729 -2.8680 27 6 -0.2103 5.4509 -1.8516 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9289 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 6.0351 2.2741 -0.6669 38 1 5.8903 2.4796 1.0951 39 1 5.4808 4.9911 -0.1301 40 1 9.5413 6.9579 -0.0377 41 1 4.3111 3.5669 -1.9974 42 1 2.5414 5.6398 -6.8613 43 1 0.8910 6.2870 -6.7018 44 1 1.7990 8.3459 -5.6602 45 1 3.4495 7.6987 -5.8197 46 1 2.5005 8.0842 -7.2752 47 1 -0.0961 6.3577 -1.2577 48 1 -1.1719 5.4714 -2.3645 49 1 -0.1658 4.5802 -1.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717533268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:09 Heat of formation + Delta-G solvation = -7.597739 kcal Electronic energy + Delta-G solvation = -28007.742983 eV Core-core repulsion = 24289.089700 eV Total energy + Delta-G solvation = -3718.653283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52427 -39.47221 -36.71996 -35.06086 -34.49297 -33.69357 -31.69423 -31.01147 -30.64212 -28.40122 -27.36304 -25.68802 -24.22274 -22.53861 -22.10426 -21.91247 -20.79168 -20.47721 -19.55400 -18.06219 -17.75542 -16.70448 -16.33707 -15.60690 -15.42333 -14.86415 -14.80536 -14.56370 -14.30575 -14.11332 -13.88793 -13.59235 -13.48294 -13.21903 -13.00584 -12.86038 -12.77600 -12.56950 -12.25788 -12.12570 -12.10232 -11.95753 -11.49877 -11.48225 -11.41075 -11.38937 -11.04892 -10.94453 -10.90720 -10.41041 -10.37037 -10.16492 -10.03943 -9.69283 -9.66110 -9.58776 -9.00014 -8.92744 -8.76008 -7.32149 -5.83199 -3.19566 0.14242 1.05665 1.47446 2.34918 3.17069 3.23864 3.32103 3.36998 3.41420 3.77095 4.53391 4.55624 4.68580 4.80136 4.82953 4.86343 4.99839 5.01888 5.12140 5.24282 5.27212 5.33585 5.41048 5.46931 5.47982 5.57562 5.62593 5.67221 5.70474 5.72720 5.79858 5.82715 5.85235 5.88052 5.94810 6.03414 6.09046 6.17121 6.22668 6.32880 6.38685 6.50610 6.57169 6.74939 7.45618 7.59939 7.91672 8.22772 8.35410 9.13718 9.86128 10.05156 11.34911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006634 B = 0.005449 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4219.702120 B = 5137.465355 C = 8415.548342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.135 3.865 6 H 0.091 0.909 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.247 4.247 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.879 3.121 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.279 1.279 17 N -0.708 5.708 18 C 0.597 3.403 19 O -0.522 6.522 20 C -0.298 4.298 21 S 0.169 5.831 22 C 0.060 3.940 23 C -0.049 4.049 24 C -0.149 4.149 25 N -0.478 5.478 26 C 0.146 3.854 27 C -0.087 4.087 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.401 0.599 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 -6.105 -10.671 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.166 4.166 5 C 0.030 3.970 6 H 0.109 0.891 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.110 0.890 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.710 3.290 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.205 1.205 17 N -0.359 5.359 18 C 0.382 3.618 19 O -0.401 6.401 20 C -0.422 4.422 21 S 0.427 5.573 22 C -0.215 4.215 23 C -0.090 4.090 24 C -0.208 4.208 25 N -0.193 5.193 26 C 0.008 3.992 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.236 0.764 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.927 -6.228 -10.480 21.679 hybrid contribution -0.933 1.273 -0.024 1.578 sum -18.859 -4.955 -10.504 22.149 Atomic orbital electron populations 1.21741 0.96220 1.00912 1.01826 1.21563 0.95654 0.97597 1.01439 1.21679 0.94669 0.95548 1.03162 1.21976 0.96197 0.95830 1.02559 1.21450 0.96280 0.92919 0.86307 0.89051 1.20961 0.88822 0.88355 0.99782 1.42706 1.05418 1.02544 1.89476 1.19038 0.81960 0.94292 1.42369 0.89046 1.24631 0.95431 0.96850 1.01752 1.69688 1.11360 1.20034 1.56790 0.86638 0.80812 0.83426 0.78172 1.20997 1.21580 1.20482 1.45956 1.15363 1.57008 1.17546 1.16593 0.82242 0.77767 0.85184 1.90767 1.51044 1.59815 1.38496 1.25552 1.00097 1.15713 1.00818 1.84105 1.18234 1.50301 1.04621 1.27424 0.92433 1.00151 1.01508 1.20305 1.04043 0.97449 0.87204 1.21801 1.01578 0.94581 1.02848 1.66066 1.28258 1.21465 1.03543 1.20638 0.94473 0.92472 0.91629 1.20643 0.93625 1.04909 0.95460 0.93271 0.92760 0.93025 0.92600 0.92314 0.91386 0.91917 0.91763 0.90711 0.94911 0.93718 0.80471 0.92978 0.76430 0.89282 0.88503 0.91832 0.92041 0.91092 0.90219 0.91019 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.11 -1.42 3.81 -26.73 -0.10 -1.53 16 4 C -0.13 -1.59 4.89 -26.73 -0.13 -1.72 16 5 C 0.13 2.07 2.41 -67.93 -0.16 1.91 16 6 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 7 C 0.15 2.69 5.82 -4.04 -0.02 2.67 16 8 N -0.76 -17.41 5.24 -59.91 -0.31 -17.72 16 9 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 10 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 11 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 12 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 13 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 14 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 17 N -0.71 -10.91 4.47 -55.12 -0.25 -11.16 16 18 C 0.60 9.47 6.34 -12.85 -0.08 9.39 16 19 O -0.52 -8.84 11.40 5.20 0.06 -8.78 16 20 C -0.30 -4.41 6.48 -37.09 -0.24 -4.65 16 21 S 0.17 2.12 22.31 -107.50 -2.40 -0.28 16 22 C 0.06 0.71 6.64 -13.29 -0.09 0.62 16 23 C -0.05 -0.40 6.51 -27.88 -0.18 -0.58 16 24 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 25 N -0.48 -6.56 10.50 -7.70 -0.08 -6.64 16 26 C 0.15 2.09 6.79 -83.89 -0.57 1.52 16 27 C -0.09 -1.10 9.69 36.00 0.35 -0.75 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 34 H 0.06 0.88 5.65 -51.93 -0.29 0.59 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.36 8.44 5.20 -40.82 -0.21 8.22 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.40 6.05 7.79 -40.82 -0.32 5.74 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 1.35 6.01 -51.93 -0.31 1.04 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -32.13 404.16 -10.03 -42.16 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.29 Total: 10.27 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.91 Total: -3.36 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.13 Total: -63.62 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.13 -10.03 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717533268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.558 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds