Wall clock time and date at job start Tue Mar 31 2020 23:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47115 * 2 1
4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.47434 * 180.02562 * 4 3 2
6 6 H 1.08999 * 109.46888 * 55.00148 * 5 4 3
7 7 C 1.53003 * 109.47014 * 174.99394 * 5 4 3
8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4
9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5
10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7
11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7
12 12 N 1.31614 * 120.00468 * 180.02562 * 11 9 8
13 13 Si 1.86801 * 119.99699 * 359.97438 * 11 9 8
14 14 H 1.48504 * 109.47209 * 90.00536 * 13 11 9
15 15 H 1.48506 * 109.47294 * 210.00384 * 13 11 9
16 16 H 1.48501 * 109.47275 * 330.00287 * 13 11 9
17 17 N 1.46491 * 109.46969 * 294.99999 * 5 4 3
18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4
19 19 O 1.21684 * 120.00059 * 0.02562 * 18 17 5
20 20 C 1.46685 * 119.99701 * 179.97438 * 18 17 5
21 21 S 1.76215 * 126.13294 * 359.69365 * 20 18 17
22 22 C 1.70951 * 90.31295 * 179.97438 * 21 20 18
23 23 C 1.50709 * 124.80502 * 180.02562 * 22 21 20
24 24 C 1.52999 * 109.46793 * 270.33957 * 23 22 21
25 25 N 1.29427 * 110.39215 * 0.34741 * 22 21 20
26 26 C 1.30943 * 117.36586 * 359.72413 * 25 22 21
27 27 C 1.50693 * 122.90698 * 180.02562 * 26 25 22
28 28 H 1.08996 * 109.46832 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.46758 * 299.99717 * 1 2 3
30 30 H 1.09002 * 109.47072 * 59.99810 * 1 2 3
31 31 H 1.09004 * 109.47269 * 240.00349 * 2 1 3
32 32 H 1.08991 * 109.47771 * 119.99996 * 2 1 3
33 33 H 1.08997 * 109.47600 * 59.99990 * 3 2 1
34 34 H 1.09002 * 109.47306 * 300.00047 * 3 2 1
35 35 H 1.08995 * 109.47597 * 59.99813 * 4 3 2
36 36 H 1.09005 * 109.47041 * 299.99967 * 4 3 2
37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4
38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4
39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5
40 40 H 0.97000 * 120.00663 * 179.97438 * 12 11 9
41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4
42 42 H 1.08998 * 109.46514 * 30.34247 * 23 22 21
43 43 H 1.08995 * 109.47078 * 150.34248 * 23 22 21
44 44 H 1.08992 * 109.47463 * 299.99713 * 24 23 22
45 45 H 1.09007 * 109.46676 * 60.00507 * 24 23 22
46 46 H 1.09001 * 109.46641 * 179.97438 * 24 23 22
47 47 H 1.08997 * 109.47419 * 269.96294 * 27 26 25
48 48 H 1.09001 * 109.47221 * 29.95782 * 27 26 25
49 49 H 1.08999 * 109.47261 * 149.96294 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 -0.0006
5 6 4.0800 2.8851 0.0000
6 1 3.6457 3.4236 0.8423
7 6 5.6048 2.8868 0.1252
8 7 6.1030 4.2594 0.0060
9 6 7.4468 4.5095 0.0869
10 1 8.1395 3.6949 0.2389
11 6 7.9194 5.8093 -0.0317
12 7 9.2111 6.0496 0.0455
13 14 6.7219 7.2173 -0.3022
14 1 6.2896 7.7587 1.0113
15 1 7.3874 8.2897 -1.0847
16 1 5.5369 6.7229 -1.0482
17 7 3.6919 3.5408 -1.2512
18 6 2.4745 4.1077 -1.3655
19 8 1.6979 4.0754 -0.4293
20 6 2.0862 4.7647 -2.6182
21 16 3.0808 4.9134 -4.0652
22 6 1.8211 5.7562 -4.8559
23 6 1.8904 6.2809 -6.2670
24 6 2.4499 7.7049 -6.2546
25 7 0.8018 5.8858 -4.0688
26 6 0.8995 5.3729 -2.8680
27 6 -0.2103 5.4509 -1.8516
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.6767 1.9564 0.8899
34 1 1.6767 1.9564 -0.8900
35 1 3.9330 0.9289 -0.8908
36 1 3.9337 0.9286 0.8892
37 1 6.0351 2.2741 -0.6669
38 1 5.8903 2.4796 1.0951
39 1 5.4808 4.9911 -0.1301
40 1 9.5413 6.9579 -0.0377
41 1 4.3111 3.5669 -1.9974
42 1 2.5414 5.6398 -6.8613
43 1 0.8910 6.2870 -6.7018
44 1 1.7990 8.3459 -5.6602
45 1 3.4495 7.6987 -5.8197
46 1 2.5005 8.0842 -7.2752
47 1 -0.0961 6.3577 -1.2577
48 1 -1.1719 5.4714 -2.3645
49 1 -0.1658 4.5802 -1.1975
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717533268.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:18:09
Heat of formation + Delta-G solvation = -7.597739 kcal
Electronic energy + Delta-G solvation = -28007.742983 eV
Core-core repulsion = 24289.089700 eV
Total energy + Delta-G solvation = -3718.653283 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.52427 -39.47221 -36.71996 -35.06086 -34.49297 -33.69357 -31.69423 -31.01147
-30.64212 -28.40122 -27.36304 -25.68802 -24.22274 -22.53861 -22.10426 -21.91247
-20.79168 -20.47721 -19.55400 -18.06219 -17.75542 -16.70448 -16.33707 -15.60690
-15.42333 -14.86415 -14.80536 -14.56370 -14.30575 -14.11332 -13.88793 -13.59235
-13.48294 -13.21903 -13.00584 -12.86038 -12.77600 -12.56950 -12.25788 -12.12570
-12.10232 -11.95753 -11.49877 -11.48225 -11.41075 -11.38937 -11.04892 -10.94453
-10.90720 -10.41041 -10.37037 -10.16492 -10.03943 -9.69283 -9.66110 -9.58776
-9.00014 -8.92744 -8.76008 -7.32149 -5.83199 -3.19566 0.14242 1.05665
1.47446 2.34918 3.17069 3.23864 3.32103 3.36998 3.41420 3.77095
4.53391 4.55624 4.68580 4.80136 4.82953 4.86343 4.99839 5.01888
5.12140 5.24282 5.27212 5.33585 5.41048 5.46931 5.47982 5.57562
5.62593 5.67221 5.70474 5.72720 5.79858 5.82715 5.85235 5.88052
5.94810 6.03414 6.09046 6.17121 6.22668 6.32880 6.38685 6.50610
6.57169 6.74939 7.45618 7.59939 7.91672 8.22772 8.35410 9.13718
9.86128 10.05156 11.34911
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.006634 B = 0.005449 C = 0.003326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4219.702120 B = 5137.465355 C = 8415.548342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.125 4.125
3 C -0.113 4.113
4 C -0.127 4.127
5 C 0.135 3.865
6 H 0.091 0.909
7 C 0.148 3.852
8 N -0.755 5.755
9 C -0.247 4.247
10 H 0.092 0.908
11 C 0.009 3.991
12 N -0.931 5.931
13 Si 0.879 3.121
14 H -0.283 1.283
15 H -0.289 1.289
16 H -0.279 1.279
17 N -0.708 5.708
18 C 0.597 3.403
19 O -0.522 6.522
20 C -0.298 4.298
21 S 0.169 5.831
22 C 0.060 3.940
23 C -0.049 4.049
24 C -0.149 4.149
25 N -0.478 5.478
26 C 0.146 3.854
27 C -0.087 4.087
28 H 0.048 0.952
29 H 0.053 0.947
30 H 0.051 0.949
31 H 0.055 0.945
32 H 0.058 0.942
33 H 0.067 0.933
34 H 0.062 0.938
35 H 0.064 0.936
36 H 0.074 0.926
37 H 0.033 0.967
38 H 0.045 0.955
39 H 0.362 0.638
40 H 0.260 0.740
41 H 0.401 0.599
42 H 0.089 0.911
43 H 0.097 0.903
44 H 0.063 0.937
45 H 0.060 0.940
46 H 0.070 0.930
47 H 0.079 0.921
48 H 0.071 0.929
49 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.255 -6.105 -10.671 22.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.163 4.163
3 C -0.151 4.151
4 C -0.166 4.166
5 C 0.030 3.970
6 H 0.109 0.891
7 C 0.021 3.979
8 N -0.401 5.401
9 C -0.377 4.377
10 H 0.110 0.890
11 C -0.187 4.187
12 N -0.579 5.579
13 Si 0.710 3.290
14 H -0.210 1.210
15 H -0.216 1.216
16 H -0.205 1.205
17 N -0.359 5.359
18 C 0.382 3.618
19 O -0.401 6.401
20 C -0.422 4.422
21 S 0.427 5.573
22 C -0.215 4.215
23 C -0.090 4.090
24 C -0.208 4.208
25 N -0.193 5.193
26 C 0.008 3.992
27 C -0.146 4.146
28 H 0.067 0.933
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.086 0.914
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.093 0.907
37 H 0.051 0.949
38 H 0.063 0.937
39 H 0.195 0.805
40 H 0.070 0.930
41 H 0.236 0.764
42 H 0.107 0.893
43 H 0.115 0.885
44 H 0.082 0.918
45 H 0.080 0.920
46 H 0.089 0.911
47 H 0.098 0.902
48 H 0.090 0.910
49 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -17.927 -6.228 -10.480 21.679
hybrid contribution -0.933 1.273 -0.024 1.578
sum -18.859 -4.955 -10.504 22.149
Atomic orbital electron populations
1.21741 0.96220 1.00912 1.01826 1.21563 0.95654 0.97597 1.01439
1.21679 0.94669 0.95548 1.03162 1.21976 0.96197 0.95830 1.02559
1.21450 0.96280 0.92919 0.86307 0.89051 1.20961 0.88822 0.88355
0.99782 1.42706 1.05418 1.02544 1.89476 1.19038 0.81960 0.94292
1.42369 0.89046 1.24631 0.95431 0.96850 1.01752 1.69688 1.11360
1.20034 1.56790 0.86638 0.80812 0.83426 0.78172 1.20997 1.21580
1.20482 1.45956 1.15363 1.57008 1.17546 1.16593 0.82242 0.77767
0.85184 1.90767 1.51044 1.59815 1.38496 1.25552 1.00097 1.15713
1.00818 1.84105 1.18234 1.50301 1.04621 1.27424 0.92433 1.00151
1.01508 1.20305 1.04043 0.97449 0.87204 1.21801 1.01578 0.94581
1.02848 1.66066 1.28258 1.21465 1.03543 1.20638 0.94473 0.92472
0.91629 1.20643 0.93625 1.04909 0.95460 0.93271 0.92760 0.93025
0.92600 0.92314 0.91386 0.91917 0.91763 0.90711 0.94911 0.93718
0.80471 0.92978 0.76430 0.89282 0.88503 0.91832 0.92041 0.91092
0.90219 0.91019 0.88039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.49 9.91 37.16 0.37 -1.13 16
2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16
3 C -0.11 -1.42 3.81 -26.73 -0.10 -1.53 16
4 C -0.13 -1.59 4.89 -26.73 -0.13 -1.72 16
5 C 0.13 2.07 2.41 -67.93 -0.16 1.91 16
6 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16
7 C 0.15 2.69 5.82 -4.04 -0.02 2.67 16
8 N -0.76 -17.41 5.24 -59.91 -0.31 -17.72 16
9 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16
10 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16
11 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16
12 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16
13 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16
14 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16
15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
16 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16
17 N -0.71 -10.91 4.47 -55.12 -0.25 -11.16 16
18 C 0.60 9.47 6.34 -12.85 -0.08 9.39 16
19 O -0.52 -8.84 11.40 5.20 0.06 -8.78 16
20 C -0.30 -4.41 6.48 -37.09 -0.24 -4.65 16
21 S 0.17 2.12 22.31 -107.50 -2.40 -0.28 16
22 C 0.06 0.71 6.64 -13.29 -0.09 0.62 16
23 C -0.05 -0.40 6.51 -27.88 -0.18 -0.58 16
24 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16
25 N -0.48 -6.56 10.50 -7.70 -0.08 -6.64 16
26 C 0.15 2.09 6.79 -83.89 -0.57 1.52 16
27 C -0.09 -1.10 9.69 36.00 0.35 -0.75 16
28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16
34 H 0.06 0.88 5.65 -51.93 -0.29 0.59 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.36 8.44 5.20 -40.82 -0.21 8.22 16
40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
41 H 0.40 6.05 7.79 -40.82 -0.32 5.74 16
42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
49 H 0.10 1.35 6.01 -51.93 -0.31 1.04 16
LS Contribution 404.16 15.07 6.09 6.09
Total: -1.00 -32.13 404.16 -10.03 -42.16
By element:
Atomic # 1 Polarization: 18.56 SS G_CDS: -8.29 Total: 10.27 kcal
Atomic # 6 Polarization: -2.45 SS G_CDS: -0.91 Total: -3.36 kcal
Atomic # 7 Polarization: -63.75 SS G_CDS: 0.13 Total: -63.62 kcal
Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal
Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -32.13 -10.03 -42.16 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717533268.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.558 kcal
(2) G-P(sol) polarization free energy of solvation -32.127 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds