Wall clock time and date at job start Tue Mar 31 2020 23:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47115 * 2 1
4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.47434 * 180.02562 * 4 3 2
6 6 H 1.08999 * 109.46888 * 55.00148 * 5 4 3
7 7 C 1.53003 * 109.47014 * 174.99394 * 5 4 3
8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4
9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5
10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7
11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7
12 12 N 1.31614 * 120.00468 * 180.02562 * 11 9 8
13 13 Si 1.86801 * 119.99699 * 359.97438 * 11 9 8
14 14 H 1.48504 * 109.47209 * 90.00536 * 13 11 9
15 15 H 1.48506 * 109.47294 * 210.00384 * 13 11 9
16 16 H 1.48501 * 109.47275 * 330.00287 * 13 11 9
17 17 N 1.46491 * 109.46969 * 294.99999 * 5 4 3
18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4
19 19 O 1.21684 * 120.00059 * 0.02562 * 18 17 5
20 20 C 1.46685 * 119.99701 * 179.97438 * 18 17 5
21 21 S 1.76215 * 126.13294 * 359.69365 * 20 18 17
22 22 C 1.70951 * 90.31295 * 179.97438 * 21 20 18
23 23 C 1.50709 * 124.80502 * 180.02562 * 22 21 20
24 24 C 1.52999 * 109.46793 * 270.33957 * 23 22 21
25 25 N 1.29427 * 110.39215 * 0.34741 * 22 21 20
26 26 C 1.30943 * 117.36586 * 359.72413 * 25 22 21
27 27 C 1.50693 * 122.90698 * 180.02562 * 26 25 22
28 28 H 1.08996 * 109.46832 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.46758 * 299.99717 * 1 2 3
30 30 H 1.09002 * 109.47072 * 59.99810 * 1 2 3
31 31 H 1.09004 * 109.47269 * 240.00349 * 2 1 3
32 32 H 1.08991 * 109.47771 * 119.99996 * 2 1 3
33 33 H 1.08997 * 109.47600 * 59.99990 * 3 2 1
34 34 H 1.09002 * 109.47306 * 300.00047 * 3 2 1
35 35 H 1.08995 * 109.47597 * 59.99813 * 4 3 2
36 36 H 1.09005 * 109.47041 * 299.99967 * 4 3 2
37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4
38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4
39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5
40 40 H 0.97000 * 120.00663 * 179.97438 * 12 11 9
41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4
42 42 H 1.08998 * 109.46514 * 30.34247 * 23 22 21
43 43 H 1.08995 * 109.47078 * 150.34248 * 23 22 21
44 44 H 1.08992 * 109.47463 * 299.99713 * 24 23 22
45 45 H 1.09007 * 109.46676 * 60.00507 * 24 23 22
46 46 H 1.09001 * 109.46641 * 179.97438 * 24 23 22
47 47 H 1.08997 * 109.47419 * 269.96294 * 27 26 25
48 48 H 1.09001 * 109.47221 * 29.95782 * 27 26 25
49 49 H 1.08999 * 109.47261 * 149.96294 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 -0.0006
5 6 4.0800 2.8851 0.0000
6 1 3.6457 3.4236 0.8423
7 6 5.6048 2.8868 0.1252
8 7 6.1030 4.2594 0.0060
9 6 7.4468 4.5095 0.0869
10 1 8.1395 3.6949 0.2389
11 6 7.9194 5.8093 -0.0317
12 7 9.2111 6.0496 0.0455
13 14 6.7219 7.2173 -0.3022
14 1 6.2896 7.7587 1.0113
15 1 7.3874 8.2897 -1.0847
16 1 5.5369 6.7229 -1.0482
17 7 3.6919 3.5408 -1.2512
18 6 2.4745 4.1077 -1.3655
19 8 1.6979 4.0754 -0.4293
20 6 2.0862 4.7647 -2.6182
21 16 3.0808 4.9134 -4.0652
22 6 1.8211 5.7562 -4.8559
23 6 1.8904 6.2809 -6.2670
24 6 2.4499 7.7049 -6.2546
25 7 0.8018 5.8858 -4.0688
26 6 0.8995 5.3729 -2.8680
27 6 -0.2103 5.4509 -1.8516
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.6767 1.9564 0.8899
34 1 1.6767 1.9564 -0.8900
35 1 3.9330 0.9289 -0.8908
36 1 3.9337 0.9286 0.8892
37 1 6.0351 2.2741 -0.6669
38 1 5.8903 2.4796 1.0951
39 1 5.4808 4.9911 -0.1301
40 1 9.5413 6.9579 -0.0377
41 1 4.3111 3.5669 -1.9974
42 1 2.5414 5.6398 -6.8613
43 1 0.8910 6.2870 -6.7018
44 1 1.7990 8.3459 -5.6602
45 1 3.4495 7.6987 -5.8197
46 1 2.5005 8.0842 -7.2752
47 1 -0.0961 6.3577 -1.2577
48 1 -1.1719 5.4714 -2.3645
49 1 -0.1658 4.5802 -1.1975
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717533268.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:18:09
Heat of formation + Delta-G solvation = -27.531828 kcal
Electronic energy + Delta-G solvation = -28008.607390 eV
Core-core repulsion = 24289.089700 eV
Total energy + Delta-G solvation = -3719.517690 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.62309 -40.59603 -38.02969 -36.36763 -35.27786 -35.21355 -33.42435 -32.24430
-31.74517 -29.49090 -28.73939 -26.50551 -25.74450 -23.62900 -23.55122 -22.90015
-21.83224 -21.73491 -20.70769 -19.71018 -19.06040 -17.88224 -17.48683 -16.85458
-16.54709 -16.33451 -15.98568 -15.70179 -15.55185 -15.27545 -14.91917 -14.80753
-14.56432 -14.47738 -14.41192 -14.01648 -13.91106 -13.76704 -13.47463 -13.31812
-13.00466 -12.98948 -12.93811 -12.65262 -12.60981 -12.42531 -12.17303 -12.13186
-11.98963 -11.90004 -11.85883 -11.48002 -11.37281 -11.13684 -11.05335 -10.77134
-10.62289 -10.11342 -9.80708 -9.34970 -8.06269 -5.39112 -0.87452 0.07522
0.47192 1.29809 1.30246 1.33611 1.38898 1.99351 2.06710 2.41769
2.89037 3.26355 3.40965 3.69858 3.74028 3.84365 3.98815 4.06189
4.13104 4.17781 4.23070 4.27953 4.30922 4.50467 4.51882 4.57972
4.65208 4.74476 4.80441 4.82022 4.88880 4.92379 4.93366 4.97757
5.00215 5.05417 5.12206 5.18506 5.23668 5.28475 5.33022 5.38036
5.52404 5.58639 5.73642 6.17513 6.32210 6.51518 7.02236 7.03693
7.78750 7.96354 9.15100
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.006634 B = 0.005449 C = 0.003326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4219.702120 B = 5137.465355 C = 8415.548342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.121 4.121
3 C -0.105 4.105
4 C -0.119 4.119
5 C 0.145 3.855
6 H 0.075 0.925
7 C 0.147 3.853
8 N -0.758 5.758
9 C -0.229 4.229
10 H 0.066 0.934
11 C -0.052 4.052
12 N -0.978 5.978
13 Si 0.940 3.060
14 H -0.286 1.286
15 H -0.291 1.291
16 H -0.261 1.261
17 N -0.709 5.709
18 C 0.596 3.404
19 O -0.539 6.539
20 C -0.329 4.329
21 S 0.180 5.820
22 C 0.072 3.928
23 C -0.051 4.051
24 C -0.148 4.148
25 N -0.497 5.497
26 C 0.142 3.858
27 C -0.084 4.084
28 H 0.064 0.936
29 H 0.049 0.951
30 H 0.044 0.956
31 H 0.062 0.938
32 H 0.068 0.932
33 H 0.051 0.949
34 H 0.046 0.954
35 H 0.075 0.925
36 H 0.089 0.911
37 H 0.044 0.956
38 H 0.050 0.950
39 H 0.362 0.638
40 H 0.258 0.742
41 H 0.402 0.598
42 H 0.113 0.887
43 H 0.110 0.890
44 H 0.049 0.951
45 H 0.052 0.948
46 H 0.095 0.905
47 H 0.079 0.921
48 H 0.087 0.913
49 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.881 -6.626 -12.250 24.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.159 4.159
3 C -0.143 4.143
4 C -0.158 4.158
5 C 0.040 3.960
6 H 0.093 0.907
7 C 0.021 3.979
8 N -0.404 5.404
9 C -0.360 4.360
10 H 0.084 0.916
11 C -0.244 4.244
12 N -0.628 5.628
13 Si 0.768 3.232
14 H -0.213 1.213
15 H -0.217 1.217
16 H -0.186 1.186
17 N -0.360 5.360
18 C 0.382 3.618
19 O -0.419 6.419
20 C -0.453 4.453
21 S 0.439 5.561
22 C -0.203 4.203
23 C -0.091 4.091
24 C -0.207 4.207
25 N -0.212 5.212
26 C 0.004 3.996
27 C -0.143 4.143
28 H 0.083 0.917
29 H 0.068 0.932
30 H 0.063 0.937
31 H 0.081 0.919
32 H 0.086 0.914
33 H 0.070 0.930
34 H 0.065 0.935
35 H 0.094 0.906
36 H 0.107 0.893
37 H 0.062 0.938
38 H 0.068 0.932
39 H 0.195 0.805
40 H 0.067 0.933
41 H 0.237 0.763
42 H 0.132 0.868
43 H 0.129 0.871
44 H 0.069 0.931
45 H 0.071 0.929
46 H 0.114 0.886
47 H 0.098 0.902
48 H 0.105 0.895
49 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -19.588 -6.792 -12.066 23.987
hybrid contribution -0.433 1.368 0.426 1.497
sum -20.020 -5.423 -11.640 23.785
Atomic orbital electron populations
1.21732 0.95824 1.01761 1.01305 1.21537 0.96016 0.96117 1.02227
1.21559 0.94493 0.96660 1.01575 1.21929 0.96158 0.93869 1.03796
1.21301 0.94075 0.94611 0.85967 0.90651 1.21136 0.90704 0.85853
1.00233 1.42721 1.03679 1.04672 1.89302 1.19046 0.83575 0.93444
1.39934 0.91558 1.25296 0.96841 0.99405 1.02866 1.69838 1.13386
1.20412 1.59208 0.85645 0.79277 0.80301 0.77931 1.21321 1.21711
1.18561 1.45939 1.15419 1.57179 1.17437 1.16735 0.82033 0.77514
0.85483 1.90753 1.51446 1.60470 1.39280 1.25503 1.01120 1.17216
1.01426 1.83999 1.18093 1.50405 1.03619 1.28154 0.91408 0.98270
1.02476 1.20570 1.05545 0.97849 0.85184 1.21807 1.00594 0.94131
1.04121 1.66147 1.29102 1.22405 1.03584 1.20916 0.94626 0.91936
0.92149 1.20618 0.94099 1.04351 0.95211 0.91719 0.93175 0.93700
0.91898 0.91352 0.93011 0.93506 0.90620 0.89290 0.93778 0.93240
0.80482 0.93278 0.76253 0.86836 0.87134 0.93143 0.92933 0.88605
0.90236 0.89453 0.89020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16
2 C -0.12 -2.36 5.93 30.59 0.18 -2.17 16
3 C -0.11 -2.54 3.81 30.59 0.12 -2.43 16
4 C -0.12 -2.79 4.89 30.59 0.15 -2.64 16
5 C 0.14 4.31 2.41 44.99 0.11 4.42 16
6 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16
7 C 0.15 5.16 5.82 86.38 0.50 5.66 16
8 N -0.76 -34.33 5.24 -343.46 -1.80 -36.12 16
9 C -0.23 -12.69 10.47 84.03 0.88 -11.81 16
10 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16
11 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16
12 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16
13 Si 0.94 46.02 27.73 68.60 1.90 47.92 16
14 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16
15 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16
16 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16
17 N -0.71 -21.26 4.47 -446.52 -1.99 -23.25 16
18 C 0.60 18.67 6.34 86.45 0.55 19.22 16
19 O -0.54 -18.31 11.40 -4.30 -0.05 -18.36 16
20 C -0.33 -9.50 6.48 23.88 0.15 -9.35 16
21 S 0.18 4.25 22.31 -56.49 -1.26 2.99 16
22 C 0.07 1.56 6.64 88.47 0.59 2.15 16
23 C -0.05 -0.69 6.51 29.85 0.19 -0.49 16
24 C -0.15 -1.98 9.89 71.98 0.71 -1.27 16
25 N -0.50 -12.93 10.50 -178.28 -1.87 -14.80 16
26 C 0.14 3.98 6.79 42.09 0.29 4.26 16
27 C -0.08 -2.08 9.69 71.23 0.69 -1.39 16
28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16
32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.05 1.41 7.84 -2.39 -0.02 1.40 16
34 H 0.05 1.29 5.65 -2.39 -0.01 1.27 16
35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16
37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.36 16.44 5.20 -92.70 -0.48 15.96 16
40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16
41 H 0.40 11.72 7.79 -92.70 -0.72 11.00 16
42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16
44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
45 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16
46 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16
47 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
49 H 0.09 2.46 6.01 -2.39 -0.01 2.44 16
Total: -1.00 -69.30 404.16 1.21 -68.09
By element:
Atomic # 1 Polarization: 35.65 SS G_CDS: -0.31 Total: 35.34 kcal
Atomic # 6 Polarization: -6.72 SS G_CDS: 6.29 Total: -0.43 kcal
Atomic # 7 Polarization: -130.18 SS G_CDS: -5.36 Total: -135.54 kcal
Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal
Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal
Atomic # 16 Polarization: 4.25 SS G_CDS: -1.26 Total: 2.99 kcal
Total: -69.30 1.21 -68.09 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717533268.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.554 kcal
(2) G-P(sol) polarization free energy of solvation -69.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.745 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds