Wall clock time and date at job start Tue Mar 31 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47434 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46888 * 55.00148 * 5 4 3 7 7 C 1.53003 * 109.47014 * 174.99394 * 5 4 3 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31614 * 120.00468 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99699 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00536 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00384 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00287 * 13 11 9 17 17 N 1.46491 * 109.46969 * 294.99999 * 5 4 3 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4 19 19 O 1.21684 * 120.00059 * 0.02562 * 18 17 5 20 20 C 1.46685 * 119.99701 * 179.97438 * 18 17 5 21 21 S 1.76215 * 126.13294 * 359.69365 * 20 18 17 22 22 C 1.70951 * 90.31295 * 179.97438 * 21 20 18 23 23 C 1.50709 * 124.80502 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.46793 * 270.33957 * 23 22 21 25 25 N 1.29427 * 110.39215 * 0.34741 * 22 21 20 26 26 C 1.30943 * 117.36586 * 359.72413 * 25 22 21 27 27 C 1.50693 * 122.90698 * 180.02562 * 26 25 22 28 28 H 1.08996 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46758 * 299.99717 * 1 2 3 30 30 H 1.09002 * 109.47072 * 59.99810 * 1 2 3 31 31 H 1.09004 * 109.47269 * 240.00349 * 2 1 3 32 32 H 1.08991 * 109.47771 * 119.99996 * 2 1 3 33 33 H 1.08997 * 109.47600 * 59.99990 * 3 2 1 34 34 H 1.09002 * 109.47306 * 300.00047 * 3 2 1 35 35 H 1.08995 * 109.47597 * 59.99813 * 4 3 2 36 36 H 1.09005 * 109.47041 * 299.99967 * 4 3 2 37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4 38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4 39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 40 40 H 0.97000 * 120.00663 * 179.97438 * 12 11 9 41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4 42 42 H 1.08998 * 109.46514 * 30.34247 * 23 22 21 43 43 H 1.08995 * 109.47078 * 150.34248 * 23 22 21 44 44 H 1.08992 * 109.47463 * 299.99713 * 24 23 22 45 45 H 1.09007 * 109.46676 * 60.00507 * 24 23 22 46 46 H 1.09001 * 109.46641 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47419 * 269.96294 * 27 26 25 48 48 H 1.09001 * 109.47221 * 29.95782 * 27 26 25 49 49 H 1.08999 * 109.47261 * 149.96294 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6457 3.4236 0.8423 7 6 5.6048 2.8868 0.1252 8 7 6.1030 4.2594 0.0060 9 6 7.4468 4.5095 0.0869 10 1 8.1395 3.6949 0.2389 11 6 7.9194 5.8093 -0.0317 12 7 9.2111 6.0496 0.0455 13 14 6.7219 7.2173 -0.3022 14 1 6.2896 7.7587 1.0113 15 1 7.3874 8.2897 -1.0847 16 1 5.5369 6.7229 -1.0482 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6979 4.0754 -0.4293 20 6 2.0862 4.7647 -2.6182 21 16 3.0808 4.9134 -4.0652 22 6 1.8211 5.7562 -4.8559 23 6 1.8904 6.2809 -6.2670 24 6 2.4499 7.7049 -6.2546 25 7 0.8018 5.8858 -4.0688 26 6 0.8995 5.3729 -2.8680 27 6 -0.2103 5.4509 -1.8516 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9289 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 6.0351 2.2741 -0.6669 38 1 5.8903 2.4796 1.0951 39 1 5.4808 4.9911 -0.1301 40 1 9.5413 6.9579 -0.0377 41 1 4.3111 3.5669 -1.9974 42 1 2.5414 5.6398 -6.8613 43 1 0.8910 6.2870 -6.7018 44 1 1.7990 8.3459 -5.6602 45 1 3.4495 7.6987 -5.8197 46 1 2.5005 8.0842 -7.2752 47 1 -0.0961 6.3577 -1.2577 48 1 -1.1719 5.4714 -2.3645 49 1 -0.1658 4.5802 -1.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717533268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:09 Heat of formation + Delta-G solvation = -27.531828 kcal Electronic energy + Delta-G solvation = -28008.607390 eV Core-core repulsion = 24289.089700 eV Total energy + Delta-G solvation = -3719.517690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62309 -40.59603 -38.02969 -36.36763 -35.27786 -35.21355 -33.42435 -32.24430 -31.74517 -29.49090 -28.73939 -26.50551 -25.74450 -23.62900 -23.55122 -22.90015 -21.83224 -21.73491 -20.70769 -19.71018 -19.06040 -17.88224 -17.48683 -16.85458 -16.54709 -16.33451 -15.98568 -15.70179 -15.55185 -15.27545 -14.91917 -14.80753 -14.56432 -14.47738 -14.41192 -14.01648 -13.91106 -13.76704 -13.47463 -13.31812 -13.00466 -12.98948 -12.93811 -12.65262 -12.60981 -12.42531 -12.17303 -12.13186 -11.98963 -11.90004 -11.85883 -11.48002 -11.37281 -11.13684 -11.05335 -10.77134 -10.62289 -10.11342 -9.80708 -9.34970 -8.06269 -5.39112 -0.87452 0.07522 0.47192 1.29809 1.30246 1.33611 1.38898 1.99351 2.06710 2.41769 2.89037 3.26355 3.40965 3.69858 3.74028 3.84365 3.98815 4.06189 4.13104 4.17781 4.23070 4.27953 4.30922 4.50467 4.51882 4.57972 4.65208 4.74476 4.80441 4.82022 4.88880 4.92379 4.93366 4.97757 5.00215 5.05417 5.12206 5.18506 5.23668 5.28475 5.33022 5.38036 5.52404 5.58639 5.73642 6.17513 6.32210 6.51518 7.02236 7.03693 7.78750 7.96354 9.15100 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006634 B = 0.005449 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4219.702120 B = 5137.465355 C = 8415.548342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.119 4.119 5 C 0.145 3.855 6 H 0.075 0.925 7 C 0.147 3.853 8 N -0.758 5.758 9 C -0.229 4.229 10 H 0.066 0.934 11 C -0.052 4.052 12 N -0.978 5.978 13 Si 0.940 3.060 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.261 1.261 17 N -0.709 5.709 18 C 0.596 3.404 19 O -0.539 6.539 20 C -0.329 4.329 21 S 0.180 5.820 22 C 0.072 3.928 23 C -0.051 4.051 24 C -0.148 4.148 25 N -0.497 5.497 26 C 0.142 3.858 27 C -0.084 4.084 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.362 0.638 40 H 0.258 0.742 41 H 0.402 0.598 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.881 -6.626 -12.250 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.143 4.143 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.093 0.907 7 C 0.021 3.979 8 N -0.404 5.404 9 C -0.360 4.360 10 H 0.084 0.916 11 C -0.244 4.244 12 N -0.628 5.628 13 Si 0.768 3.232 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.186 1.186 17 N -0.360 5.360 18 C 0.382 3.618 19 O -0.419 6.419 20 C -0.453 4.453 21 S 0.439 5.561 22 C -0.203 4.203 23 C -0.091 4.091 24 C -0.207 4.207 25 N -0.212 5.212 26 C 0.004 3.996 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.195 0.805 40 H 0.067 0.933 41 H 0.237 0.763 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.588 -6.792 -12.066 23.987 hybrid contribution -0.433 1.368 0.426 1.497 sum -20.020 -5.423 -11.640 23.785 Atomic orbital electron populations 1.21732 0.95824 1.01761 1.01305 1.21537 0.96016 0.96117 1.02227 1.21559 0.94493 0.96660 1.01575 1.21929 0.96158 0.93869 1.03796 1.21301 0.94075 0.94611 0.85967 0.90651 1.21136 0.90704 0.85853 1.00233 1.42721 1.03679 1.04672 1.89302 1.19046 0.83575 0.93444 1.39934 0.91558 1.25296 0.96841 0.99405 1.02866 1.69838 1.13386 1.20412 1.59208 0.85645 0.79277 0.80301 0.77931 1.21321 1.21711 1.18561 1.45939 1.15419 1.57179 1.17437 1.16735 0.82033 0.77514 0.85483 1.90753 1.51446 1.60470 1.39280 1.25503 1.01120 1.17216 1.01426 1.83999 1.18093 1.50405 1.03619 1.28154 0.91408 0.98270 1.02476 1.20570 1.05545 0.97849 0.85184 1.21807 1.00594 0.94131 1.04121 1.66147 1.29102 1.22405 1.03584 1.20916 0.94626 0.91936 0.92149 1.20618 0.94099 1.04351 0.95211 0.91719 0.93175 0.93700 0.91898 0.91352 0.93011 0.93506 0.90620 0.89290 0.93778 0.93240 0.80482 0.93278 0.76253 0.86836 0.87134 0.93143 0.92933 0.88605 0.90236 0.89453 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.12 -2.36 5.93 30.59 0.18 -2.17 16 3 C -0.11 -2.54 3.81 30.59 0.12 -2.43 16 4 C -0.12 -2.79 4.89 30.59 0.15 -2.64 16 5 C 0.14 4.31 2.41 44.99 0.11 4.42 16 6 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 7 C 0.15 5.16 5.82 86.38 0.50 5.66 16 8 N -0.76 -34.33 5.24 -343.46 -1.80 -36.12 16 9 C -0.23 -12.69 10.47 84.03 0.88 -11.81 16 10 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 11 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 12 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16 13 Si 0.94 46.02 27.73 68.60 1.90 47.92 16 14 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 15 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16 17 N -0.71 -21.26 4.47 -446.52 -1.99 -23.25 16 18 C 0.60 18.67 6.34 86.45 0.55 19.22 16 19 O -0.54 -18.31 11.40 -4.30 -0.05 -18.36 16 20 C -0.33 -9.50 6.48 23.88 0.15 -9.35 16 21 S 0.18 4.25 22.31 -56.49 -1.26 2.99 16 22 C 0.07 1.56 6.64 88.47 0.59 2.15 16 23 C -0.05 -0.69 6.51 29.85 0.19 -0.49 16 24 C -0.15 -1.98 9.89 71.98 0.71 -1.27 16 25 N -0.50 -12.93 10.50 -178.28 -1.87 -14.80 16 26 C 0.14 3.98 6.79 42.09 0.29 4.26 16 27 C -0.08 -2.08 9.69 71.23 0.69 -1.39 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.41 7.84 -2.39 -0.02 1.40 16 34 H 0.05 1.29 5.65 -2.39 -0.01 1.27 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.36 16.44 5.20 -92.70 -0.48 15.96 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.40 11.72 7.79 -92.70 -0.72 11.00 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.09 2.46 6.01 -2.39 -0.01 2.44 16 Total: -1.00 -69.30 404.16 1.21 -68.09 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.31 Total: 35.34 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.29 Total: -0.43 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -5.36 Total: -135.54 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.26 Total: 2.99 kcal Total: -69.30 1.21 -68.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717533268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.554 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds