Wall clock time and date at job start Tue Mar 31 2020 22:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47056 * 2 1 4 4 N 1.30946 * 122.90453 * 270.00134 * 3 2 1 5 5 C 1.29425 * 117.36660 * 180.02562 * 4 3 2 6 6 S 1.70956 * 110.39059 * 359.72171 * 5 4 3 7 7 C 1.35666 * 122.90696 * 90.00199 * 3 2 1 8 8 C 1.46681 * 126.12758 * 359.97438 * 7 3 2 9 9 O 1.21687 * 119.99712 * 6.95592 * 8 7 3 10 10 N 1.34774 * 119.99999 * 186.94787 * 8 7 3 11 11 C 1.46498 * 119.99856 * 5.92580 * 10 8 7 12 12 C 1.46500 * 120.00155 * 185.92851 * 10 8 7 13 13 C 1.52997 * 109.47345 * 270.00301 * 12 10 8 14 14 C 1.53001 * 109.47323 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46437 * 304.99494 * 14 13 12 16 16 N 1.46497 * 109.47076 * 64.99934 * 14 13 12 17 17 C 1.36940 * 119.99745 * 205.00130 * 16 14 13 18 18 H 1.07995 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38807 * 119.99927 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46943 * 90.00400 * 21 19 17 23 23 H 1.48500 * 109.47397 * 209.99846 * 21 19 17 24 24 H 1.48494 * 109.47314 * 330.00317 * 21 19 17 25 25 C 1.53001 * 109.46814 * 184.99811 * 14 13 12 26 26 C 1.53002 * 109.46707 * 179.97438 * 25 14 13 27 27 C 1.53001 * 109.47236 * 299.99912 * 25 14 13 28 28 H 1.09001 * 109.46988 * 60.00184 * 1 2 3 29 29 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47276 * 300.00142 * 1 2 3 31 31 H 1.09004 * 109.46776 * 239.99530 * 2 1 3 32 32 H 1.09005 * 109.47039 * 120.00322 * 2 1 3 33 33 H 1.08004 * 124.80464 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47579 * 275.93753 * 11 10 8 35 35 H 1.09003 * 109.47031 * 35.94082 * 11 10 8 36 36 H 1.09000 * 109.47119 * 155.93674 * 11 10 8 37 37 H 1.09006 * 109.46769 * 30.00525 * 12 10 8 38 38 H 1.09001 * 109.47245 * 150.00080 * 12 10 8 39 39 H 1.09007 * 109.46943 * 300.00178 * 13 12 10 40 40 H 1.09001 * 109.47130 * 59.99709 * 13 12 10 41 41 H 0.96996 * 120.00461 * 24.99500 * 16 14 13 42 42 H 0.97009 * 120.00498 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46961 * 60.00069 * 25 14 13 44 44 H 1.08994 * 109.47544 * 300.00237 * 26 25 14 45 45 H 1.09003 * 109.47050 * 60.00496 * 26 25 14 46 46 H 1.09000 * 109.46653 * 179.97438 * 26 25 14 47 47 H 1.08999 * 109.46880 * 60.00138 * 27 25 14 48 48 H 1.08999 * 109.46712 * 180.02562 * 27 25 14 49 49 H 1.08997 * 109.46840 * 299.99970 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2694 2.0914 -1.0994 5 6 2.6993 3.3058 -0.9745 6 16 2.8386 3.7213 0.6779 7 6 2.2780 2.1156 1.1390 8 6 2.1026 1.6210 2.5087 9 8 1.8243 0.4523 2.7025 10 7 2.2499 2.4607 3.5525 11 6 2.4562 3.8920 3.3176 12 6 2.2036 1.9424 4.9219 13 6 0.7609 1.9726 5.4303 14 6 0.7127 1.4319 6.8607 15 1 1.1628 0.4395 6.8892 16 7 1.4552 2.3307 7.7479 17 6 1.9924 1.8526 8.9132 18 1 1.8684 0.8131 9.1784 19 6 2.6964 2.7041 9.7535 20 7 3.2123 2.2448 10.8739 21 14 2.9115 4.5020 9.2944 22 1 1.7827 5.2927 9.8477 23 1 4.1907 5.0065 9.8549 24 1 2.9318 4.6363 7.8157 25 6 -0.7428 1.3453 7.3244 26 6 -0.7910 0.8039 8.7546 27 6 -1.3746 2.7381 7.2842 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9327 3.9648 -1.7977 34 1 3.5136 4.0811 3.1321 35 1 1.8735 4.2058 2.4515 36 1 2.1351 4.4541 4.1945 37 1 2.5720 0.9165 4.9347 38 1 2.8288 2.5609 5.5659 39 1 0.3926 2.9985 5.4175 40 1 0.1357 1.3541 4.7863 41 1 1.5663 3.2644 7.5098 42 1 3.7040 2.8399 11.4614 43 1 -1.2952 0.6765 6.6643 44 1 -0.3410 -0.1884 8.7829 45 1 -0.2385 1.4723 9.4149 46 1 -1.8279 0.7426 9.0851 47 1 -1.3402 3.1234 6.2651 48 1 -2.4114 2.6764 7.6149 49 1 -0.8222 3.4068 7.9443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725211102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:50 Heat of formation + Delta-G solvation = 16.986180 kcal Electronic energy + Delta-G solvation = -28231.270484 eV Core-core repulsion = 24513.683240 eV Total energy + Delta-G solvation = -3717.587244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65534 -39.44074 -37.57856 -35.72069 -33.61311 -32.85379 -31.90654 -30.44865 -29.56793 -27.33790 -26.69295 -26.35386 -25.12441 -23.46127 -22.93521 -21.87153 -20.63929 -18.92568 -18.76949 -18.59004 -17.54629 -16.76028 -16.39884 -15.89047 -15.25236 -14.88940 -14.77006 -14.37072 -14.23893 -14.05110 -13.83778 -13.70288 -13.58497 -13.31826 -13.08372 -12.84791 -12.64686 -12.53706 -12.31308 -12.10783 -11.76428 -11.43135 -11.36947 -11.35005 -11.05388 -11.02461 -10.87421 -10.49467 -10.42451 -10.31456 -10.08646 -10.02450 -9.86674 -9.73304 -9.69769 -9.40838 -9.20259 -8.92240 -8.62688 -7.25169 -5.76862 -3.10988 0.00018 0.93988 1.32587 2.23165 2.83789 3.01934 3.30345 3.34917 3.42122 3.86624 4.35094 4.56620 4.72105 4.75666 4.80484 5.03663 5.21445 5.23682 5.28544 5.29987 5.34735 5.39003 5.45006 5.55593 5.62794 5.77041 5.79748 5.82990 5.85169 5.94684 5.97994 6.05692 6.15481 6.22048 6.28191 6.35312 6.41912 6.56924 6.62712 6.70310 6.78039 6.84381 7.01756 7.18700 7.38355 7.41666 7.98897 8.01452 8.42079 9.20802 9.92990 10.13495 11.41536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.003150 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.745987 B = 8888.164299 C = 9953.063932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C 0.147 3.853 4 N -0.476 5.476 5 C 0.005 3.995 6 S 0.184 5.816 7 C -0.293 4.293 8 C 0.592 3.408 9 O -0.516 6.516 10 N -0.607 5.607 11 C 0.061 3.939 12 C 0.121 3.879 13 C -0.138 4.138 14 C 0.188 3.812 15 H 0.058 0.942 16 N -0.744 5.744 17 C -0.232 4.232 18 H 0.094 0.906 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.280 1.280 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.138 4.138 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.358 0.642 42 H 0.258 0.742 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 4.385 -23.119 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C 0.009 3.991 4 N -0.190 5.190 5 C -0.290 4.290 6 S 0.440 5.560 7 C -0.417 4.417 8 C 0.379 3.621 9 O -0.394 6.394 10 N -0.340 5.340 11 C -0.084 4.084 12 C 0.000 4.000 13 C -0.177 4.177 14 C 0.078 3.922 15 H 0.076 0.924 16 N -0.387 5.387 17 C -0.362 4.362 18 H 0.111 0.889 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.711 3.289 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.206 1.206 25 C -0.129 4.129 26 C -0.199 4.199 27 C -0.196 4.196 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.216 0.784 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.191 0.809 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.174 4.390 -22.863 23.496 hybrid contribution -0.015 0.930 -0.396 1.011 sum -3.189 5.320 -23.259 24.072 Atomic orbital electron populations 1.21598 0.93887 1.02231 1.01681 1.20479 0.96681 0.88417 1.04784 1.20729 0.95076 0.98189 0.85104 1.66194 1.14964 1.06279 1.31546 1.29047 1.00816 0.96106 1.03021 1.84407 1.59316 1.11698 1.00539 1.25581 1.18002 0.98805 0.99334 1.16730 0.77484 0.85623 0.82297 1.90789 1.47870 1.16290 1.84416 1.47807 1.71524 1.07519 1.07106 1.22019 1.01877 0.81661 1.02795 1.21682 0.98295 1.01332 0.78681 1.22231 0.96044 1.01613 0.97797 1.20192 0.90694 0.94434 0.86848 0.92422 1.42802 1.64603 1.07869 1.23443 1.19080 1.25647 0.96670 0.94813 0.88871 1.24646 1.00563 0.97179 0.96871 1.69689 1.41260 1.34670 1.12637 0.86628 0.77366 0.87435 0.77461 1.21298 1.22016 1.20602 1.21641 0.97951 0.95881 0.97452 1.21852 0.99433 1.01440 0.97147 1.21754 0.99257 0.98032 1.00518 0.93007 0.91717 0.92519 0.90410 0.87312 0.78369 0.91578 0.90997 0.88741 0.89528 0.89171 0.92101 0.91522 0.80907 0.93173 0.93250 0.93884 0.89251 0.95256 0.93957 0.94270 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.06 -0.74 5.84 -27.89 -0.16 -0.90 16 3 C 0.15 1.79 6.04 -83.89 -0.51 1.28 16 4 N -0.48 -5.37 10.50 -11.53 -0.12 -5.49 16 5 C 0.00 0.04 12.22 51.75 0.63 0.67 16 6 S 0.18 1.48 18.15 -107.50 -1.95 -0.47 16 7 C -0.29 -3.51 6.21 -37.09 -0.23 -3.75 16 8 C 0.59 8.32 7.61 -12.85 -0.10 8.22 16 9 O -0.52 -8.52 13.90 5.20 0.07 -8.45 16 10 N -0.61 -7.86 2.87 -183.13 -0.53 -8.39 16 11 C 0.06 0.59 8.85 59.85 0.53 1.12 16 12 C 0.12 1.81 5.22 -4.04 -0.02 1.79 16 13 C -0.14 -2.08 4.57 -26.73 -0.12 -2.21 16 14 C 0.19 3.38 2.19 -67.93 -0.15 3.23 16 15 H 0.06 1.12 8.08 -51.93 -0.42 0.71 16 16 N -0.74 -15.72 3.49 -53.43 -0.19 -15.91 16 17 C -0.23 -5.99 8.05 -15.06 -0.12 -6.11 16 18 H 0.09 2.63 7.62 -52.49 -0.40 2.23 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -28.25 13.97 55.49 0.78 -27.48 16 21 Si 0.88 20.89 27.73 -169.99 -4.71 16.18 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 25 C -0.11 -1.84 2.80 -90.62 -0.25 -2.09 16 26 C -0.14 -2.65 8.26 37.16 0.31 -2.34 16 27 C -0.14 -2.20 8.68 37.16 0.32 -1.87 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 1.42 5.87 -51.93 -0.30 1.12 16 33 H 0.20 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.07 0.56 7.54 -51.93 -0.39 0.16 16 35 H 0.07 0.60 5.13 -28.25 -0.15 0.45 16 36 H 0.09 0.86 8.03 -51.93 -0.42 0.45 16 37 H 0.09 1.42 7.51 -51.93 -0.39 1.03 16 38 H 0.09 1.42 7.68 -51.93 -0.40 1.02 16 39 H 0.06 0.88 6.71 -51.92 -0.35 0.53 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.36 7.46 5.66 -40.82 -0.23 7.23 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.97 6.01 -51.93 -0.31 1.66 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.60 6.54 -51.93 -0.34 0.26 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.09 7.60 -51.93 -0.39 0.70 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -31.21 392.94 -8.22 -39.43 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.89 Total: 8.71 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 0.40 Total: -4.05 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.06 Total: -57.27 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.71 Total: 16.18 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.95 Total: -0.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.21 -8.22 -39.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725211102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.414 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds