Wall clock time and date at job start Tue Mar 31 2020 22:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47056 * 2 1 4 4 N 1.30946 * 122.90453 * 270.00134 * 3 2 1 5 5 C 1.29425 * 117.36660 * 180.02562 * 4 3 2 6 6 S 1.70956 * 110.39059 * 359.72171 * 5 4 3 7 7 C 1.35666 * 122.90696 * 90.00199 * 3 2 1 8 8 C 1.46681 * 126.12758 * 359.97438 * 7 3 2 9 9 O 1.21687 * 119.99712 * 6.95592 * 8 7 3 10 10 N 1.34774 * 119.99999 * 186.94787 * 8 7 3 11 11 C 1.46498 * 119.99856 * 5.92580 * 10 8 7 12 12 C 1.46500 * 120.00155 * 185.92851 * 10 8 7 13 13 C 1.52997 * 109.47345 * 270.00301 * 12 10 8 14 14 C 1.53001 * 109.47323 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46437 * 304.99494 * 14 13 12 16 16 N 1.46497 * 109.47076 * 64.99934 * 14 13 12 17 17 C 1.36940 * 119.99745 * 205.00130 * 16 14 13 18 18 H 1.07995 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38807 * 119.99927 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46943 * 90.00400 * 21 19 17 23 23 H 1.48500 * 109.47397 * 209.99846 * 21 19 17 24 24 H 1.48494 * 109.47314 * 330.00317 * 21 19 17 25 25 C 1.53001 * 109.46814 * 184.99811 * 14 13 12 26 26 C 1.53002 * 109.46707 * 179.97438 * 25 14 13 27 27 C 1.53001 * 109.47236 * 299.99912 * 25 14 13 28 28 H 1.09001 * 109.46988 * 60.00184 * 1 2 3 29 29 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47276 * 300.00142 * 1 2 3 31 31 H 1.09004 * 109.46776 * 239.99530 * 2 1 3 32 32 H 1.09005 * 109.47039 * 120.00322 * 2 1 3 33 33 H 1.08004 * 124.80464 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47579 * 275.93753 * 11 10 8 35 35 H 1.09003 * 109.47031 * 35.94082 * 11 10 8 36 36 H 1.09000 * 109.47119 * 155.93674 * 11 10 8 37 37 H 1.09006 * 109.46769 * 30.00525 * 12 10 8 38 38 H 1.09001 * 109.47245 * 150.00080 * 12 10 8 39 39 H 1.09007 * 109.46943 * 300.00178 * 13 12 10 40 40 H 1.09001 * 109.47130 * 59.99709 * 13 12 10 41 41 H 0.96996 * 120.00461 * 24.99500 * 16 14 13 42 42 H 0.97009 * 120.00498 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46961 * 60.00069 * 25 14 13 44 44 H 1.08994 * 109.47544 * 300.00237 * 26 25 14 45 45 H 1.09003 * 109.47050 * 60.00496 * 26 25 14 46 46 H 1.09000 * 109.46653 * 179.97438 * 26 25 14 47 47 H 1.08999 * 109.46880 * 60.00138 * 27 25 14 48 48 H 1.08999 * 109.46712 * 180.02562 * 27 25 14 49 49 H 1.08997 * 109.46840 * 299.99970 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2694 2.0914 -1.0994 5 6 2.6993 3.3058 -0.9745 6 16 2.8386 3.7213 0.6779 7 6 2.2780 2.1156 1.1390 8 6 2.1026 1.6210 2.5087 9 8 1.8243 0.4523 2.7025 10 7 2.2499 2.4607 3.5525 11 6 2.4562 3.8920 3.3176 12 6 2.2036 1.9424 4.9219 13 6 0.7609 1.9726 5.4303 14 6 0.7127 1.4319 6.8607 15 1 1.1628 0.4395 6.8892 16 7 1.4552 2.3307 7.7479 17 6 1.9924 1.8526 8.9132 18 1 1.8684 0.8131 9.1784 19 6 2.6964 2.7041 9.7535 20 7 3.2123 2.2448 10.8739 21 14 2.9115 4.5020 9.2944 22 1 1.7827 5.2927 9.8477 23 1 4.1907 5.0065 9.8549 24 1 2.9318 4.6363 7.8157 25 6 -0.7428 1.3453 7.3244 26 6 -0.7910 0.8039 8.7546 27 6 -1.3746 2.7381 7.2842 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9327 3.9648 -1.7977 34 1 3.5136 4.0811 3.1321 35 1 1.8735 4.2058 2.4515 36 1 2.1351 4.4541 4.1945 37 1 2.5720 0.9165 4.9347 38 1 2.8288 2.5609 5.5659 39 1 0.3926 2.9985 5.4175 40 1 0.1357 1.3541 4.7863 41 1 1.5663 3.2644 7.5098 42 1 3.7040 2.8399 11.4614 43 1 -1.2952 0.6765 6.6643 44 1 -0.3410 -0.1884 8.7829 45 1 -0.2385 1.4723 9.4149 46 1 -1.8279 0.7426 9.0851 47 1 -1.3402 3.1234 6.2651 48 1 -2.4114 2.6764 7.6149 49 1 -0.8222 3.4068 7.9443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725211102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:49 Heat of formation + Delta-G solvation = -2.416564 kcal Electronic energy + Delta-G solvation = -28232.111850 eV Core-core repulsion = 24513.683240 eV Total energy + Delta-G solvation = -3718.428610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54867 -40.39012 -39.05475 -36.81227 -34.75467 -34.44784 -33.22146 -32.12244 -30.62821 -28.35096 -27.85491 -27.53316 -26.27024 -24.75904 -24.20684 -23.17732 -21.71167 -20.49568 -19.60899 -19.49148 -19.43321 -17.66280 -17.38686 -16.87768 -16.64526 -16.19361 -15.78765 -15.67581 -15.35961 -15.24932 -14.98495 -14.88774 -14.59302 -14.48437 -14.31721 -14.23135 -14.05886 -13.71241 -13.25248 -13.06596 -12.96231 -12.92637 -12.87420 -12.76471 -12.42688 -12.25514 -12.04814 -11.96372 -11.90716 -11.88324 -11.70452 -11.29874 -11.23033 -11.00371 -10.84425 -10.59785 -10.46260 -10.03227 -9.59192 -9.16934 -7.89959 -5.21139 -0.76065 0.22099 0.62568 1.40199 1.40391 1.46229 1.53236 1.85213 2.07158 2.57498 3.17791 3.41245 3.46659 3.66995 3.92117 3.95702 4.02816 4.09392 4.14975 4.23680 4.34903 4.36713 4.37862 4.45547 4.51372 4.58953 4.63699 4.66413 4.73218 4.87359 4.95382 4.96683 5.00702 5.01822 5.07284 5.16786 5.19883 5.27512 5.30815 5.35521 5.41022 5.45678 5.60273 5.79383 5.92934 6.20618 6.32625 6.63506 6.97586 7.20172 7.94629 8.16357 9.31994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.003150 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.745987 B = 8888.164299 C = 9953.063932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C 0.140 3.860 4 N -0.505 5.505 5 C 0.013 3.987 6 S 0.251 5.749 7 C -0.331 4.331 8 C 0.587 3.413 9 O -0.554 6.554 10 N -0.607 5.607 11 C 0.053 3.947 12 C 0.128 3.872 13 C -0.121 4.121 14 C 0.186 3.814 15 H 0.034 0.966 16 N -0.738 5.738 17 C -0.200 4.200 18 H 0.056 0.944 19 C -0.070 4.070 20 N -0.991 5.991 21 Si 0.946 3.054 22 H -0.286 1.286 23 H -0.307 1.307 24 H -0.240 1.240 25 C -0.106 4.106 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.365 0.635 42 H 0.252 0.748 43 H 0.069 0.931 44 H 0.030 0.970 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 7.412 -26.423 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.105 4.105 3 C 0.001 3.999 4 N -0.219 5.219 5 C -0.280 4.280 6 S 0.508 5.492 7 C -0.454 4.454 8 C 0.375 3.625 9 O -0.434 6.434 10 N -0.338 5.338 11 C -0.091 4.091 12 C 0.006 3.994 13 C -0.160 4.160 14 C 0.078 3.922 15 H 0.053 0.947 16 N -0.382 5.382 17 C -0.332 4.332 18 H 0.074 0.926 19 C -0.260 4.260 20 N -0.643 5.643 21 Si 0.774 3.226 22 H -0.212 1.212 23 H -0.234 1.234 24 H -0.164 1.164 25 C -0.127 4.127 26 C -0.194 4.194 27 C -0.190 4.190 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.199 0.801 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.038 7.453 -26.238 27.573 hybrid contribution 0.224 -0.087 0.565 0.614 sum -3.814 7.366 -25.673 26.980 Atomic orbital electron populations 1.21526 0.93287 1.02726 1.01060 1.20424 0.97231 0.88864 1.04017 1.20796 0.95027 0.98354 0.85699 1.66245 1.16786 1.07676 1.31242 1.29768 0.98165 0.95462 1.04592 1.84039 1.57556 1.08061 0.99502 1.25457 1.20159 1.01768 0.98050 1.17059 0.76839 0.85271 0.83295 1.90764 1.49550 1.17906 1.85180 1.47798 1.71228 1.08939 1.05881 1.22298 1.03273 0.79467 1.04063 1.21413 0.97873 1.00094 0.80028 1.22045 0.96361 1.02356 0.95266 1.20300 0.90834 0.92946 0.88165 0.94737 1.42678 1.64604 1.08563 1.22326 1.18924 1.23647 0.94935 0.95661 0.92565 1.25399 1.01462 1.02117 0.97045 1.69892 1.43526 1.36330 1.14529 0.85533 0.76334 0.81305 0.79380 1.21232 1.23424 1.16421 1.21599 0.97295 0.97456 0.96317 1.21760 0.99930 0.99846 0.97865 1.21696 0.99566 0.96248 1.01478 0.92363 0.90740 0.94138 0.89704 0.89407 0.74536 0.90056 0.89479 0.87656 0.91937 0.89669 0.90253 0.91297 0.80098 0.93890 0.91220 0.95123 0.93044 0.93179 0.91725 0.92814 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.89 71.98 0.71 -1.97 16 2 C -0.07 -1.53 5.84 29.85 0.17 -1.35 16 3 C 0.14 3.27 6.04 42.09 0.25 3.52 16 4 N -0.51 -10.26 10.50 -190.40 -2.00 -12.26 16 5 C 0.01 0.17 12.22 130.60 1.60 1.76 16 6 S 0.25 3.12 18.15 -56.49 -1.03 2.10 16 7 C -0.33 -7.41 6.21 23.88 0.15 -7.26 16 8 C 0.59 16.13 7.61 86.45 0.66 16.78 16 9 O -0.55 -18.76 13.90 -4.31 -0.06 -18.82 16 10 N -0.61 -14.68 2.87 -851.51 -2.45 -17.13 16 11 C 0.05 0.82 8.85 127.77 1.13 1.95 16 12 C 0.13 3.71 5.22 86.38 0.45 4.17 16 13 C -0.12 -3.45 4.57 30.59 0.14 -3.31 16 14 C 0.19 6.59 2.19 44.99 0.10 6.69 16 15 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 16 N -0.74 -30.79 3.49 -322.95 -1.13 -31.92 16 17 C -0.20 -10.62 8.05 84.03 0.68 -9.94 16 18 H 0.06 3.36 7.62 -2.91 -0.02 3.34 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 20 N -0.99 -62.41 13.97 21.65 0.30 -62.11 16 21 Si 0.95 42.97 27.73 68.60 1.90 44.87 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 24 H -0.24 -9.21 6.52 99.48 0.65 -8.56 16 25 C -0.11 -3.45 2.80 -10.79 -0.03 -3.48 16 26 C -0.14 -5.14 8.26 71.98 0.59 -4.55 16 27 C -0.13 -3.83 8.68 71.98 0.63 -3.20 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.09 2.42 5.87 -2.38 -0.01 2.40 16 33 H 0.24 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.08 1.05 7.54 -2.39 -0.02 1.03 16 35 H 0.09 1.09 5.13 -17.44 -0.09 1.00 16 36 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 37 H 0.06 2.11 7.51 -2.38 -0.02 2.09 16 38 H 0.08 2.55 7.68 -2.39 -0.02 2.53 16 39 H 0.08 2.00 6.71 -2.38 -0.02 1.98 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.37 14.38 5.66 -92.71 -0.52 13.86 16 42 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 2.32 6.01 -2.39 -0.01 2.31 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.58 6.54 -2.39 -0.02 1.56 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.04 1.37 7.60 -2.39 -0.02 1.35 16 Total: -1.00 -72.10 392.94 3.53 -68.57 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.29 Total: 30.37 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 7.70 Total: -3.67 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.27 Total: -123.41 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.03 Total: 2.10 kcal Total: -72.10 3.53 -68.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725211102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.150 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds