Wall clock time and date at job start Tue Mar 31 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46885 * 2 1 4 4 N 1.29433 * 124.80496 * 90.02334 * 3 2 1 5 5 C 1.30942 * 117.36243 * 179.97438 * 4 3 2 6 6 C 1.35659 * 114.19305 * 359.97438 * 5 4 3 7 7 C 1.46682 * 126.13097 * 180.02562 * 6 5 4 8 8 O 1.21687 * 120.00222 * 6.72098 * 7 6 5 9 9 N 1.34777 * 119.99821 * 186.72007 * 7 6 5 10 10 C 1.46502 * 120.00470 * 5.99561 * 9 7 6 11 11 C 1.46504 * 119.99947 * 185.99931 * 9 7 6 12 12 C 1.53004 * 109.46782 * 269.99823 * 11 9 7 13 13 C 1.52998 * 109.47009 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.47301 * 305.00002 * 13 12 11 15 15 N 1.46504 * 109.47200 * 65.00330 * 13 12 11 16 16 C 1.36930 * 119.99906 * 204.99929 * 15 13 12 17 17 H 1.07991 * 120.00670 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99570 * 179.71946 * 16 15 13 19 19 N 1.31613 * 120.00181 * 0.27901 * 18 16 15 20 20 Si 1.86801 * 119.99643 * 180.27604 * 18 16 15 21 21 H 1.48498 * 109.47082 * 90.00585 * 20 18 16 22 22 H 1.48498 * 109.47144 * 210.00000 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00119 * 20 18 16 24 24 C 1.53000 * 109.47111 * 185.00101 * 13 12 11 25 25 C 1.53006 * 109.47154 * 304.99864 * 24 13 12 26 26 C 1.52993 * 109.47390 * 65.00092 * 24 13 12 27 27 S 1.70956 * 124.80240 * 270.29352 * 3 2 1 28 28 H 1.09005 * 109.47371 * 300.00477 * 1 2 3 29 29 H 1.09005 * 109.46701 * 60.00535 * 1 2 3 30 30 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47162 * 239.99824 * 2 1 3 32 32 H 1.09005 * 109.46701 * 119.99465 * 2 1 3 33 33 H 1.08000 * 122.90460 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47109 * 275.90644 * 10 9 7 35 35 H 1.09006 * 109.46949 * 35.90173 * 10 9 7 36 36 H 1.08997 * 109.47324 * 155.90049 * 10 9 7 37 37 H 1.08997 * 109.47112 * 150.00143 * 11 9 7 38 38 H 1.09000 * 109.46996 * 29.99204 * 11 9 7 39 39 H 1.09005 * 109.47081 * 59.99953 * 12 11 9 40 40 H 1.08994 * 109.47272 * 300.00021 * 12 11 9 41 41 H 0.97002 * 119.99495 * 24.99270 * 15 13 12 42 42 H 0.97001 * 120.00410 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47237 * 185.00602 * 24 13 12 44 44 H 1.08999 * 109.46445 * 60.00253 * 25 24 13 45 45 H 1.08997 * 109.46733 * 179.97438 * 25 24 13 46 46 H 1.08997 * 109.47006 * 300.00197 * 25 24 13 47 47 H 1.09002 * 109.46978 * 59.99616 * 26 24 13 48 48 H 1.08997 * 109.47815 * 179.97438 * 26 24 13 49 49 H 1.08999 * 109.47347 * 300.00442 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2790 2.1173 1.0628 5 6 2.7121 3.3413 0.8932 6 6 2.8429 3.7097 -0.4059 7 6 3.3051 5.0139 -0.8926 8 8 3.7290 5.8412 -0.1072 9 7 3.2604 5.2961 -2.2098 10 6 2.6305 4.3553 -3.1395 11 6 3.8418 6.5436 -2.7118 12 6 2.7775 7.6427 -2.7012 13 6 3.3848 8.9457 -3.2249 14 1 4.2715 9.1936 -2.6414 15 7 3.7568 8.7801 -4.6322 16 6 4.7421 9.5601 -5.1763 17 1 5.2452 10.2969 -4.5679 18 6 5.0985 9.3991 -6.5082 19 7 4.4858 8.5007 -7.2495 20 14 6.4480 10.4577 -7.2484 21 1 7.7588 9.7822 -7.0739 22 1 6.1828 10.6573 -8.6958 23 1 6.4750 11.7753 -6.5638 24 6 2.3590 10.0737 -3.0979 25 6 1.0676 9.6717 -3.8134 26 6 2.0638 10.3306 -1.6189 27 16 2.3507 2.3432 -1.4037 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9459 4.0002 1.7163 34 1 3.3496 3.5861 -3.4209 35 1 1.7703 3.8898 -2.6583 36 1 2.3028 4.8900 -4.0310 37 1 4.1992 6.3937 -3.7306 38 1 4.6751 6.8385 -2.0741 39 1 2.4201 7.7926 -1.6823 40 1 1.9442 7.3478 -3.3388 41 1 3.3052 8.1179 -5.1785 42 1 4.7346 8.3884 -8.1804 43 1 2.7583 10.9808 -3.5516 44 1 0.6683 8.7646 -3.3597 45 1 0.3367 10.4751 -3.7225 46 1 1.2780 9.4887 -4.8671 47 1 2.9837 10.6170 -1.1092 48 1 1.3333 11.1345 -1.5283 49 1 1.6644 9.4235 -1.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725215084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:24 Heat of formation + Delta-G solvation = 7.805975 kcal Electronic energy + Delta-G solvation = -27530.851968 eV Core-core repulsion = 23812.866641 eV Total energy + Delta-G solvation = -3717.985328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34584 -39.41654 -37.44582 -35.53705 -34.36787 -33.17910 -31.56336 -30.23685 -29.28002 -27.12835 -26.60016 -26.39302 -25.01353 -23.45802 -22.93905 -22.20227 -20.91606 -18.87979 -18.55828 -18.32909 -17.23310 -16.74613 -16.33687 -15.80947 -15.21866 -14.98486 -14.75930 -14.47504 -14.29665 -14.05207 -13.88505 -13.64885 -13.37235 -13.23945 -13.08891 -12.93195 -12.72085 -12.54847 -12.14755 -12.02723 -11.78339 -11.68772 -11.60063 -11.58340 -11.13554 -10.96172 -10.87736 -10.50706 -10.36061 -10.21658 -10.12347 -10.11605 -9.79699 -9.64829 -9.58425 -9.54697 -9.17632 -8.89309 -8.54694 -6.93632 -5.77712 -3.04799 0.05060 0.96367 1.38386 2.29572 2.94068 3.11925 3.42960 3.49332 3.49907 3.76257 4.43251 4.52477 4.59706 4.75479 4.78258 4.87581 5.07714 5.16871 5.20709 5.37748 5.39611 5.45009 5.48002 5.49914 5.55209 5.66120 5.69133 5.72347 5.81437 5.89348 5.95047 6.03670 6.13625 6.15652 6.23803 6.37547 6.40133 6.48565 6.54889 6.74536 6.83139 6.88914 7.07670 7.14926 7.29152 7.43968 7.72252 8.06057 8.41582 9.53213 10.10365 10.45909 11.44992 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002593 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.282121 B =10795.538157 C =11562.707527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.029 3.971 4 N -0.482 5.482 5 C 0.117 3.883 6 C -0.292 4.292 7 C 0.589 3.411 8 O -0.524 6.524 9 N -0.605 5.605 10 C 0.062 3.938 11 C 0.121 3.879 12 C -0.136 4.136 13 C 0.185 3.815 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.232 4.232 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.903 3.097 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.145 4.145 27 S 0.193 5.807 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.382 0.618 42 H 0.254 0.746 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -16.684 11.984 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.245 4.245 4 N -0.196 5.196 5 C -0.040 4.040 6 C -0.416 4.416 7 C 0.376 3.624 8 O -0.402 6.402 9 N -0.337 5.337 10 C -0.083 4.083 11 C 0.000 4.000 12 C -0.175 4.175 13 C 0.074 3.926 14 H 0.067 0.933 15 N -0.361 5.361 16 C -0.364 4.364 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.734 3.266 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.135 4.135 25 C -0.194 4.194 26 C -0.203 4.203 27 S 0.451 5.549 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.922 -16.619 11.754 22.225 hybrid contribution 0.746 0.967 -0.019 1.221 sum -8.176 -15.652 11.736 21.203 Atomic orbital electron populations 1.21779 0.93273 1.02721 1.02827 1.20274 0.96876 0.87549 1.04412 1.27936 1.00813 1.02083 0.93638 1.66274 1.15458 1.05993 1.31872 1.22145 0.94932 0.91447 0.95495 1.25857 1.17307 1.00542 0.97889 1.16800 0.78668 0.84521 0.82450 1.90843 1.46963 1.47687 1.54708 1.47822 1.57846 1.22048 1.05959 1.22023 0.97670 0.93575 0.95032 1.21705 0.96212 0.81212 1.00838 1.22241 0.98306 0.95787 1.01189 1.20195 0.94427 0.90761 0.87194 0.93343 1.42443 1.43508 1.44525 1.05665 1.19236 1.10487 1.13115 0.93530 0.91267 1.24679 1.00084 0.99504 0.96649 1.69638 1.44462 1.36852 1.07395 0.86249 0.81933 0.79996 0.78390 1.21854 1.21927 1.20855 1.21755 0.97004 1.00903 0.93818 1.21733 0.96504 0.99476 1.01658 1.21887 1.00590 1.00509 0.97324 1.84401 1.58053 1.02912 1.09485 0.91880 0.92241 0.91239 0.89469 0.88759 0.79713 0.91596 0.91198 0.88285 0.88625 0.90022 0.91623 0.91915 0.78425 0.93655 0.91262 0.93804 0.94563 0.91743 0.93276 0.93897 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 2 C -0.05 -0.31 6.51 -27.88 -0.18 -0.49 16 3 C 0.03 0.27 6.64 -13.29 -0.09 0.19 16 4 N -0.48 -5.66 10.51 -11.50 -0.12 -5.78 16 5 C 0.12 1.45 11.10 -18.85 -0.21 1.24 16 6 C -0.29 -3.66 6.22 -37.10 -0.23 -3.89 16 7 C 0.59 8.92 7.62 -12.85 -0.10 8.82 16 8 O -0.52 -9.57 16.52 5.20 0.09 -9.49 16 9 N -0.60 -8.49 2.87 -183.12 -0.53 -9.01 16 10 C 0.06 0.66 8.85 59.85 0.53 1.19 16 11 C 0.12 1.97 5.22 -4.04 -0.02 1.95 16 12 C -0.14 -2.24 4.28 -26.73 -0.11 -2.36 16 13 C 0.18 3.54 2.06 -67.93 -0.14 3.40 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -16.66 4.03 -53.43 -0.22 -16.88 16 16 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 20 Si 0.90 22.02 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.11 -2.02 2.88 -90.62 -0.26 -2.28 16 25 C -0.14 -2.30 8.60 37.16 0.32 -1.99 16 26 C -0.15 -2.22 8.95 37.15 0.33 -1.89 16 27 S 0.19 1.75 18.10 -107.50 -1.95 -0.20 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.07 0.62 7.55 -51.93 -0.39 0.23 16 35 H 0.07 0.64 5.13 -28.13 -0.14 0.50 16 36 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 37 H 0.10 1.67 7.68 -51.93 -0.40 1.28 16 38 H 0.08 1.45 7.51 -51.93 -0.39 1.06 16 39 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 40 H 0.06 1.01 6.65 -51.93 -0.35 0.66 16 41 H 0.38 9.31 7.80 -40.82 -0.32 8.99 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.04 0.68 6.46 -51.93 -0.34 0.34 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.75 6.46 -51.93 -0.34 0.41 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -31.12 403.12 -8.99 -40.11 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.00 Total: 7.67 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.04 Total: -3.30 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.14 Total: -57.87 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.95 Total: -0.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.12 -8.99 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725215084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.917 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds