Wall clock time and date at job start Tue Mar 31 2020 23:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46885 * 2 1 4 4 N 1.29433 * 124.80496 * 90.02334 * 3 2 1 5 5 C 1.30942 * 117.36243 * 179.97438 * 4 3 2 6 6 C 1.35659 * 114.19305 * 359.97438 * 5 4 3 7 7 C 1.46682 * 126.13097 * 180.02562 * 6 5 4 8 8 O 1.21687 * 120.00222 * 6.72098 * 7 6 5 9 9 N 1.34777 * 119.99821 * 186.72007 * 7 6 5 10 10 C 1.46502 * 120.00470 * 5.99561 * 9 7 6 11 11 C 1.46504 * 119.99947 * 185.99931 * 9 7 6 12 12 C 1.53004 * 109.46782 * 269.99823 * 11 9 7 13 13 C 1.52998 * 109.47009 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.47301 * 305.00002 * 13 12 11 15 15 N 1.46504 * 109.47200 * 65.00330 * 13 12 11 16 16 C 1.36930 * 119.99906 * 204.99929 * 15 13 12 17 17 H 1.07991 * 120.00670 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99570 * 179.71946 * 16 15 13 19 19 N 1.31613 * 120.00181 * 0.27901 * 18 16 15 20 20 Si 1.86801 * 119.99643 * 180.27604 * 18 16 15 21 21 H 1.48498 * 109.47082 * 90.00585 * 20 18 16 22 22 H 1.48498 * 109.47144 * 210.00000 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00119 * 20 18 16 24 24 C 1.53000 * 109.47111 * 185.00101 * 13 12 11 25 25 C 1.53006 * 109.47154 * 304.99864 * 24 13 12 26 26 C 1.52993 * 109.47390 * 65.00092 * 24 13 12 27 27 S 1.70956 * 124.80240 * 270.29352 * 3 2 1 28 28 H 1.09005 * 109.47371 * 300.00477 * 1 2 3 29 29 H 1.09005 * 109.46701 * 60.00535 * 1 2 3 30 30 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47162 * 239.99824 * 2 1 3 32 32 H 1.09005 * 109.46701 * 119.99465 * 2 1 3 33 33 H 1.08000 * 122.90460 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47109 * 275.90644 * 10 9 7 35 35 H 1.09006 * 109.46949 * 35.90173 * 10 9 7 36 36 H 1.08997 * 109.47324 * 155.90049 * 10 9 7 37 37 H 1.08997 * 109.47112 * 150.00143 * 11 9 7 38 38 H 1.09000 * 109.46996 * 29.99204 * 11 9 7 39 39 H 1.09005 * 109.47081 * 59.99953 * 12 11 9 40 40 H 1.08994 * 109.47272 * 300.00021 * 12 11 9 41 41 H 0.97002 * 119.99495 * 24.99270 * 15 13 12 42 42 H 0.97001 * 120.00410 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47237 * 185.00602 * 24 13 12 44 44 H 1.08999 * 109.46445 * 60.00253 * 25 24 13 45 45 H 1.08997 * 109.46733 * 179.97438 * 25 24 13 46 46 H 1.08997 * 109.47006 * 300.00197 * 25 24 13 47 47 H 1.09002 * 109.46978 * 59.99616 * 26 24 13 48 48 H 1.08997 * 109.47815 * 179.97438 * 26 24 13 49 49 H 1.08999 * 109.47347 * 300.00442 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2790 2.1173 1.0628 5 6 2.7121 3.3413 0.8932 6 6 2.8429 3.7097 -0.4059 7 6 3.3051 5.0139 -0.8926 8 8 3.7290 5.8412 -0.1072 9 7 3.2604 5.2961 -2.2098 10 6 2.6305 4.3553 -3.1395 11 6 3.8418 6.5436 -2.7118 12 6 2.7775 7.6427 -2.7012 13 6 3.3848 8.9457 -3.2249 14 1 4.2715 9.1936 -2.6414 15 7 3.7568 8.7801 -4.6322 16 6 4.7421 9.5601 -5.1763 17 1 5.2452 10.2969 -4.5679 18 6 5.0985 9.3991 -6.5082 19 7 4.4858 8.5007 -7.2495 20 14 6.4480 10.4577 -7.2484 21 1 7.7588 9.7822 -7.0739 22 1 6.1828 10.6573 -8.6958 23 1 6.4750 11.7753 -6.5638 24 6 2.3590 10.0737 -3.0979 25 6 1.0676 9.6717 -3.8134 26 6 2.0638 10.3306 -1.6189 27 16 2.3507 2.3432 -1.4037 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9459 4.0002 1.7163 34 1 3.3496 3.5861 -3.4209 35 1 1.7703 3.8898 -2.6583 36 1 2.3028 4.8900 -4.0310 37 1 4.1992 6.3937 -3.7306 38 1 4.6751 6.8385 -2.0741 39 1 2.4201 7.7926 -1.6823 40 1 1.9442 7.3478 -3.3388 41 1 3.3052 8.1179 -5.1785 42 1 4.7346 8.3884 -8.1804 43 1 2.7583 10.9808 -3.5516 44 1 0.6683 8.7646 -3.3597 45 1 0.3367 10.4751 -3.7225 46 1 1.2780 9.4887 -4.8671 47 1 2.9837 10.6170 -1.1092 48 1 1.3333 11.1345 -1.5283 49 1 1.6644 9.4235 -1.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725215084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:23 Heat of formation + Delta-G solvation = -10.444998 kcal Electronic energy + Delta-G solvation = -27531.643390 eV Core-core repulsion = 23812.866641 eV Total energy + Delta-G solvation = -3718.776749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37189 -40.43095 -38.96222 -36.75897 -35.07234 -34.95026 -32.94219 -31.76742 -30.46777 -28.15851 -27.94150 -27.41877 -26.32630 -24.99258 -23.94397 -23.44673 -22.00359 -19.91064 -19.76599 -19.47724 -19.20287 -17.75910 -17.39968 -17.02728 -16.59409 -16.18843 -15.85515 -15.65335 -15.46371 -15.25676 -14.91533 -14.89316 -14.73868 -14.45879 -14.34083 -14.22292 -13.69642 -13.54394 -13.25071 -13.06970 -12.90580 -12.87004 -12.78855 -12.62649 -12.55760 -12.49913 -12.19085 -12.07787 -12.04078 -11.82578 -11.71965 -11.40455 -11.33293 -11.07279 -10.84448 -10.61001 -10.44129 -10.08594 -9.64419 -8.89675 -7.88893 -5.13829 -0.81348 0.14795 0.56694 1.35229 1.48421 1.49330 1.56632 1.82456 2.06451 2.59447 3.04628 3.44287 3.45096 3.89786 3.91861 3.95782 4.02217 4.10390 4.16961 4.24882 4.29706 4.32350 4.35903 4.43599 4.54831 4.59346 4.67572 4.69574 4.74592 4.77947 4.89046 4.97324 4.99733 5.01703 5.06492 5.10123 5.13298 5.20969 5.32608 5.34985 5.40167 5.44538 5.55924 5.62429 5.69615 6.17887 6.34329 6.59903 6.90845 7.41766 8.16629 8.43128 9.34004 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002593 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.282121 B =10795.538157 C =11562.707527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.033 3.967 4 N -0.507 5.507 5 C 0.117 3.883 6 C -0.325 4.325 7 C 0.587 3.413 8 O -0.567 6.567 9 N -0.604 5.604 10 C 0.055 3.945 11 C 0.132 3.868 12 C -0.119 4.119 13 C 0.183 3.817 14 H 0.032 0.968 15 N -0.723 5.723 16 C -0.228 4.228 17 H 0.066 0.934 18 C -0.068 4.068 19 N -0.963 5.963 20 Si 0.959 3.041 21 H -0.291 1.291 22 H -0.297 1.297 23 H -0.277 1.277 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.137 4.137 27 S 0.254 5.746 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.376 0.624 42 H 0.249 0.751 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.036 0.964 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -18.350 12.194 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.240 4.240 4 N -0.222 5.222 5 C -0.041 4.041 6 C -0.449 4.449 7 C 0.375 3.625 8 O -0.448 6.448 9 N -0.335 5.335 10 C -0.088 4.088 11 C 0.009 3.991 12 C -0.158 4.158 13 C 0.074 3.926 14 H 0.050 0.950 15 N -0.363 5.363 16 C -0.361 4.361 17 H 0.084 0.916 18 C -0.261 4.261 19 N -0.614 5.614 20 Si 0.790 3.210 21 H -0.218 1.218 22 H -0.224 1.224 23 H -0.202 1.202 24 C -0.132 4.132 25 C -0.186 4.186 26 C -0.195 4.195 27 S 0.513 5.487 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.198 0.802 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.260 -18.298 11.973 24.155 hybrid contribution 1.112 1.391 -0.021 1.781 sum -9.148 -16.907 11.952 22.636 Atomic orbital electron populations 1.21786 0.92453 1.03936 1.02240 1.20522 0.97424 0.85542 1.05903 1.28622 0.98765 1.03168 0.93440 1.66348 1.16884 1.05915 1.33005 1.22192 0.94536 0.91852 0.95562 1.25632 1.19436 1.00904 0.98974 1.17124 0.77959 0.85130 0.82253 1.90806 1.48942 1.49307 1.55740 1.47808 1.57632 1.21734 1.06318 1.22266 0.98518 0.93420 0.94630 1.21382 0.95724 0.82445 0.99517 1.22047 0.98250 0.94327 1.01185 1.20323 0.94495 0.92848 0.84930 0.94959 1.42482 1.42906 1.43894 1.07029 1.19488 1.10423 1.12601 0.93561 0.91559 1.25307 1.02414 1.01110 0.97269 1.69760 1.45962 1.38435 1.07255 0.85351 0.79612 0.78854 0.77227 1.21826 1.22404 1.20189 1.21640 0.96875 0.98887 0.95777 1.21647 0.96285 1.00909 0.99733 1.21800 1.01133 1.01564 0.94993 1.84037 1.56583 1.00310 1.07731 0.93387 0.91911 0.89183 0.86884 0.88386 0.80218 0.89983 0.89484 0.87848 0.89941 0.92081 0.91214 0.91030 0.79162 0.94221 0.93868 0.92140 0.92829 0.94529 0.93413 0.92074 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.05 -0.50 6.51 29.85 0.19 -0.30 16 3 C 0.03 0.55 6.64 88.46 0.59 1.14 16 4 N -0.51 -11.37 10.51 -190.30 -2.00 -13.37 16 5 C 0.12 2.88 11.10 84.23 0.93 3.82 16 6 C -0.33 -7.95 6.22 23.88 0.15 -7.80 16 7 C 0.59 17.84 7.62 86.45 0.66 18.50 16 8 O -0.57 -21.34 16.52 -4.31 -0.07 -21.41 16 9 N -0.60 -16.72 2.87 -851.49 -2.45 -19.17 16 10 C 0.06 1.08 8.85 127.77 1.13 2.21 16 11 C 0.13 4.35 5.22 86.38 0.45 4.80 16 12 C -0.12 -3.89 4.28 30.60 0.13 -3.76 16 13 C 0.18 7.09 2.06 44.99 0.09 7.18 16 14 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 15 N -0.72 -34.02 4.03 -322.94 -1.30 -35.32 16 16 C -0.23 -12.26 9.93 84.04 0.83 -11.42 16 17 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 18 C -0.07 -3.81 5.50 84.87 0.47 -3.34 16 19 N -0.96 -56.23 13.06 21.65 0.28 -55.95 16 20 Si 0.96 45.73 29.55 68.60 2.03 47.76 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.11 -3.90 2.88 -10.79 -0.03 -3.93 16 25 C -0.13 -4.19 8.60 71.98 0.62 -3.57 16 26 C -0.14 -3.98 8.95 71.98 0.64 -3.34 16 27 S 0.25 3.98 18.10 -56.49 -1.02 2.95 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.08 1.35 7.55 -2.39 -0.02 1.33 16 35 H 0.09 1.39 5.13 -17.51 -0.09 1.30 16 36 H 0.10 1.97 8.03 -2.39 -0.02 1.95 16 37 H 0.08 2.95 7.68 -2.39 -0.02 2.93 16 38 H 0.06 2.26 7.51 -2.39 -0.02 2.25 16 39 H 0.07 2.26 6.34 -2.38 -0.02 2.25 16 40 H 0.07 2.23 6.65 -2.39 -0.02 2.21 16 41 H 0.38 18.62 7.80 -92.71 -0.72 17.90 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 1.75 6.46 -2.39 -0.02 1.74 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 49 H 0.06 1.62 6.46 -2.39 -0.02 1.60 16 Total: -1.00 -68.31 403.12 3.19 -65.12 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.14 Total: 29.67 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 7.58 Total: -0.27 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -5.46 Total: -123.81 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.41 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.02 Total: 2.95 kcal Total: -68.31 3.19 -65.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725215084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.673 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds