Wall clock time and date at job start Tue Mar 31 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47179 * 2 1 4 4 N 1.29429 * 124.80588 * 90.02860 * 3 2 1 5 5 C 1.30944 * 117.36326 * 179.97438 * 4 3 2 6 6 C 1.35658 * 114.19260 * 359.97438 * 5 4 3 7 7 C 1.46686 * 126.13200 * 180.02562 * 6 5 4 8 8 O 1.21686 * 119.99614 * 6.71600 * 7 6 5 9 9 N 1.34772 * 119.99851 * 186.71826 * 7 6 5 10 10 C 1.46498 * 120.00435 * 5.99832 * 9 7 6 11 11 C 1.46499 * 119.99857 * 185.99658 * 9 7 6 12 12 C 1.52998 * 109.47337 * 270.00161 * 11 9 7 13 13 C 1.52999 * 109.47396 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47154 * 55.00316 * 13 12 11 15 15 N 1.46496 * 109.47424 * 295.00044 * 13 12 11 16 16 C 1.36934 * 119.99999 * 154.99841 * 15 13 12 17 17 H 1.07994 * 120.00397 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99575 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00156 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47312 * 59.99516 * 20 18 16 22 22 H 1.48493 * 109.47290 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 300.00131 * 20 18 16 24 24 C 1.53001 * 109.47412 * 174.99722 * 13 12 11 25 25 C 1.53005 * 109.46882 * 65.00216 * 24 13 12 26 26 C 1.52998 * 109.47508 * 185.00258 * 24 13 12 27 27 S 1.70948 * 124.80305 * 270.29424 * 3 2 1 28 28 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47068 * 300.00556 * 1 2 3 30 30 H 1.09003 * 109.46928 * 59.99870 * 1 2 3 31 31 H 1.09002 * 109.47577 * 239.99393 * 2 1 3 32 32 H 1.09009 * 109.47282 * 119.99894 * 2 1 3 33 33 H 1.08003 * 122.90454 * 179.97438 * 5 4 3 34 34 H 1.09008 * 109.46873 * 275.90310 * 10 9 7 35 35 H 1.09000 * 109.46988 * 35.90040 * 10 9 7 36 36 H 1.09003 * 109.47341 * 155.90280 * 10 9 7 37 37 H 1.08995 * 109.47211 * 149.99935 * 11 9 7 38 38 H 1.08998 * 109.47177 * 30.00085 * 11 9 7 39 39 H 1.09005 * 109.47272 * 59.99669 * 12 11 9 40 40 H 1.08998 * 109.46925 * 300.00078 * 12 11 9 41 41 H 0.97000 * 119.99853 * 335.00415 * 15 13 12 42 42 H 0.97003 * 119.99769 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.47013 * 305.00703 * 24 13 12 44 44 H 1.08994 * 109.46998 * 59.99948 * 25 24 13 45 45 H 1.09003 * 109.46777 * 180.02562 * 25 24 13 46 46 H 1.09000 * 109.47010 * 300.00000 * 25 24 13 47 47 H 1.09000 * 109.47300 * 59.99821 * 26 24 13 48 48 H 1.08998 * 109.47492 * 180.02562 * 26 24 13 49 49 H 1.09004 * 109.46876 * 300.00478 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7123 3.3412 0.8931 6 6 2.8430 3.7096 -0.4059 7 6 3.3052 5.0139 -0.8927 8 8 3.7291 5.8410 -0.1073 9 7 3.2604 5.2960 -2.2098 10 6 2.6304 4.3553 -3.1395 11 6 3.8418 6.5435 -2.7119 12 6 2.7776 7.6427 -2.7011 13 6 3.3850 8.9457 -3.2249 14 1 3.8218 8.7733 -4.2085 15 7 4.4258 9.4050 -2.3020 16 6 5.4370 10.2091 -2.7558 17 1 5.4675 10.5043 -3.7941 18 6 6.4236 10.6438 -1.8813 19 7 6.3868 10.2835 -0.6160 20 14 7.8035 11.7402 -2.5005 21 1 7.2303 12.9960 -3.0478 22 1 8.7207 12.0631 -1.3782 23 1 8.5562 11.0334 -3.5679 24 6 2.2920 10.0110 -3.3319 25 6 1.7650 10.3431 -1.9344 26 6 2.8717 11.2740 -3.9718 27 16 2.3507 2.3431 -1.4037 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.9454 4.0004 1.7162 34 1 3.3496 3.5860 -3.4210 35 1 1.7703 3.8899 -2.6582 36 1 2.3027 4.8900 -4.0311 37 1 4.1991 6.3936 -3.7306 38 1 4.6752 6.8384 -2.0743 39 1 2.4203 7.7926 -1.6823 40 1 1.9443 7.3478 -3.3387 41 1 4.3987 9.1394 -1.3694 42 1 7.0760 10.5877 -0.0049 43 1 1.4757 9.6335 -3.9478 44 1 2.5812 10.7206 -1.3186 45 1 0.9860 11.1018 -2.0108 46 1 1.3519 9.4433 -1.4786 47 1 3.2472 11.0375 -4.9674 48 1 2.0932 12.0331 -4.0477 49 1 3.6880 11.6515 -3.3559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725215085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:26 Heat of formation + Delta-G solvation = -9.569706 kcal Electronic energy + Delta-G solvation = -27646.481862 eV Core-core repulsion = 23927.743069 eV Total energy + Delta-G solvation = -3718.738794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35098 -40.41062 -38.89378 -36.79923 -34.96186 -34.70984 -33.07860 -31.56794 -30.55152 -28.26396 -27.88511 -27.44082 -26.29800 -25.06134 -23.85657 -23.10057 -21.79346 -20.20247 -19.75211 -19.46619 -19.09291 -17.77985 -17.31565 -16.87843 -16.63958 -16.16597 -15.80975 -15.66930 -15.32505 -15.13488 -15.09847 -14.89271 -14.60159 -14.40412 -14.22101 -14.00447 -13.94929 -13.54875 -13.23620 -12.97974 -12.86585 -12.80794 -12.71575 -12.62178 -12.53235 -12.38554 -12.12116 -12.05520 -12.03959 -11.80579 -11.66274 -11.35594 -11.13611 -11.09832 -10.79766 -10.60578 -10.44028 -10.05680 -9.60735 -8.84669 -7.81309 -5.06950 -0.81216 0.14237 0.55225 1.36779 1.47209 1.49525 1.55209 1.86629 2.08282 2.62484 3.04778 3.49007 3.50820 3.90041 3.94719 3.98869 4.08173 4.16939 4.22355 4.28155 4.32626 4.33119 4.41972 4.44730 4.52666 4.68100 4.69348 4.70991 4.81198 4.89025 4.94483 4.99667 5.01595 5.05966 5.10298 5.17698 5.22928 5.29043 5.35443 5.41342 5.46724 5.51108 5.60507 5.66506 5.85138 6.21281 6.38525 6.60579 6.99313 7.44622 8.24367 8.46290 9.42104 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002614 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.372537 B =10707.246940 C =11440.816392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.028 3.972 4 N -0.509 5.509 5 C 0.110 3.890 6 C -0.324 4.324 7 C 0.578 3.422 8 O -0.569 6.569 9 N -0.605 5.605 10 C 0.053 3.947 11 C 0.129 3.871 12 C -0.122 4.122 13 C 0.177 3.823 14 H 0.055 0.945 15 N -0.725 5.725 16 C -0.207 4.207 17 H 0.081 0.919 18 C -0.084 4.084 19 N -0.973 5.973 20 Si 0.959 3.041 21 H -0.280 1.280 22 H -0.306 1.306 23 H -0.278 1.278 24 C -0.104 4.104 25 C -0.130 4.130 26 C -0.139 4.139 27 S 0.275 5.725 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.095 0.905 41 H 0.368 0.632 42 H 0.243 0.757 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -23.463 -9.247 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.245 4.245 4 N -0.224 5.224 5 C -0.048 4.048 6 C -0.448 4.448 7 C 0.366 3.634 8 O -0.450 6.450 9 N -0.337 5.337 10 C -0.090 4.090 11 C 0.007 3.993 12 C -0.161 4.161 13 C 0.068 3.932 14 H 0.073 0.927 15 N -0.364 5.364 16 C -0.340 4.340 17 H 0.099 0.901 18 C -0.276 4.276 19 N -0.625 5.625 20 Si 0.790 3.210 21 H -0.206 1.206 22 H -0.234 1.234 23 H -0.205 1.205 24 C -0.125 4.125 25 C -0.188 4.188 26 C -0.197 4.197 27 S 0.534 5.466 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.187 0.813 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.113 0.887 41 H 0.199 0.801 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.676 -23.447 -9.595 29.792 hybrid contribution 1.494 1.764 1.817 2.940 sum -14.182 -21.683 -7.777 27.051 Atomic orbital electron populations 1.21787 0.92399 1.03961 1.02248 1.20531 0.97462 0.85383 1.05941 1.28677 0.98917 1.03280 0.93626 1.66329 1.16925 1.05748 1.33348 1.22110 0.95021 0.91980 0.95739 1.25674 1.18959 1.01122 0.99075 1.17288 0.78149 0.85125 0.82856 1.90920 1.48410 1.49511 1.56161 1.47811 1.57872 1.21959 1.06042 1.22356 0.98374 0.93481 0.94778 1.21425 0.95798 0.82071 1.00009 1.22056 0.98425 0.94465 1.01114 1.20488 0.88412 0.91074 0.93218 0.92725 1.42624 1.26657 1.58552 1.08555 1.19511 1.00469 1.19797 0.94186 0.90136 1.25439 1.02141 1.04029 0.95961 1.69865 1.36664 1.51868 1.04151 0.85407 0.79831 0.79423 0.76354 1.20626 1.23351 1.20476 1.21640 0.98071 0.96908 0.95864 1.21638 0.99395 1.00204 0.97546 1.21783 1.00501 0.97471 0.99900 1.83653 1.56445 0.99393 1.07139 0.89095 0.93681 0.91628 0.86525 0.88667 0.81262 0.89809 0.90056 0.86081 0.87921 0.93394 0.94244 0.88651 0.80068 0.94831 0.89986 0.95408 0.92856 0.93631 0.93051 0.93196 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 71.98 0.71 -0.42 16 2 C -0.05 -0.50 6.51 29.85 0.19 -0.31 16 3 C 0.03 0.49 6.64 88.46 0.59 1.08 16 4 N -0.51 -12.72 10.51 -190.30 -2.00 -14.72 16 5 C 0.11 3.14 11.10 84.23 0.93 4.07 16 6 C -0.32 -8.74 6.22 23.88 0.15 -8.60 16 7 C 0.58 19.70 7.62 86.45 0.66 20.36 16 8 O -0.57 -26.17 16.52 -4.30 -0.07 -26.24 16 9 N -0.61 -16.43 2.87 -851.52 -2.45 -18.88 16 10 C 0.05 0.78 8.85 127.77 1.13 1.91 16 11 C 0.13 4.13 5.22 86.38 0.45 4.58 16 12 C -0.12 -3.86 4.71 30.59 0.14 -3.72 16 13 C 0.18 6.53 2.13 44.99 0.10 6.63 16 14 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 15 N -0.72 -35.78 3.54 -322.95 -1.14 -36.93 16 16 C -0.21 -11.20 7.75 84.04 0.65 -10.55 16 17 H 0.08 4.11 7.32 -2.91 -0.02 4.09 16 18 C -0.08 -4.94 5.50 84.86 0.47 -4.48 16 19 N -0.97 -62.75 13.06 21.65 0.28 -62.47 16 20 Si 0.96 47.53 29.55 68.60 2.03 49.56 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 C -0.10 -3.47 2.74 -10.79 -0.03 -3.50 16 25 C -0.13 -4.73 8.74 71.98 0.63 -4.10 16 26 C -0.14 -4.88 8.46 71.98 0.61 -4.28 16 27 S 0.27 4.15 18.10 -56.49 -1.02 3.13 16 28 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.08 0.94 7.55 -2.38 -0.02 0.92 16 35 H 0.08 1.03 5.13 -17.51 -0.09 0.94 16 36 H 0.12 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.10 2.67 8.07 -2.39 -0.02 2.65 16 38 H 0.05 2.10 7.12 -2.39 -0.02 2.08 16 39 H 0.04 1.50 6.81 -2.38 -0.02 1.49 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.37 21.07 7.80 -92.71 -0.72 20.34 16 42 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.03 1.23 7.47 -2.39 -0.02 1.21 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.58 6.68 -2.39 -0.02 1.56 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.04 1.94 5.99 -2.39 -0.01 1.92 16 Total: -1.00 -79.15 401.39 3.15 -76.00 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.14 Total: 31.86 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 7.38 Total: -1.32 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -5.31 Total: -132.99 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.07 Total: -26.24 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.02 Total: 3.13 kcal Total: -79.15 3.15 -76.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725215085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.430 kcal (2) G-P(sol) polarization free energy of solvation -79.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds